Slub017483.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Spilosoma lubricipeda
Gene Symbol
-
Assembly
GCA_905220595.1
Location
HG992287.1:9945274-9960335[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.011 17.1 0.1 3 23 132 152 131 152 0.97
2 19 9.9e-07 9.8e-05 23.6 1.2 1 23 158 180 158 180 0.99
3 19 6.2e-06 0.00061 21.1 2.7 1 23 186 208 186 208 0.99
4 19 4.1e-06 0.0004 21.6 2.6 1 23 223 245 223 245 0.98
5 19 9.8e-05 0.0097 17.3 0.6 1 23 260 282 260 282 0.98
6 19 5.6e-05 0.0055 18.0 3.1 1 23 297 319 297 319 0.98
7 19 3.9e-07 3.9e-05 24.8 1.5 1 23 334 356 334 356 0.99
8 19 0.00017 0.017 16.5 2.8 1 23 362 384 362 384 0.98
9 19 0.00088 0.086 14.3 0.0 1 23 391 413 391 413 0.97
10 19 1.2e-05 0.0012 20.1 2.1 1 23 419 441 419 441 0.99
11 19 0.04 3.9 9.1 1.8 1 23 448 470 448 470 0.98
12 19 6.7e-07 6.5e-05 24.1 2.3 1 23 476 498 476 498 0.99
13 19 0.046 4.5 8.9 1.8 1 23 505 527 505 527 0.98
14 19 2.7e-06 0.00027 22.2 1.5 1 23 533 555 533 555 0.99
15 19 0.00052 0.051 15.0 0.7 1 23 562 584 562 584 0.99
16 19 3e-06 0.00029 22.1 1.9 1 23 590 612 590 612 0.98
17 19 0.0022 0.22 13.0 0.3 1 20 618 637 618 640 0.93
18 19 4.2e-05 0.0042 18.4 1.4 2 23 647 668 646 668 0.96
19 19 3.3e-06 0.00032 21.9 1.3 1 23 674 697 674 697 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGtttttacacaCATCCCCATGTTCACACCGGTCCCCCTACGATAATCCGAACAGATTCAAATCATGCAAGCATCATCAACATGAATCAACATCATCAGTCACATCAAGAGGATTCTAAAGACAGTCTCATAGTACAACATCAAGTACAACATCAAGATCTCATGGAACAACATCAGCAGCAACAAGAAATGCAACAAGATGACGAGTTAAGCTTCAAGGGAATGGAAGATGAAGGGGTTGAAATGGATATGGACGGTCGACAATGTCCTCAGGGTATGGGAGTGGACATGGGATCTATTCAAACCAAGATGGAAGTGTCGAATGGAGGGCAATCGACACCTCGATCAAAACCTCAAGCTTGTAAGGTATGTGGAAAAGTGCTGTCATCGGCGTCTTCATACTACGTTCATATGAAGCTACACTCAGGAAACAAACCTTTTCAGTGCACTGTTTGCGACGCAGCTTTTTGCCGTAAACCTTACCTGGAAGTCCACATGCGTACTCATACGGGAGAACGTCCGTTTCAATGTGATCTCTGCCTCAAACGATTTACACAGAAGTCCAGTCTGAACACGCACAAACGTGTCCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAACTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAAACGTGCGCTGCTGGCTAAGAAACGGCCCTACCAATGCGGCATCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACTGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGCATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGACCTTTCGCGTGCGGGCTTTGCCCGGCGGCGTTCGGCCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAATCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGCCCGTATCAGTGCGACATCTGCCTCAAACGCTTCACGCAGAAATCCAGTCTCAACATTCACAAGCGGACTCATTCAGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACTTGCAAGCAGTACTTGGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAAAGAACGCACACAGTACAAGGAAGGCCGTATCAATGTATGGAGTGCCCAGCGGCGTTCACTTGCAAGCCGTACCTGGAGATTCACATGCGCACACACACGGGCGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACACTCAACATTCACAAGCGAATTCATACCGGTGAACGTCCATACGCTTGTGACATTTGTCAGAAAAGGTTTGCCGTTAAAAGCTATGTAACAGCGCACAGATGGTCTCACGTGGCGGACAAGCCGTTGAACTGCGACCGGTGTTCGATGACGTTCACATCTAAATCGCAGTTCGCGCTACATATCCGCACTCACTCGACAGGCTCGTGCTATGAGTGCAGTGTTTGTGGACGCTCCTTCGTAAGGGACAGCTATCTTATAAGACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCTGCAAACAGCATGGGAACATCGCTCGCTACCAACACCAACAACTCCAATAACGGCGGCTTTGACTCGCCGGGCGTTTGTGACTTAAGCTTTGTACCAATGGTAAATCGCTACATGACATCCCAAGGAACGCAAGTGTCCATGCAAGACACGAGCAAAATGTCAGCGATGTCACCTCAGTCAATCGCATCTATTTCATCGCCCCCTCCCTCGCATACCCCGACGCCCCAACCGCAGATGTCTGGTCAGTTGCATCTTACAGATTGA
Protein Sequence
MFEQQIKAEPMSFYTHPHVHTGPPTIIRTDSNHASIINMNQHHQSHQEDSKDSLIVQHQVQHQDLMEQHQQQQEMQQDDELSFKGMEDEGVEMDMDGRQCPQGMGVDMGSIQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHKRALLAKKRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGLCPAAFGRRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSMGTSLATNTNNSNNGGFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQLHLTD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00209095;
90% Identity
iTF_01076785;
80% Identity
-