Ssim027681.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453087.1:3494579-3497242[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00049 0.045 15.0 0.5 2 23 98 120 97 120 0.94 2 18 0.011 0.98 10.8 0.6 2 23 143 164 142 164 0.96 3 18 0.076 6.9 8.1 1.7 1 23 168 190 168 190 0.97 4 18 1.1 1e+02 4.4 3.3 1 11 195 205 195 218 0.83 5 18 0.64 58 5.2 1.6 2 23 226 248 225 248 0.95 6 18 1.7e-05 0.0015 19.6 1.3 2 23 256 278 255 278 0.96 7 18 0.2 19 6.7 2.7 1 23 284 306 284 306 0.96 8 18 0.035 3.2 9.2 3.2 1 23 312 334 312 334 0.99 9 18 3.6e-05 0.0033 18.6 2.8 1 23 340 363 340 363 0.98 10 18 0.0043 0.39 12.0 2.0 1 23 452 475 452 475 0.96 11 18 3.1 2.8e+02 3.0 0.0 2 23 502 524 501 524 0.89 12 18 8.1 7.4e+02 1.7 2.5 2 23 547 568 546 568 0.94 13 18 0.26 24 6.4 0.0 1 21 572 592 572 594 0.87 14 18 0.0048 0.44 11.9 0.7 1 23 599 622 599 622 0.94 15 18 0.085 7.7 7.9 1.2 1 23 628 651 628 651 0.97 16 18 0.012 1.1 10.7 1.1 2 23 659 681 658 681 0.94 17 18 0.00015 0.014 16.6 1.3 1 23 687 709 687 709 0.98 18 18 0.00047 0.043 15.1 1.2 1 23 715 738 715 738 0.98
Sequence Information
- Coding Sequence
- ATGGACCCAAAGGGCGAAGGACGAATACGAATCAGTCCTAAGCTGAAAGTAGCTAAACCTGTCAAAGAATCTAAGAAACATTtggcaaatttaaaaaatatcttgcaATACTCAAACGCGACGTTAATCAGAGGCAAAGACGGCGATGGGTACAAATGTAACTTTTGCATGAAGAAGTACCAACTCCCTAAAGATTTAAAATGTCACTTCTTACAAGAGCACAACGATTTCCAAACAATAAAGTTGCCTAAAATCTTTCAATATGTCTTAAAGATAGATATCACAGCGCTCACGTGCAAAATCTGCAGCAAAACCTTTGATAAACTCGAGGATTTTACAGACCATTTGCAAGGAGAACACAAGAAGACTATTCATACAGATATAAGGAACCAAATGATACCCTTCAAGTTTGATTCGGAGATCCTCCGCTGCGCAATTTGTGCTACAGAGTTCACCAACTACAAAGTTCTTCAAGAACACATGCATGTGCATTTCAGGAACTTCGTGTGTGATGTATGCAATTCCGGTTTCGTAACCAAACGGTTACTCGTTTGTCATAAACGCATGCACGGAATGGAGAAGTTTAAGTGTGATCATTGTGAGAAAATCTTTAGTTGTGATCGGAAAAGACGAGACCACGAGCAGAGGATTCATTTGGggttgaaaaagaaaaacaaatgtcACTTCTGTCTGGAGAAATTTGCAGATTATTGGACTAAGATCAATCATATGGTTAAAGAGCACGGAGCGCCCCCTGTCGTACTGAAATGTCAGGCTTGCGATAGGTCTTTCTCGAACAAGCGAGCGTTGACAAGACACGTAAAAAAGGACCATTTGATGGAACGAAAGCATGTTTGCAGCATTTGTGATATGAAGTTCTTTTTAAAGTGTAGAATGGAGGACCATATGGCCGTCCACACTGGAGACAAGAGGTTTCAATGCCACGTTTGTACACGGTGGTACATGACGAAGAAGTCGCTAGGACAACATCTGAGGTCACACGCGGATGATAGAAAGTTTACATGTACAAAATGTCCCCAAGCATTTGTACATCAGAACAGTCTAGACACTCACATGAAGACTAAGCATAGTTCCCAGGGTAGAAGAGAATGTCACCGGAATCGTGCCAAGTTATCAAAACAAAAAGCCATAAAAGCGcctaaaattgaaaaagaaaCAGACAGAAGGACTAATGACAAATTAGATACTAAGGAAACGTTAGCACAAAAAGGATTGAAGAATGTCAGCTCCGTCATCGTTCCTAGAAAAGAGGTTGATAAACACATAAGTAATATAAgagaaatattgttaaattcgAACGCTACCCCAATAAGATGTCATGGCGGTCAAGGGTACGCTTGCTGCTTTTGTAACAAACAGTACCAAAATCCAGCAGATTTGAAAGATCACACGAGAGAGCAACACGATGAAGCGGAGAAGAAAAACTTCATGAAAGGAAAGGAAATGTACGGCTACTTCGTCAAATTGGACATAACTGCGCTCGAATGCAAGATTTGCAACGCGAAAATCAACACAGTTGAGTCGATAATGGAGCATTTACAAGAAGTGCACAAGAAATGTATGTTTTTGGACATAAAGAACCACATTCTGCCCTTTAAGTTTGATAGCGAAGCGCTCAGCTGTTGCATCTGTTGCAACGTGTTCAATTCCTTCAAAGCTCTTTTAGAACACGTCAATGTTCACTACAGGAACTTTATCTGTCAAGTCTGTGATGCTGGCTTcgtcaataaaaacattttgttgaGACACGGCGACGCTCACAAAACGGGAACATTTGCGTGTACCGAATGTTCTAAAGTGTTTGATACGGCGCGAAAAAAGAAACTACACGTACGAGCACAACATCGGGGTGAATTGCCCCACAAATGTGGGTACTGCGCTGAGAGATTCAAGGAAATATGGGCAAAAAAGAATCACATGATGAAAGTGCACGATATTAAAGCTCCAGGCGTAAAATGCAAGGCCTGTGACAAACACTTCGCGACAAAACAGGGCTGGAGACTCCACACGGCGCGCGTTCATCTAATGCAGAAGAACTATAAGTGTGATGAATGTGATATGCAGTTTCACACGAAGAAGGAGTTGGTTATACACATAGTGAAACACACAGGCACGAGAGAGTTCACTTGTGATATCTGTATGAAGTCATATGGACGATACAAAACTTTAAAAGAACACATACGTAGGATTCATACGTAA
- Protein Sequence
- MDPKGEGRIRISPKLKVAKPVKESKKHLANLKNILQYSNATLIRGKDGDGYKCNFCMKKYQLPKDLKCHFLQEHNDFQTIKLPKIFQYVLKIDITALTCKICSKTFDKLEDFTDHLQGEHKKTIHTDIRNQMIPFKFDSEILRCAICATEFTNYKVLQEHMHVHFRNFVCDVCNSGFVTKRLLVCHKRMHGMEKFKCDHCEKIFSCDRKRRDHEQRIHLGLKKKNKCHFCLEKFADYWTKINHMVKEHGAPPVVLKCQACDRSFSNKRALTRHVKKDHLMERKHVCSICDMKFFLKCRMEDHMAVHTGDKRFQCHVCTRWYMTKKSLGQHLRSHADDRKFTCTKCPQAFVHQNSLDTHMKTKHSSQGRRECHRNRAKLSKQKAIKAPKIEKETDRRTNDKLDTKETLAQKGLKNVSSVIVPRKEVDKHISNIREILLNSNATPIRCHGGQGYACCFCNKQYQNPADLKDHTREQHDEAEKKNFMKGKEMYGYFVKLDITALECKICNAKINTVESIMEHLQEVHKKCMFLDIKNHILPFKFDSEALSCCICCNVFNSFKALLEHVNVHYRNFICQVCDAGFVNKNILLRHGDAHKTGTFACTECSKVFDTARKKKLHVRAQHRGELPHKCGYCAERFKEIWAKKNHMMKVHDIKAPGVKCKACDKHFATKQGWRLHTARVHLMQKNYKCDECDMQFHTKKELVIHIVKHTGTREFTCDICMKSYGRYKTLKEHIRRIHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00288309;
- 90% Identity
- iTF_00288309;
- 80% Identity
- -