Basic Information

Insect: Hyphantria cunea
Gene Symbol: -
Assembly: GCA_003709505.1
Location: PKRV01000080.1:8575-21546[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.01 0.65 10.6 1.9 1 23 260 283 260 283 0.97

2 10 0.0016 0.1 13.2 0.4 1 23 290 312 290 312 0.98

3 10 0.037 2.3 8.9 0.3 3 23 349 370 347 370 0.93

4 10 7.8e-05 0.0049 17.3 4.0 2 23 373 394 372 394 0.96

5 10 8.9e-06 0.00056 20.3 0.4 1 23 400 422 400 422 0.95

6 10 0.3 19 6.0 1.1 2 21 432 451 431 456 0.93

7 10 8.1e-05 0.0051 17.3 3.1 1 23 461 484 461 484 0.95

8 10 0.00069 0.043 14.3 1.6 1 23 490 512 490 513 0.95

9 10 0.00024 0.015 15.8 2.0 1 23 521 543 521 543 0.96

10 10 0.0019 0.12 13.0 0.1 1 23 549 572 549 572 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.01	0.65	10.6	1.9	1	23	260	283	260	283	0.97
2	10	0.0016	0.1	13.2	0.4	1	23	290	312	290	312	0.98
3	10	0.037	2.3	8.9	0.3	3	23	349	370	347	370	0.93
4	10	7.8e-05	0.0049	17.3	4.0	2	23	373	394	372	394	0.96
5	10	8.9e-06	0.00056	20.3	0.4	1	23	400	422	400	422	0.95
6	10	0.3	19	6.0	1.1	2	21	432	451	431	456	0.93
7	10	8.1e-05	0.0051	17.3	3.1	1	23	461	484	461	484	0.95
8	10	0.00069	0.043	14.3	1.6	1	23	490	512	490	513	0.95
9	10	0.00024	0.015	15.8	2.0	1	23	521	543	521	543	0.96
10	10	0.0019	0.12	13.0	0.1	1	23	549	572	549	572	0.95

Sequence Information

Coding Sequence: atggaaattgataatatttgtattacatgCATGAGTACTGGTCGACgcctaatacctttaaatacaataagaacaattttaaaaaatattaatttaaccgAATTAGAAACGTGCTTTCATGCGCTCGTTTGTTGGGAATGTAAGGGACTTATAACAAAATTTCACAGATTTAAAGTGAAAGCTGTACATTCACATATTATATTGACTGAGAATCTTACGCGTAAAGATATAAAATCATTGAGCACTTTAGTGATTAGCGAGATAAATAATACTCATTACAATCCAGATCCTTTAATCAACTGTGATGGTAAACCAAAGATAggaaataatatcattaaagaAGAGGAAGCAGATACAGTAGAATTAGTAGAAGTCAATGGAGAAGTAACAGAAACAGCAGAGAGAACTTCACATATTTATCACAGTATAAGTGACACTGACAATACTATTGACAGTATAAGTGATAAGGAGGAATTAATTAATGATAGTAAAGCAAATGATGAAATAATAGAAGCTAATGCTGAAATAATAGAAGCTAATGCCGAAACAATAGAAGCGAATGATGAAGACTTATTGGAAATTAATCAAACAGgtttaaaaatagacaaaacggaaattaattataaaactagttATGTAAAGAGAAGAAATATAGTTAAAAGACCTAAAATTGATGCAGAACTTGAGGAGAAGTTCACAAAAGTAGAGTTTAGTgaagaagaaattataaaacacaGAGAAAACAAGAGAAaccattataattttaagaagatACCGTTTAAATGTGACTCTTGTGTGCTTGGTTTTACCAAGAAAGAGACTTTTGATAAACACATGGAGAAGAAACATGACgagAGCATAGGTCCTTTTAAATGCGATATTTGTGAAGTGCGTTTCGCATCGAAGTTGTCTGTGGCGAACCATAGGATGCGTCACTACTACTGCTATAGATGTAGGCTATGCAAGTACGAGACCTCTCAGCTGTGGTCTGCACTCAACCATTGCAAGATGAAACACGAACGAGATCGCCTTGACAGCATACATTGTGCACAGTGTGATACAGTCGTTAAGACTACTAAGGAGTTGGAAGAGCACGTACAGTTGGAACATAGACTCCATTGTAATGAATGTGGCATTAGGTTCAAGGGGAAGCATACCTTGAGGAATCATATGAATCTCCACGCCAAGAAGAGACAGTACATCTGCGATATCTGCACCAAGTCTTTCAAAACGAAAAGTCGTCTTGAGAGTCACGTGGCGGGCCACAACTCTGCCTTGGCCAACAAACTGTCGTACTGTCACGAGTGCCAAGTGCAGTACAAGAACATTTATGTGTATAGGAACCACCTCAGAAATAGTGGCAACCATTCTGAAAGGACGTTCAAGTGTACAGACTGCAACAAAAATTTCGCGTCCAAGGTGTACTGGACTAGGCATTACAACTTCTACCATCTGCGCAAGTCACAATATAACTGCGAGATATGCAATAAGCTGTTCATATCGGAGTGGCGGCTCAAAAACCATCGCCAGATACACCACGGCCTGTCTCGTCCGAAGAACCACCCCTGCAACGTTTGCGGCAAGAAGTTCTTTTCGATCACAACACTACGGAACCACAAGCTTATCCACTCCGAGCAGAGGAGCTACATGTGCGAGGGCTGTGGCGACACTTTCAAGCAGCGGCCGGCGCTCTACACACACGCCAAGCTCGTGCATGGCGACGGGCGACGGAAATAG
Protein Sequence: MEIDNICITCMSTGRRLIPLNTIRTILKNINLTELETCFHALVCWECKGLITKFHRFKVKAVHSHIILTENLTRKDIKSLSTLVISEINNTHYNPDPLINCDGKPKIGNNIIKEEEADTVELVEVNGEVTETAERTSHIYHSISDTDNTIDSISDKEELINDSKANDEIIEANAEIIEANAETIEANDEDLLEINQTGLKIDKTEINYKTSYVKRRNIVKRPKIDAELEEKFTKVEFSEEEIIKHRENKRNHYNFKKIPFKCDSCVLGFTKKETFDKHMEKKHDESIGPFKCDICEVRFASKLSVANHRMRHYYCYRCRLCKYETSQLWSALNHCKMKHERDRLDSIHCAQCDTVVKTTKELEEHVQLEHRLHCNECGIRFKGKHTLRNHMNLHAKKRQYICDICTKSFKTKSRLESHVAGHNSALANKLSYCHECQVQYKNIYVYRNHLRNSGNHSERTFKCTDCNKNFASKVYWTRHYNFYHLRKSQYNCEICNKLFISEWRLKNHRQIHHGLSRPKNHPCNVCGKKFFSITTLRNHKLIHSEQRSYMCEGCGDTFKQRPALYTHAKLVHGDGRRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00441869; iTF_01360989;
90% Identity: -
80% Identity: -