Ssim024919.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453082.1:11160149-11163385[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00019 0.018 16.3 3.0 1 23 155 178 155 178 0.98 2 18 4.1e-05 0.0037 18.4 1.0 1 23 187 210 187 210 0.96 3 18 0.015 1.4 10.3 0.6 2 23 223 245 223 245 0.97 4 18 0.00045 0.041 15.1 1.1 1 23 254 277 254 277 0.97 5 18 1.3e-05 0.0012 19.9 1.3 1 23 290 313 290 313 0.96 6 18 4.7e-05 0.0043 18.2 0.8 2 23 339 361 338 361 0.97 7 18 0.0001 0.0095 17.1 3.4 2 23 371 393 370 393 0.97 8 18 0.024 2.2 9.7 0.8 2 19 398 415 397 418 0.92 9 18 0.001 0.092 14.0 0.5 2 21 423 442 423 445 0.95 10 18 0.15 14 7.2 1.9 3 23 455 476 454 476 0.95 11 18 0.0048 0.44 11.9 5.7 1 23 481 504 481 504 0.94 12 18 6.4e-05 0.0058 17.8 1.8 2 23 517 539 516 539 0.97 13 18 0.027 2.5 9.5 1.6 1 23 566 589 566 590 0.94 14 18 0.76 70 4.9 0.2 2 23 596 617 595 617 0.91 15 18 0.15 14 7.2 3.7 3 23 622 642 621 642 0.97 16 18 4.4 4e+02 2.6 2.3 3 23 650 672 648 672 0.90 17 18 0.029 2.7 9.4 0.1 1 23 708 730 708 730 0.96 18 18 0.18 17 6.9 2.0 1 23 736 759 736 759 0.96
Sequence Information
- Coding Sequence
- ATGTCTATTAAGGAAGAaaaagtcaaaataaaaattgaagatGAGTGCGACCGTAAGGATCCGACTTCATTCTTGCCAGAGGAGGAGATGTCTTATGaaattaagaaaaagaaaaagaagaagaaaaaagataaacaagaAGATCCCTTTAAAGATATAGAAGATAAGACAGAGTCACCTGCGGGTGGAGGCGTTGTGATCTTCAATGATGCCACGTTAGACCCAGaagttaatataaaagtagAGAATATTGAAGTAGAATTGGATTTTAATGATTTTGCCAATGACAATGGTCTTATGGTGGAAGGACCACAAAGCGAAGACAGCCAAGAACCTTCAGTCAGATTAGAGCAACAAAACAAAGAAGCGGTGTTATTGACTTTCGAAAGTATTATTAACGAAAACAAAATGTTCGGGATCAGCGAAGCCATTACTTCTAATATGCAGCCGTCAGCGCCTAACTATGTATGCAAAGTTTGCCACCTAGTCTTTCAATCACCTAAAACTTTAAGGATGCACCAGAAACGGAAACACAAAGTGTACCGGCGGTCCTTCAAGCACATTTGCGACTACTGTGGAATGTCGTACGAACAGAAGAATAGTTTAGTCGCCCACATTAAGAGGAAACACGGACCTAATGCTGTACCGGACGACAGGGAGGAACGAACATGCGATGTGTGTGCGCTAGTCTTCAAGGGACTTAATAGGTTAAGAATGCATATGAGACGGAAGCACGGATCCTTCCAAGATTCCTTCAAGCACGTTTGCAACGAATGTGGTCTCACCTACGATAAATACAGGAGCCTCATAGTCCATATTCAAAGGAAACATACAAGCGATAATAAGACAAAAGTGATGAACGAATGGTTTAACTGTCCATTCTGCCCGAAAGTTTTCACGCGACGAGAAACGTACGCGAGACACGTACAAAGAAAGCACCGTATTGACGACGAAAACGAAGATATCAAGCCTGATCTATTGGAGAATTGCAAAAACGAAGAAACTGGAGAGATCACTTGTAAAGAATGCCCTCTAGTCTTTTCATCCCTTAATTTCTTAAAACTGCATATGAGAAGGAAGCACAATGCTCTAAGAGAGGATTTCCGTCTCAAATGCAAAATTTGTCATCTCTCTTACAGTAAGATTGAGAGTCTCAAAAGGCATATACGAAGAAAACACGATAAGGGCTCATACTGTGAGGTTTGCAACAAGCAGTTTGATACACGAGAGTCGTACTTAAACCATTCGCATATGAAAGCGATTAGGGAATGCACAATTTGCGGTTTGATCTTCGCGTCTAAAGGTGGCTTGGGCAAACACATGAGGTGCACTCACAAAGTCGACGAACCGAAAACGGTATTCTGTTCTTTATGCAATGAAGGATTTCACGATAAGAGGCAGCTTAAGCCACACTACATGAAAGTGCATTTGAAAGTGTCGTATACGTGCCACTTTTGCAGTAAGCAATTTAAGGCGAAAGAGAGTTACAGACGGCATATTCTGTTTAAACACCCCAGTCACAATCAGACTAGTAATAGCCAACTTCAGAAATGTGAACGCTGCCCAGAGACATTCAAAGATGAGTTTGAGCTGTGTAAACACATCAACACAGTGCATAGCACTATGGCTCTCGAAAGTGGAACGATGGAGAATGATGTCAAAATCAAAAAGGAAGATCCAGATATTAAAGACTGCTTCCAATGTACAAAGTGTCCAGAGAACTACTTGACGTGGGAACAACTAAGACTGCATTACGAGCAGAACCACCACATGACAGAAGACACACAGTGTCAGATTTGTGGCACCATTATGCCCGCTAACGAGTTGCagaaacatattaaaaacacgCACGCGTTAGCCCATTGCAGATATTGCGAGTTCCAAACAACGAACCGCGCGAGTATGACTCAACACATGCTGCGACATAAAAACGCAACGACATTGCATTGCGACTATACCGGATGCAAATACAAGACGTTTTACGAAGTCGCCATGGAGAAACACAGGCGTAAACACAGAGACATTGGCGTCAAACTCCAATGTTCGCAGTGTCCATTCCAgtcaatgaataaatatatcttaaaatatCACGAAGAAGCACACATGACGGGCAAGAAAAGGTACGCTTGTGACCAGTGCGATTATGCGACAATCTTGCCCGCTAATTTGGTGCAGCACAAGTATAAGCATTCTGCGGAAAAGAGATTCAAATGCGAAGTATGCCCGTTTGCCACGAAGTATAATACGTCGTTGCGCTTCCACGTCAAGAAGAAACATTGTGATCTCCCTACTTTCAgttaa
- Protein Sequence
- MSIKEEKVKIKIEDECDRKDPTSFLPEEEMSYEIKKKKKKKKKDKQEDPFKDIEDKTESPAGGGVVIFNDATLDPEVNIKVENIEVELDFNDFANDNGLMVEGPQSEDSQEPSVRLEQQNKEAVLLTFESIINENKMFGISEAITSNMQPSAPNYVCKVCHLVFQSPKTLRMHQKRKHKVYRRSFKHICDYCGMSYEQKNSLVAHIKRKHGPNAVPDDREERTCDVCALVFKGLNRLRMHMRRKHGSFQDSFKHVCNECGLTYDKYRSLIVHIQRKHTSDNKTKVMNEWFNCPFCPKVFTRRETYARHVQRKHRIDDENEDIKPDLLENCKNEETGEITCKECPLVFSSLNFLKLHMRRKHNALREDFRLKCKICHLSYSKIESLKRHIRRKHDKGSYCEVCNKQFDTRESYLNHSHMKAIRECTICGLIFASKGGLGKHMRCTHKVDEPKTVFCSLCNEGFHDKRQLKPHYMKVHLKVSYTCHFCSKQFKAKESYRRHILFKHPSHNQTSNSQLQKCERCPETFKDEFELCKHINTVHSTMALESGTMENDVKIKKEDPDIKDCFQCTKCPENYLTWEQLRLHYEQNHHMTEDTQCQICGTIMPANELQKHIKNTHALAHCRYCEFQTTNRASMTQHMLRHKNATTLHCDYTGCKYKTFYEVAMEKHRRKHRDIGVKLQCSQCPFQSMNKYILKYHEEAHMTGKKRYACDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00673701;
- 90% Identity
- iTF_00025415;
- 80% Identity
- -