Murs000563.1
Basic Information
- Insect
- Megathymus ursus
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000093.1:807828-811523[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.025 1.9 9.4 0.1 1 23 55 77 55 77 0.93 2 19 0.00092 0.07 13.9 0.6 2 23 101 123 100 123 0.95 3 19 0.0056 0.42 11.5 2.6 3 23 147 167 145 167 0.96 4 19 0.0085 0.65 10.9 3.8 3 23 173 193 172 193 0.97 5 19 0.031 2.4 9.1 0.9 1 20 199 218 199 222 0.88 6 19 0.00026 0.02 15.7 1.2 1 23 228 251 228 251 0.92 7 19 0.074 5.7 8.0 2.7 1 23 257 280 257 280 0.96 8 19 0.0001 0.0077 17.0 0.4 1 23 286 308 286 308 0.95 9 19 3.5e-06 0.00027 21.6 0.5 1 23 314 336 314 336 0.99 10 19 0.00017 0.013 16.3 4.8 1 23 342 364 342 365 0.96 11 19 0.046 3.5 8.6 0.4 3 23 497 517 495 517 0.95 12 19 0.19 15 6.7 6.7 1 23 539 561 539 561 0.95 13 19 0.00043 0.033 15.0 1.2 1 23 565 587 565 587 0.98 14 19 0.00029 0.022 15.6 0.1 1 23 592 615 592 615 0.96 15 19 0.00016 0.012 16.4 1.3 1 23 621 644 621 644 0.98 16 19 0.035 2.7 9.0 1.7 1 23 651 674 651 674 0.97 17 19 6.4e-05 0.0049 17.6 1.8 1 23 680 702 680 702 0.97 18 19 1.8e-06 0.00014 22.5 1.1 1 23 708 730 708 730 0.99 19 19 5.5e-06 0.00042 20.9 3.9 1 23 736 758 736 759 0.96
Sequence Information
- Coding Sequence
- atgatTTTCATAAACAACTCACCGCCTTTACAACACTTATGCCaagGGCGCGATCAAAACCCTAAGTGGAAACGGCGACGCAAGTATAACGATCAAAGAGATAATGCTGCtattatattagaattttcAAACGCACTTCCCTTTAGGTGGAAACGGGGAACTTTCACCTGTGCGTTCTGTCCACAATCATTCGGAGACTTTGCAGGTCTCCAAACACACTCAGCTGAGCATCCGAATAAAATAGAAGCTATGCGACTCGCCAGGCCCTGTGACAACGTCAAAATTGAAATCAGCAACCTTCGATGTGAGATATGTCACCAGACCACGAAAAGTCTAGACGCTCTTAGAGACCATTTGATATCGGAACACGCAAAGCCTATTATAAAAGATCAGGGTATCGGTGTTACCCCTTTTTACTTGAATAATAAGGAAATGATTTGCACTCACTGCGATGAAAAATTTGAGTTATTCACGAAGCTGAACACTCATATGAACCAACACTATCCTAATAATATTTGCTGTCATTGCGGCAAAGCATTCGTCGCAGCACATAGACTAAAATCTCATCAACTTATTCATGAATTAACCGACCATTATAAATGCACAAAATGTGAACAAGTCTTCCAAACTAGGGCGCTCAgaaataatcattttgttttagtaCATGGTCCCGAGTGTAGATACAGGTGTCCGTATTGTAATGAATCATTCAAGAGTTACTCAGATAGAGGAAGGCATTTAACAGAGTCTCACGGGAAGAAGATTGAGTACCCATGTCATTTATGCTCTGCAGTTTTTGCTATGTGTAATCAAAGAACGAAACATATTAAGCAAGTCCATATTAAGCATAAGGCGTTTCTCTGCGAATTTTGTCCGTACAAATTTGTTACCGCTGCTCAGTTAAGGAGCCATATGGTTAAACATGTGGGAGAGAGGAAGTACCAGTGTGAGGTTTGCAAGAAAGCGTACGCGAGGGTCAAGACTTTGAAAGAGCACATGCGAATACATAACAATGATAAAAGATTCGTTTGCGAATATTGTAACAATGCATATGTCCAGAAATGTAGTCTGCAAAGTCACATGAAGACTCATCATCCTAACGCAGAGCCTCtgaagaaaataaagataacgACTTTTCgAAGGAAAACTGCAGAAGTACAGATAAATGAAGTGGAATGTGCAGATAAAAAATTGGCTGCGCTTCTTACTTCCGCTGACCTGAAACTTTCAAAGAAAGAAGAGGTGAGACATAAAATCAGCGAGGGAAATGAAAGACGAGCTGTGTATAGGAagaatattaagttaattatgagTTCATGTACCGCTTACCCGTTTAAATACAGGAAAGGAGCGTACTTATGCTTCTTCTGCAAAAGTACTTTCCTGGAGCCGGATAAAATGAGAGAACATACTTTACAACAGCATGCTGATGTAGCCTTCAAACCTCGAAAATATGAGCCTTTAAAAATGGACTTCTCGATGACAATTTGCAAATTGTGCGGCTTTCGagtagataattataatacgttaaaattacatttaatggaTCACGGAAAAGCTATCGATTCCACACACGGTGAGAGTATTTTGCCTTACAAGCTAAGCAGAGAGGAACACTGTTGCCAGGTTTGCGGTAAAAGATATGAAATGTTCCTTAGTCTCCACAAGCACATGAACGATCATTATGAGCATTTTATATGTGAAACATGTGGAAAACGTTTCGCGACGATGCAGAGAATGCTGAACCATACCCGGACACATGAACGCGGTGATTTCCCGTGTAAACAATGCGGGGAAACATTATCAACATATGCGTCTCTATATGCTCATATTGCTAAAGTCCATCGCTCAAACAAACGTTACAAATGTCCAATCTGCGatgaaaaatttgttacatacaaatttaGGATGAAACATCTGAACACAGTTCATGGAGAAAAGACAGCTACATTTCCTTGTCCGTCGTGCCCTAAAATTTTCGATCTTTGCAGTCGTCGTACATCGCATATACGATCACGGCATCTTCAAGAGAGAAATCATGTTTGCAACGAATGTGGCATGAAGTTTTTCACGAATTACGAATTACAGGAACATACGATAAAACATGTCGGTGCTAGGATATATCAGTGTGATGTTTGCAAAAAATCTTACGCTAGGTTGAAGACTTTGAGAGAACACatgaaaatacataacaatGATAGAAGATTTGTGTGTCCGATTTgtgggcagacatttattcaGAAATGTAGTCTCAAACAGCATTTCAGAGTGCATCACCCAATGTTAATAAAAGATATGTTTTAG
- Protein Sequence
- MIFINNSPPLQHLCQGRDQNPKWKRRRKYNDQRDNAAIILEFSNALPFRWKRGTFTCAFCPQSFGDFAGLQTHSAEHPNKIEAMRLARPCDNVKIEISNLRCEICHQTTKSLDALRDHLISEHAKPIIKDQGIGVTPFYLNNKEMICTHCDEKFELFTKLNTHMNQHYPNNICCHCGKAFVAAHRLKSHQLIHELTDHYKCTKCEQVFQTRALRNNHFVLVHGPECRYRCPYCNESFKSYSDRGRHLTESHGKKIEYPCHLCSAVFAMCNQRTKHIKQVHIKHKAFLCEFCPYKFVTAAQLRSHMVKHVGERKYQCEVCKKAYARVKTLKEHMRIHNNDKRFVCEYCNNAYVQKCSLQSHMKTHHPNAEPLKKIKITTFRRKTAEVQINEVECADKKLAALLTSADLKLSKKEEVRHKISEGNERRAVYRKNIKLIMSSCTAYPFKYRKGAYLCFFCKSTFLEPDKMREHTLQQHADVAFKPRKYEPLKMDFSMTICKLCGFRVDNYNTLKLHLMDHGKAIDSTHGESILPYKLSREEHCCQVCGKRYEMFLSLHKHMNDHYEHFICETCGKRFATMQRMLNHTRTHERGDFPCKQCGETLSTYASLYAHIAKVHRSNKRYKCPICDEKFVTYKFRMKHLNTVHGEKTATFPCPSCPKIFDLCSRRTSHIRSRHLQERNHVCNECGMKFFTNYELQEHTIKHVGARIYQCDVCKKSYARLKTLREHMKIHNNDRRFVCPICGQTFIQKCSLKQHFRVHHPMLIKDMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359956;
- 90% Identity
- -
- 80% Identity
- -