Ssim027652.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453087.1:3299424-3302326[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.88 80 4.8 0.4 1 23 49 71 49 71 0.88 2 19 0.061 5.6 8.4 0.0 2 23 95 117 94 117 0.96 3 19 0.0021 0.19 13.0 3.4 2 23 140 161 139 161 0.97 4 19 0.0082 0.75 11.1 2.6 3 23 167 187 166 187 0.96 5 19 0.0093 0.85 11.0 1.1 1 23 193 216 193 216 0.87 6 19 0.00054 0.049 14.8 1.2 1 23 222 245 222 245 0.92 7 19 0.084 7.6 8.0 2.7 1 23 251 274 251 274 0.96 8 19 0.00011 0.01 17.0 0.4 1 23 280 302 280 302 0.95 9 19 5.4e-06 0.00049 21.1 0.6 1 23 308 330 308 330 0.99 10 19 0.00019 0.018 16.3 4.8 1 23 336 358 336 359 0.96 11 19 0.083 7.6 8.0 0.6 3 23 491 511 489 511 0.96 12 19 0.12 11 7.5 6.7 1 23 533 555 533 555 0.95 13 19 5.9e-05 0.0053 17.9 0.7 1 23 559 581 559 581 0.98 14 19 0.00028 0.025 15.8 0.1 1 23 586 609 586 609 0.96 15 19 0.00018 0.016 16.4 1.3 1 23 615 638 615 638 0.98 16 19 0.0064 0.58 11.5 1.1 1 23 645 668 645 668 0.97 17 19 0.00018 0.016 16.4 1.7 1 23 674 696 674 696 0.96 18 19 2e-06 0.00019 22.5 1.1 1 23 702 724 702 724 0.99 19 19 2.1e-06 0.00019 22.4 2.7 1 23 730 752 730 753 0.96
Sequence Information
- Coding Sequence
- ATGCACACAAGTGCAACGAAATCTGTGCGACGAGTTCAGAACCCTAAGTGGAAAAGGAGACGCAAGTATAACGATCAGAGAGATAACGCGGCGGTTATATTAGAGTTTTCGAACGCTCTCCCTTTCAGGTGGAAACGGGGGACTTACACCTGCGCTTTCTGTTCTCAGTCCTTTGGAGACTTTGCCGGTGTTAAGGAACACTCGACTGAGCATCCGAACAAAATAGAAGCCATGAGACTAGCCAGGCCGTACGATAACATCAAAATCGAAATCTCTGACTTGCGATGTGAGATATGTCTCTTGTCTGTAAAGGGTCTAGATGAACTAAAAGACCATTTAATAACTGAACATTCGAAGCCGATTATAAAGGATCAGGGTATCGGCGTCACTCCGTTTTACCTGAACAATAAAGAGATGAAGTGCACGCATTGTGATGAAACCTTTGAACTATTCACGAAGTTGAACACACACATGAACCAGCACTATCCTAATAACATTTGCTGTCACTGCGGGAAAGCGTTTGTCGCCGCGCATAGACTCAAGGCTCACCAAGTAATTCACGAGTTGGTCGATCAGTATAAATGCACTAAATGCGATCAAGTCTTTCAATCTCGAGCTCTAAGGAATAACCACTTTATTCTTATGCATGGTCCTGAGTTTAGATATAGATGTCCGTATTGCCAGGAATCGTTCAAAAGTTACTCCGATAGGGGGAGACATTTGACGGAATCTCACGGGAAGAAGATAGAGTATCCATGTCATTTGTGTTCAGCGGTTTTCGCTATGTGCAATCAAAGAACCAAACATATAAAACAAGTTCATATCAAACATAAGGCGTTTCTCTGCGAATTTTGTCCTTACAAATTTGTCACTGCGGCTCAATTACGGAGTCATATGGTGAAACATGTGGGAGAGAGGAAGTTTCAGTGTGAAGTGTGCAAGAAAGCATATGCTAGGGTGAAAACGCTGAAGGAACACATGCGAATACATAATAATGATAAGAGGTTTGTCTGCGAGTATTGCAACAATGCGTATGTCCAGAAATGTAGTCTACAGAGCCATATGAAGACTCATCATCCTAACGCGGAACCTTTGAAGAAAATAAAGTTGTCTAATTTTCgaAGAAAAACCGCAGAAGTTGAATTAAAGAAGGTGGAAAGTGAGGACAGTAAATTGTCTGCGCTGATAACAACAGCAGCGCTGGAACTCACTAAGAAAGAAGAGGTGAGGCATAGAACGAGCGAAGGGAATGACAGGCGAGCAGCGTACAGAAGAAACATCAAAATAATCATGAGTTCTTGTACTGCTTACCCTTTCAAATATAGGAAAGGAGCATACTTATGTTTTTTCTGCAAAAACACCTTCTTGGAGCCGGACAAAATGAGAGAACACACACAGCAGCATCATGCAGACGTAACTTTTAAACCTCGAAAATATGAGCCTTTGAAAATGGACTTCGCGATGACAATTTGCAAACTGTGCGGCTTCCGGATAGATAACTACAACACACTAAAGCTACATTTGAAGGAGCACGGAAAAGCTATAGACTTCTCGCACGGCGATAGCATCTTGCCTTATAAACTGAGCCGGGATGAACACTGCTGCCAGATATGTGGAAAACGCTACGAAATGTTTCTCAGCCTACACAAGCACATGAACGATCATTACGAGCATTTTATCTGCGAGATTTGTGGGAAGCGTTTCGCGACGTTACAAAGGATGCTGAATCATACACGGACTCACGAACGAGGGGATTTTCCTTGCAAGCAATGTGGGGAAACGCTACCCACGTATTCGTCACTATACGCTCACATAGCCAAAGTCCACCGTTCAAACAAACGATACAAGTGTCCAATCTGCGACGAGAAGTTTGTCACCTACAAATTCAGGATGAAACATTTGAATACTGTCCATGGAGAAAAAACAGCGACGTTTCCTTGTCCATCTTGTCCGAAGGTGTTCGATCTTTGCAGCCGACGCACAGCACATATACGCTCAAGGCATTTGCAGGAAAGGAACCATGCTTGTACTGAATGCGGCATGAAATTCTTCACGAACTATGAACTGCAAGAACACACGATAAAGCACGTTGGGGCGAGGATATACCAATGCGATGTTTGCAAGAAATCGTACGCGAGACTGAAGACTTTGCGGGAACATATGAAGATTCACAATAATGATAGGAGATTTGTGTGTCCCGTTTGTGGACAGACTTTCATCCAAAAATGTAGTCTCAAACAACATGTCAGGGTACATCATCCCATGCAAATGAAGGCGGATATGTTTTAG
- Protein Sequence
- MHTSATKSVRRVQNPKWKRRRKYNDQRDNAAVILEFSNALPFRWKRGTYTCAFCSQSFGDFAGVKEHSTEHPNKIEAMRLARPYDNIKIEISDLRCEICLLSVKGLDELKDHLITEHSKPIIKDQGIGVTPFYLNNKEMKCTHCDETFELFTKLNTHMNQHYPNNICCHCGKAFVAAHRLKAHQVIHELVDQYKCTKCDQVFQSRALRNNHFILMHGPEFRYRCPYCQESFKSYSDRGRHLTESHGKKIEYPCHLCSAVFAMCNQRTKHIKQVHIKHKAFLCEFCPYKFVTAAQLRSHMVKHVGERKFQCEVCKKAYARVKTLKEHMRIHNNDKRFVCEYCNNAYVQKCSLQSHMKTHHPNAEPLKKIKLSNFRRKTAEVELKKVESEDSKLSALITTAALELTKKEEVRHRTSEGNDRRAAYRRNIKIIMSSCTAYPFKYRKGAYLCFFCKNTFLEPDKMREHTQQHHADVTFKPRKYEPLKMDFAMTICKLCGFRIDNYNTLKLHLKEHGKAIDFSHGDSILPYKLSRDEHCCQICGKRYEMFLSLHKHMNDHYEHFICEICGKRFATLQRMLNHTRTHERGDFPCKQCGETLPTYSSLYAHIAKVHRSNKRYKCPICDEKFVTYKFRMKHLNTVHGEKTATFPCPSCPKVFDLCSRRTAHIRSRHLQERNHACTECGMKFFTNYELQEHTIKHVGARIYQCDVCKKSYARLKTLREHMKIHNNDRRFVCPVCGQTFIQKCSLKQHVRVHHPMQMKADMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00970593;
- 90% Identity
- -
- 80% Identity
- -