Clyc016322.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01001723.1:48892-52467[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.67 54 5.2 2.3 1 23 70 93 70 93 0.93 2 19 0.00026 0.021 15.9 1.0 2 23 117 139 116 139 0.95 3 19 0.036 2.9 9.2 0.7 2 23 162 183 161 183 0.96 4 19 0.044 3.5 8.9 1.7 1 23 187 209 187 209 0.97 5 19 1.2 95 4.4 3.3 1 11 214 224 214 237 0.83 6 19 0.68 55 5.1 1.6 2 23 245 267 244 267 0.95 7 19 6.2e-05 0.005 17.9 1.1 2 23 275 297 274 297 0.96 8 19 0.39 31 5.9 2.7 1 23 303 325 303 325 0.96 9 19 0.037 3 9.1 3.2 1 23 331 353 331 353 0.99 10 19 7.9e-06 0.00063 20.7 2.8 1 23 359 382 359 382 0.98 11 19 0.0056 0.45 11.7 1.6 1 23 471 494 471 494 0.96 12 19 2.3 1.8e+02 3.5 0.0 2 23 521 543 520 543 0.89 13 19 8.6 6.9e+02 1.7 2.5 2 23 566 587 565 587 0.94 14 19 0.28 22 6.4 0.0 1 21 591 611 591 613 0.87 15 19 0.0059 0.47 11.6 0.6 1 23 618 641 618 641 0.94 16 19 0.09 7.2 7.9 1.2 1 23 647 670 647 670 0.97 17 19 0.012 1 10.6 1.1 2 23 678 700 677 700 0.94 18 19 0.00016 0.013 16.5 1.3 1 23 706 728 706 728 0.98 19 19 0.00089 0.071 14.2 1.2 1 23 734 757 734 757 0.98
Sequence Information
- Coding Sequence
- atgaccagcgatttaggtacaGAACAGCAAGATACAGAGCAAAGTCTGTTAAAAGAGGACGGAAAGGGGATAGaacgaataaaaattaatccaAAACTGAAATCTGTAGCTAAACCTGTAAAAGAATCGAAGAAACATTTGgcaaatctaaaaaatatcttGCAATATTCGAACGCGACGCTGATCAGAGGCAAAGATGGTGACGGATACAAATGTAacttttgtatgaaaaaataccAACTCCCCAGAGATCTAAAAACTCACTTTTTACAAGAGCACAACGATTTCCAAACAATAAAGTTGCCTAAGATCTTTCAGTACGTCTTGAAGATTGATATCACGGCCCTAACTTGCAAAATCTGCAGCAAAACCTTCGATAAACTGGAAGATTTCACGAACCATTTGCAACAAGAACACAAGAAAACGATCCACACAGATATTAGAAATCAAATGATCCCTTTCAAGTTTGATTCGGATGTTCTCCGCTGTGCTCTTTGTGCTACAGAGTTCACCAACTACAAAGTTCTTCAAGAACACATGCATGTCCATTTCAGGAACTTTGTGTGTGAGATCTGCAATTCTGGTTTCGTTACCAAACGGTTACTTGTTTGTCACAAACGGATGCACGGAATAGAAAAGTTCAAATGTGACCACTGCGAGAAGATTTTCAGTTGCGATCGGAAAAGACGCGATCATGAACAAAGAATCCATTTGGggttgaaaaagaaaaacaaatgtcATTTCTGCCTTGAAAAATTTGCCGATTATTGGACTAAAATCAATCATATGGTTAAGGAGCACGGAGCGCCCCCTGTCGTAATAAAATGTCAGGCTTGCGAGCGATCTTTCTCGAATAAGCGAGCGTTAACGCGACACGTAAAGAAAGACCATTTGATGGAACGCAAACATGTTTGTAGCGTTTGCGATATGAAGTTCTTTTTAAAGTGTAGGATGGAGGATCATATGGCGGTGCACACTGGCGATAAGAGGTTCCAATGTCACGTTTGTACGCGGTGGTACATGACGAAGAAGTCGTTAGGACAACATTTGAGGTCACACGCGGATGACAGAAAGTTTACGTGCACGAAATGTCCCCAAGCGTTTGTACATCAAAGCAGTCTAGACACTCACATGAAAACCAAGCATAGTTCCCAGGGTAGAAGAGAATGTCATCGTAATCGAAACAAGTTGCCGAAATTCAAAGCTATAAAAGCGCTTAAAATTGAAAAGGAATCGGATAGAAAGACGAATGAAGAGTTAGATACTAAGGAATCATTAACACAGAAAGAATTGAGGAATATTAGCTCTGTTGTTGTTCCACGGAAAGAGGTTGATAAGCATATAAGTAATATTCGCGAGATACTTTTAAATTCGAATGCTACTCCTATCAGATGTCATGGTGGTCAAGGCTACGCTTGTTGTTTTTGCAACGAGCAATACCAAGATCCGGCAGACTTGAAAAAACACACGAGAGAACAACACGACGACACAGCGAAGAAAAACTTCATGAAAGGAAAAGAAATGTACGGCTACTTCGTTAAATTAGACATAACAGCGCTCGAATGTAAGATTTGCGATGCAAAAATCAACACAGTTGAGTCAATAATGGAGCATTTGCAAGAAGTGcacaaaaaatgtatgtttttggaTATAAAAAACCACATCCTGCCTTTCAAATTCGATAGCGAAGCTCTCAGCTGTTGCATATGTTGTAATGTGTTCAATTCCTTCAAGGCTCTATTGGAGCACGTAAATGTCCACTACAGGAACTTTATTTGTCAGGTCTGCGATGCTGGCTTCGTCAACAAGAATATATTGTTAAGACACGGCGACGCTCACAAAACAGGAACATTTGCGTGCTCAGAATGTTCCAAAGTTTTCGATACGGCGCGAAAAAAGAAACTCCACGTGCGCGCTCAACATAGAGGTGAATTGCCGCACAAATGTGGATATTGTGCGGAGAGATTCAAGGAAATCTGGGCTAAGAAGAATCATATGATGAAAGTTCACGATATCAAAGCCCCGGGCGTGAAGTGCAAGGCGTGTGACAAGCATTTTGCTACAAAACAAGGCTGGAGACTCCACACGGCGCGTGTACATCTAATGCAAAAGAACTATAAGTGTGATGAATGTGATATGCAGTTTCACACGAAGAAGGAGTTGGTGATACATATAGTAAAACACACAGGCACGAGGGAGTTCACTTGTGATGTCTGTATGAAGTCTTATGGAcgatataaaacgttaaaagaACACATACGTAGGATTCACACGTAA
- Protein Sequence
- MTSDLGTEQQDTEQSLLKEDGKGIERIKINPKLKSVAKPVKESKKHLANLKNILQYSNATLIRGKDGDGYKCNFCMKKYQLPRDLKTHFLQEHNDFQTIKLPKIFQYVLKIDITALTCKICSKTFDKLEDFTNHLQQEHKKTIHTDIRNQMIPFKFDSDVLRCALCATEFTNYKVLQEHMHVHFRNFVCEICNSGFVTKRLLVCHKRMHGIEKFKCDHCEKIFSCDRKRRDHEQRIHLGLKKKNKCHFCLEKFADYWTKINHMVKEHGAPPVVIKCQACERSFSNKRALTRHVKKDHLMERKHVCSVCDMKFFLKCRMEDHMAVHTGDKRFQCHVCTRWYMTKKSLGQHLRSHADDRKFTCTKCPQAFVHQSSLDTHMKTKHSSQGRRECHRNRNKLPKFKAIKALKIEKESDRKTNEELDTKESLTQKELRNISSVVVPRKEVDKHISNIREILLNSNATPIRCHGGQGYACCFCNEQYQDPADLKKHTREQHDDTAKKNFMKGKEMYGYFVKLDITALECKICDAKINTVESIMEHLQEVHKKCMFLDIKNHILPFKFDSEALSCCICCNVFNSFKALLEHVNVHYRNFICQVCDAGFVNKNILLRHGDAHKTGTFACSECSKVFDTARKKKLHVRAQHRGELPHKCGYCAERFKEIWAKKNHMMKVHDIKAPGVKCKACDKHFATKQGWRLHTARVHLMQKNYKCDECDMQFHTKKELVIHIVKHTGTREFTCDVCMKSYGRYKTLKEHIRRIHT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01360059;
- 90% Identity
- iTF_01360059;
- 80% Identity
- -