Blac022292.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blastobasis lacticolella
Gene Symbol
-
Assembly
GCA_905147135.1
Location
LR990055.1:9492991-9507856[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00012 0.011 17.2 0.1 3 23 163 183 162 183 0.97
2 17 1.1e-06 9.7e-05 23.6 1.2 1 23 189 211 189 211 0.99
3 17 6.6e-06 0.0006 21.1 2.7 1 23 217 239 217 239 0.99
4 17 7.4e-06 0.00068 21.0 1.9 1 23 254 276 254 276 0.98
5 17 6e-05 0.0055 18.1 3.1 1 23 291 313 291 313 0.98
6 17 4.2e-07 3.8e-05 24.9 1.5 1 23 328 350 328 350 0.99
7 17 0.00019 0.017 16.6 2.8 1 23 356 378 356 378 0.98
8 17 1.3e-05 0.0012 20.2 2.1 1 23 384 406 384 406 0.99
9 17 0.043 3.9 9.2 1.8 1 23 413 435 413 435 0.98
10 17 7.1e-07 6.5e-05 24.2 2.3 1 23 441 463 441 463 0.99
11 17 0.18 16 7.2 1.8 1 23 470 492 470 492 0.98
12 17 2.9e-06 0.00026 22.3 1.5 1 23 498 520 498 520 0.99
13 17 0.00089 0.081 14.4 0.6 1 23 527 549 527 549 0.99
14 17 2.6e-06 0.00023 22.4 2.4 1 23 555 577 555 577 0.98
15 17 0.0023 0.21 13.1 0.3 1 20 583 602 583 605 0.93
16 17 4.5e-05 0.0041 18.5 1.4 2 23 612 633 611 633 0.96
17 17 4.1e-06 0.00038 21.8 1.4 1 23 639 662 639 662 0.97

Sequence Information

Coding Sequence
ATGTTTGAGCAGCAGATAAAGGCTGAGCCCATGAGCTTCTACACCCACCCACACGTCCACGCCGCTCACGGGCCCCCGACGATAGTGCGCGCGGAGTCGAACCACTCCATCATCAATATGCAGCACCATCACCAGGAAGACTCGAAGGACAGCCTTAGCGTACAGCAGCAGCATCACCAGGACCTGCTCGACCATCAGCAGCAAGAGATGCAGCACCATCCAGACGACGAGGAGGACTCCAACGACAGCTATATAGTGCAGCAGCAGATGCAGCATCAGGCCATGCTGACGCAGCAGCAGCAAGAGTTGCAGCAACAGCAAGACGATGAATTAAGCTTCAAAGGCATGGAAGATGAGGGAGTGGACATGGATATGGATGCACGGCAGTGCACGCAGGGTATGGGTGTGGATATGGGATCAGTTCAGACTAAAATGGAGGTGCCAAATGGGGGTGGACAGTCAGCGCCGCGATCTAAACCACAGGCCTGTAAGGTCTGTGGCAAAGTGCTATCGTCTGCATCTTCATACTATGTTCACATGAAACTACATTCTGGGAATAAGCCCTTCCAGTGCACGGTATGCGACGCGGCGTTCTGTCGCAAGCCGTACCTGGAAGTGCATATGCGCACGCACACGGGCGAGAGGCCCTTTCAATGTGACCTCTGTCTCAAGCGATTCACACAGAAGTCCAGCCTGAACACGCACAAACGAGTACACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGCCCCTACAAGTGTGAGATCTGTCTGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATCCATACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGCTTCACTCAGAAGTCCAGCCTGGGCACTCATAAACGTATACACACCGGGGAGCGCCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGCGAGCGGCCGTATCAGTGCGACGCGTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGCGGACGCACACAGTCCAGGGGAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACCCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAACGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAAGGGCGGCCGTTCCAGTGCCTGTCGTGCCCGGCCGCCTTCACGTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACGGGCGAGCGGCCCTACCAGTGCGACGTGTGCCTCAAGCGGTTCGCGCAGAAGTCCACGCTCAACATACACAAGCGGACGCACACCGTGCAAGGGCGGCCGTACCAGTGCACCGAGTGCCCGGCCGCGTTCACCTGCAAGCCGTACCTCGAGATCCACGTGCGCACACACACGGGCGAGCGCCCGTTCCAGTGCGACGTCTGTTACAAACGGTTCACGCAGAAATCCACGCTGAACATACACAAGCGAATCCACACCGGTGAGCGTCCGTACGCTTGTGATATCTGCCAGAAACGGTTTGCGGTGAAGAGCTACGTTACGGCTCATAGATGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGACCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACAGCGCCACGTCCTGCTACGAGTGCAGCGTGTGTGGACGCACCTTCGTCAGGGACAGCTATCTCATCAGGCACCACAACCGCGTGCACCGCGACAACCACGGCAACGTGGCGGCGGGCGGGCTGGCCGCGCTCGGGACGCTGTCCACGCCCGCCGCCGCCTACGAGTCGCCCGCCGTCTGCGATCTCAGCTTCGTGCCGATGGTGAACCGGTACATGACGTCACAAGGCACGCAGGTCTCCATGCAGGACGCGCCCAGCAAGATGTCCGCCATGTCGCCGCAGTCCATCGCCTCCATATCGTCGCCTCCTCCGCCTCATACCCCGACGCCCCAGCCCCAGATGTCAGGTCAGATGCACCTGGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTHPHVHAAHGPPTIVRAESNHSIINMQHHHQEDSKDSLSVQQQHHQDLLDHQQQEMQHHPDDEEDSNDSYIVQQQMQHQAMLTQQQQELQQQQDDELSFKGMEDEGVDMDMDARQCTQGMGVDMGSVQTKMEVPNGGGQSAPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCEICLMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCTECPAAFTCKPYLEIHVRTHTGERPFQCDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSATSCYECSVCGRTFVRDSYLIRHHNRVHRDNHGNVAAGGLAALGTLSTPAAAYESPAVCDLSFVPMVNRYMTSQGTQVSMQDAPSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00636735; iTF_01502311; iTF_00637954; iTF_01360900; iTF_00909062; iTF_00707183;
90% Identity
-
80% Identity
-