Basic Information

Insect: Diaphora mendica
Gene Symbol: -
Assembly: GCA_949125395.1
Location: OX421324.1:19634398-19640917[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00087 0.12 14.3 4.5 1 23 156 178 156 178 0.98

2 12 0.0017 0.23 13.4 0.5 1 23 182 204 182 204 0.98

3 12 0.00081 0.11 14.4 0.2 2 23 225 246 224 246 0.96

4 12 3.8e-05 0.0051 18.6 2.5 2 23 254 275 253 275 0.97

5 12 9.2e-08 1.2e-05 26.8 1.9 1 23 281 303 281 303 0.99

6 12 0.00011 0.015 17.2 1.0 3 23 311 331 310 331 0.97

7 12 1.4e-07 1.9e-05 26.2 1.0 1 23 337 359 337 359 0.96

8 12 0.00014 0.019 16.8 0.2 1 23 365 387 365 387 0.97

9 12 0.0005 0.067 15.1 1.6 1 23 393 415 393 415 0.97

10 12 6.5e-05 0.0088 17.9 3.9 1 23 421 443 421 443 0.98

11 12 1.7e-07 2.4e-05 26.0 1.0 1 23 449 471 449 471 0.99

12 12 2.6e-05 0.0035 19.1 1.1 1 23 477 499 477 499 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00087	0.12	14.3	4.5	1	23	156	178	156	178	0.98
2	12	0.0017	0.23	13.4	0.5	1	23	182	204	182	204	0.98
3	12	0.00081	0.11	14.4	0.2	2	23	225	246	224	246	0.96
4	12	3.8e-05	0.0051	18.6	2.5	2	23	254	275	253	275	0.97
5	12	9.2e-08	1.2e-05	26.8	1.9	1	23	281	303	281	303	0.99
6	12	0.00011	0.015	17.2	1.0	3	23	311	331	310	331	0.97
7	12	1.4e-07	1.9e-05	26.2	1.0	1	23	337	359	337	359	0.96
8	12	0.00014	0.019	16.8	0.2	1	23	365	387	365	387	0.97
9	12	0.0005	0.067	15.1	1.6	1	23	393	415	393	415	0.97
10	12	6.5e-05	0.0088	17.9	3.9	1	23	421	443	421	443	0.98
11	12	1.7e-07	2.4e-05	26.0	1.0	1	23	449	471	449	471	0.99
12	12	2.6e-05	0.0035	19.1	1.1	1	23	477	499	477	499	0.97

Sequence Information

Coding Sequence: atggatattagtaataaaatatatgacaaTAGTTGCCGCACATGTTTAGAGGATGGCTGTGACGAAATGCATGATATTTTTGAACCAAATAAAGATATTGGGAGTGTTGCTGAAATGTTGTCTTCTTACACTACACTAAGGGTGACAATGGATGACCAATTACCAAAGAAAATATGCAGTAACTGTTTCAATTGTGTGTtgaattttcataattttacaaTAAATGCTTTAAAAGCTGATAAGAAGTTAAcggaatattttgaaaattttaaactagTATACAAAGAAGAGCCAAATGAATGGGAAGATTTTGATGACAAACACTCAAAACAGGCCGATGTATCAACTAATGCAGGGTTTGACATAGACAatgaagattataattattcaaCAGACAGTAACATTGAAAACGACACATTTAACATGTCAGAGACAAGTGTAGAATCACATTCCAAAACCAAAAATTTCAGATGTGAGGTTTGtaacaaaaagtttaaaaaacaacCGAACTACGAATGTCATATGCAGATGCATGCCAATGACTACAACTGTACTATATGCCAAGAAATATTCCAAGACAATAATAGCTACGTACAGCATCTTATCAAACATCAAGAAGATCCCAAAGAAAAGTTCTTAACTCCATCTAATGCAAATAACAACCAAAACTTAACATGTGAGATATGCTCTTTCTCTTTCAAGTCAATACCTTCACTGTCAGCTCACCAAAAGGCACACATACCTAAAAACCGAGTACTCCAATgcgcaatttgtaaaaagatatttaaaaagataAGTCATTTAAAACGCCACGAACTTACTCACGATGATAACCGTCTTTACAAATGCAATATTTGTTCTAAATCGTTTGCGACAGAAGATCATTTAAAAGCGCACATAAACAAACATAAAGGTATCAAGAATAATCATTGTCCAATTTGTGCAAAGATGTTCGCCCATATAGATGCTCTTAATAGACATATAAAGCTGCATACAAGAGAGAAGCCGTATTTATGCCCAACTTGTGGCAAAATGTTTGACTCTAGTACAAATTTGAACCAACATATGAAACGGCATACTGGATTAAGATTATATGCTTGTAATTTGTGCCCAGCTAAATTCATAAGTAAAGGTGAACTAAAATCTCACAGTATGACCCACACCGGTGAACGTCCGTTTGCTTGCAACCTGTGCAACGGAGCCTTCACAAAACGCAGCTACTTGGAGAAACACAAGTTCACACATTTAGGTGTTAAACCGCATCAGTGTGATGTTTGTGCCATGAAgtTTGCAGACAAAAATCACTTGAAGCGTCACTACAGAATACATACGGGTGAAAAACCTTACCGCTGTGACATCTGTGACCGGGCGTTCACACAGAGCAATGATTTAGTTAAACATAAGAGAACACATTTAGGAAATAATCTGTACAAGTGCGACGAATGCAGTCAAAGTTTCAGACTCAAGACGGAACTACGTCAGCATATATCTGAACATTTCATCTCAGCACAGCTGCAATCCAAGGTCGACTCCAATGCTGAACAGGGTCAACCAATTGAGGGTAGTTGTGATTTAAATATGGTACAAACAGTACAACCACAGATTTGTGGCTTATGA
Protein Sequence: MDISNKIYDNSCRTCLEDGCDEMHDIFEPNKDIGSVAEMLSSYTTLRVTMDDQLPKKICSNCFNCVLNFHNFTINALKADKKLTEYFENFKLVYKEEPNEWEDFDDKHSKQADVSTNAGFDIDNEDYNYSTDSNIENDTFNMSETSVESHSKTKNFRCEVCNKKFKKQPNYECHMQMHANDYNCTICQEIFQDNNSYVQHLIKHQEDPKEKFLTPSNANNNQNLTCEICSFSFKSIPSLSAHQKAHIPKNRVLQCAICKKIFKKISHLKRHELTHDDNRLYKCNICSKSFATEDHLKAHINKHKGIKNNHCPICAKMFAHIDALNRHIKLHTREKPYLCPTCGKMFDSSTNLNQHMKRHTGLRLYACNLCPAKFISKGELKSHSMTHTGERPFACNLCNGAFTKRSYLEKHKFTHLGVKPHQCDVCAMKFADKNHLKRHYRIHTGEKPYRCDICDRAFTQSNDLVKHKRTHLGNNLYKCDECSQSFRLKTELRQHISEHFISAQLQSKVDSNAEQGQPIEGSCDLNMVQTVQPQICGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00707192;
90% Identity: iTF_01360906;
80% Identity: -