Basic Information

Insect: Spilosoma lubricipeda
Gene Symbol: -
Assembly: GCA_905220595.1
Location: HG992289.1:5173707-5178705[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.8e-06 0.00097 20.4 6.4 1 23 156 178 156 178 0.98

2 12 0.002 0.2 13.2 0.7 1 23 182 204 182 204 0.98

3 12 0.0008 0.079 14.4 0.2 2 23 226 247 225 247 0.96

4 12 3.7e-05 0.0037 18.6 2.5 2 23 255 276 254 276 0.97

5 12 3.5e-09 3.5e-07 31.3 0.6 1 23 282 304 282 304 0.99

6 12 0.00014 0.014 16.8 1.6 3 23 312 332 311 332 0.97

7 12 1.4e-07 1.4e-05 26.2 1.0 1 23 338 360 338 360 0.96

8 12 9.1e-05 0.0089 17.4 0.4 1 23 366 388 366 388 0.97

9 12 0.00049 0.048 15.1 1.6 1 23 394 416 394 416 0.97

10 12 6.5e-05 0.0064 17.9 3.9 1 23 422 444 422 444 0.98

11 12 1.7e-07 1.7e-05 26.0 1.0 1 23 450 472 450 472 0.99

12 12 2.6e-05 0.0026 19.1 1.1 1 23 478 500 478 500 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.8e-06	0.00097	20.4	6.4	1	23	156	178	156	178	0.98
2	12	0.002	0.2	13.2	0.7	1	23	182	204	182	204	0.98
3	12	0.0008	0.079	14.4	0.2	2	23	226	247	225	247	0.96
4	12	3.7e-05	0.0037	18.6	2.5	2	23	255	276	254	276	0.97
5	12	3.5e-09	3.5e-07	31.3	0.6	1	23	282	304	282	304	0.99
6	12	0.00014	0.014	16.8	1.6	3	23	312	332	311	332	0.97
7	12	1.4e-07	1.4e-05	26.2	1.0	1	23	338	360	338	360	0.96
8	12	9.1e-05	0.0089	17.4	0.4	1	23	366	388	366	388	0.97
9	12	0.00049	0.048	15.1	1.6	1	23	394	416	394	416	0.97
10	12	6.5e-05	0.0064	17.9	3.9	1	23	422	444	422	444	0.98
11	12	1.7e-07	1.7e-05	26.0	1.0	1	23	450	472	450	472	0.99
12	12	2.6e-05	0.0026	19.1	1.1	1	23	478	500	478	500	0.97

Sequence Information

Coding Sequence: atggaaattagtaataaaatatatgataatagTTGCCGCACATGTTTAGAGGATGGCTGTGACGAAATGTATGATATTTTTGAACCAAATAAAGATATTGGGAGTGTTGCTGAAATGTTGTGTTCTTACACTACACTAAGggtgACAATCGATGACCAATTACCAAAGAAAATATGCAGTAACTGTTTCTATTGTGTGttgaattttcataattttacaataaatgcTTTAAAAGCTGATAAGAAATTAACGGAATATTGTCAAAACTTTAAACCAGTATACAAAGAAGAGCCAAATGAATGGGAGGATTTTGATGAGAAACACTTAAACCAGGCAGAGGTATCAACTAATGCAGGGTTTGACGTAGACAATGAAGATTATAGTTATTCAACAGACAGTAACATTGAAAATGACACATTTAACATGTCAGAGACAAGTGTAGAATCACATTCCAAAACCAAAAATTTCAGATGTAAGGTTTgtaacaaaaagtttaaaaaacaaccAAACTACAAACATCATATGCAGATGCATACCAAAGATTACAACTGTACTATATGCCAACAGATTTTCCAAGACAATAATAGCTACGTACAGCATCTTATCAAACATCAAGAAGATCCCAAAGAAAAGTTCTTAACTCCTTCATCTAATGCAAATAACAACCAAAACTTAACCTGTGAGATATGCTCTTTCTCTTTCAAGTCAATACCTTCACTGTCAGCTCACCAAAAGGCACACATACCTAAAAACCGAGTACTTCAATGTGCAATATGTAAAAAGATATTCAAAAAGATAAGTCATTTAAAACGCCACGAACTTACTCATGATGATAACCGTATTTACAAATGCAATATTTGCCCTAAATCTTTTGCgacaaaagataatttaaaagctcacataaataaacataaaggtATCAAGAATAACCATTGTCCAATATGTGCAAAGATGTTCGCTCATATAGAGTCTCTTACTAGACACATAAAACTCCATACAAGAGAGAAGCCGTATTTATGTCCGACTTGTGGCAAAATGTTTGATTCTAGTACCAATTTAAACCAACACATGAAACGACATACTGGATTAAGGTTGTATGCTTGCAATTTGTGCCCAGGAACATTTAAAAGTAAAGGTGAACTAAAATCTCACAGTATGACCCACACTGGTGAACGTCCGTTTGCATGCAACCTGTGTAACGGAGCCTTTACAAAACGCAGCTACTTGGAGAAACACAAGTTTACACATTTAGGTGTTAAACCACATCAATGTGATGTTTGTGCTATGAAGTTTGCAGACAAAAATCACTTGAAGCGTCACTACAGAATACATACGGGTGAAAAACCTTACCGTTGTGACATATGTGACCGGGCGTTCACACAGAGCAATGATTTAGTCAAACATAAGCGAACACATTTAGGAAATAATCTGTATAAGTGCGACGAATGCAGTCAAAGTTTCAGACTCAAGACGGAACTACGTCAGCATATATCTGAACATTTCATCTCAGCACAGCTGCAATCCAAGGTTGACAGCAATGCAGAACAGGGTCAGCCAATAGAGGGTAGTTGTGATTTAAATATAGTACAAACAGTACAACCACAGATTTGTGACTTATGA
Protein Sequence: MEISNKIYDNSCRTCLEDGCDEMYDIFEPNKDIGSVAEMLCSYTTLRVTIDDQLPKKICSNCFYCVLNFHNFTINALKADKKLTEYCQNFKPVYKEEPNEWEDFDEKHLNQAEVSTNAGFDVDNEDYSYSTDSNIENDTFNMSETSVESHSKTKNFRCKVCNKKFKKQPNYKHHMQMHTKDYNCTICQQIFQDNNSYVQHLIKHQEDPKEKFLTPSSNANNNQNLTCEICSFSFKSIPSLSAHQKAHIPKNRVLQCAICKKIFKKISHLKRHELTHDDNRIYKCNICPKSFATKDNLKAHINKHKGIKNNHCPICAKMFAHIESLTRHIKLHTREKPYLCPTCGKMFDSSTNLNQHMKRHTGLRLYACNLCPGTFKSKGELKSHSMTHTGERPFACNLCNGAFTKRSYLEKHKFTHLGVKPHQCDVCAMKFADKNHLKRHYRIHTGEKPYRCDICDRAFTQSNDLVKHKRTHLGNNLYKCDECSQSFRLKTELRQHISEHFISAQLQSKVDSNAEQGQPIEGSCDLNIVQTVQPQICDL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707192;
90% Identity: iTF_00441769;
80% Identity: -