Ssim009769.1
Basic Information
- Insect
- Spicauda simplicius
- Gene Symbol
- -
- Assembly
- GCA_949699795.1
- Location
- OX453063.1:6421919-6431765[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.16 15 7.1 1.8 3 23 217 238 216 238 0.96 2 23 0.035 3.2 9.1 0.6 1 22 610 631 610 631 0.95 3 23 5.4 4.9e+02 2.3 0.3 1 22 673 694 673 696 0.82 4 23 0.0033 0.3 12.4 0.4 3 21 707 725 705 726 0.94 5 23 0.95 87 4.6 0.1 2 23 734 756 733 756 0.88 6 23 0.0048 0.44 11.9 0.1 3 23 777 798 775 798 0.96 7 23 0.0061 0.56 11.5 2.4 1 23 804 827 804 827 0.95 8 23 0.1 9.1 7.7 0.0 1 23 854 877 854 877 0.90 9 23 0.015 1.4 10.3 3.4 1 23 882 904 882 904 0.97 10 23 0.0092 0.84 11.0 0.2 1 23 910 933 910 933 0.95 11 23 0.0019 0.17 13.2 1.3 1 23 946 968 946 968 0.97 12 23 0.00014 0.013 16.7 1.8 1 23 1017 1040 1017 1040 0.97 13 23 0.0048 0.44 11.9 1.7 1 23 1102 1125 1102 1125 0.96 14 23 0.0012 0.11 13.8 1.3 3 23 1151 1172 1149 1172 0.95 15 23 0.0023 0.21 12.9 0.1 2 23 1178 1200 1177 1200 0.95 16 23 0.0079 0.72 11.2 0.2 1 21 1244 1264 1244 1265 0.95 17 23 0.00098 0.089 14.0 0.6 1 23 1275 1297 1275 1297 0.93 18 23 7.3e-05 0.0067 17.6 0.4 2 23 1387 1409 1387 1409 0.93 19 23 1.4e-07 1.3e-05 26.1 1.1 3 23 1416 1436 1415 1436 0.98 20 23 0.36 33 6.0 0.2 1 23 1455 1478 1455 1478 0.92 21 23 0.032 2.9 9.3 0.0 1 23 1505 1527 1505 1527 0.98 22 23 0.022 2 9.8 0.6 1 23 1533 1556 1533 1556 0.95 23 23 3.8e-05 0.0035 18.5 0.3 1 23 1564 1587 1564 1587 0.97
Sequence Information
- Coding Sequence
- ATGAATGTGAATTATGATAGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCTATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTGGCATCAAAAATAAGGGACTGCGTTTCCGTTCAGATAAGCGAAAATGACGACCTGCCTACCAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCACATATTTAAGACTGTGTGTGAAAGGACACAAAACAAGCTACAGTCTCTGATTAATAAAGATGGCAGCCAACTAGAAGAGATTAAAGTGAAAAACGAACTTTTGTCAGATGAGGCCTATGATGATGGAGTGGTTATTGATGGCTTATACCCTGATAGTGAGAATGGTGGCACTTTGAACAAGTTGCAACCTGAAGGCCCGCCAATCTTGGCATCATTGGGACTCACACCGAGGAGTGATAAGggTGCAGATAGTGATAAAGATGAcgaggaagaagaagaagatgatGAAGACGGGAATGAGTCTCAAAATTTTCCACCCATAAACATTTCTAACAGACCTAACATTCCCAACATGCCGGAGGTTTCAATCACCGTAATGCGACCCACAGGTGAAACTTTACACTCTCGTCAAGGTATCCAACAACTTGCTTCTAAAGATTGCCTCGTATGCAATCGATCCTACCAATACTCTCATAATGCAAGACGTCATGAACTCACATCACACGGCTTCGATAGATACACGAATAAAATCACACATAAAAAAACTCCTTCGCACATGCAACCAAAACTTCGACCTAATCCATTCAATCCTAAAGCTCGGCTCATGCCTAATCCTATCAGCCATAAAATGCAACTTATCCCAAAGGGCATTTCAACGAAAATTATAAACCCAAAAACTATTGGCCCACCTAAACCAATCCCTATCAAAACTATTAAACCACCGCAGCATATTTTGCCATATCCATTACGTATCAAAGCACTAAAggatttacaaataaaaaagaaagaaccTCAAATTTTGAAAACTCTTCTGACTACTAAGCCAGAAGTTTTAATTTCGGAACCAGAAATAATTAATTCGGGTCCAGAAAGTCCCGAAACATTGATATCCGAACCAGAAATAGCATCGTTTCAAGTAGAAGCTATTCTGTCGGAACCAGATACTTTTGTGAATCAACACGATGACGAAGGCGATGGAGATACGCATCAGTACAAAACAAATAATCATGGGCAGAACTACGATACTGTAGAAATGGACACTGACAATGAAATTGAAATCGCTCGACAGCAGGAAAACGAAGGTGAAGATGAGCAAGTGGAAAATAAAGGAGAAGATACTGAAAATGATAAGCAAATGATGGAAACAAACCGGTATAAACAAGAGCTAACTGAAGATGGAGAAATGCATATTGATGGTGATGTTGATACAAGTAAAATCAACCACGAAATCAAAGAAGAGAAGGATAATGAGGAACAAAACCATGATGAAAATTATGAAGATGATGATGACGACCTACCACCATCGAGCTTGGCTCCTGTTGTAGAAATAAATGAGGATATGCAGGTTAATCCTTACAACAGTGAGATGAATGaagaggaagaagaagaagatttagAATCAGCTGATGCTAATGACACAGTAGATGGCGAAGACAATGCGAAAGACCTTGATCCAGATAAGATTTATGTTACAAAAACTCAACGAGACTTTATAGTAAAGTACCGAGATATAATAGAGCAGATTAATACAAAACGATGTCTTTGTTGTAAAAGGGAACACCCGCGTAGAAAGGCAGTCATTCAGCATTTACAAAAGAATGGCCATAAGGTGCCCAAACATACATGCTACAATTGTGTCGTAACATTTAGTCATATTGGGGCTTTACTCAGTCACATGAGGTCTAATACTTGCACTGATTTgtggaaaataatttataatgaaaatggCATTACGGAAGATCTTGTTTTAGAAGATGAACCAAAGGATCCTAAAATTCAGCCCAAAGATATTTTTAACGCTAGATCATATGCATGCAAATTATGTCCAGCTAAATTTCAGTTGAAACAGTTTATTATGAAACATGTTTTAGATGTTCATGAAGATGGACAATCTAAAGTCACGTTAGCATGTGTTCATTGTGGATCGAGGTTCAAAGATAAAGGTTTGTGGAAGAAACATATTCGGAACGGAGAGTGCACAGTCTATATTTCGTGTGACCTATGTTCAGAAAAGTTTGTTAACATGCAAGATTTTAGCGATCACGCTTTGGCTGTTCATGCTGGCAGCTGCGATCTATCTGATAGTCAGAGCAAATGTGTGGACGGTCGACCAACGGATTGTCCTATATGTGGCAAGAAAAATAGCAGCTATCCGAATTTGGTTAAACATTTGAAGATTATTCATAATGAGGAAAAACCACATTATTGCCAGCATTGTGATTCCAAATACGAACAAGCTGCCGATCTTAACAAACACATTTACATGGAGCATTCTGACAGATCTTTAGGCGTCCAGATTTCAACTGAGCCTGATATGTCGCTCGTCAAAGAAGAAGCGGAAGAATATCATTATTCTTGTACGGAATGCAATGCCATTTTTGAAACGGTGGATgcatggaccgatcatcaagtGGCAGAACATAATCAAGTCGCTCATCACTGTGATCAATGCGAAAAGAAATTTTTACGGCCATCTGAGTTGGCTGAgcataaaaatacacatttgaGGGTGAAATTTTATCCTTGTAACGTTTGTTCCAATTCATATAGCACCCCCCAGAAGCTTTCTGAGCACGTTCAACAAGCTCACCCTGGGTCCGCTGCATACAATTCATTGGACGCAGAATTCTTTTGCGACATTTGTATCAGATCTTTCAAAAGCCGCCAGGCATACTCTAATCATATGCGTATTCATTCTAAAGTACCTACTACTAACAGAAAGCCTGGTGATCCTAAAGGGTTTTCACCACAAATTATTGGAAAGCCTATTCGACACTTTTCTATGGTTCAACCAAGCTTTTTGTCATTTAAGCCAAATTGTAATGTTCCTAATGCTCCTTACTCATGTGATATTTGTGGCAAAGGGTTTATGCATAAGAAAAACATATGGAAACATAAAAAAGTCCTGCACGCTGATCTGATTAATGACAGAAACGATAGTGAAGAGAATACTATGCAAGCCTCTACCGAAGAAGACGACTACAATGTAGATGAAAATGGGTCCATTTTATCAACGCCTCAATTTAACAGTTTTAACTTCACAAACACGACAAATAATATGCAGCAACAACAACCCACACAAGACCCGATGCCATTCTCTTGTGAATTATGTTACAAACGATTTCCTCTTAGAACTAGTTTGTGGAAACACAAACGCGCCAAGCATGGAATAATTAACCCCAGCTCTACAAAGTCGTCTGACTCCCAAGCAACACCTAGCGAATCAACTGGTCGGTCCAATTGTACTATATGCGAGATAAGTTTCTCCGACAAGAGGTCCTATTATCGTCATAGGAAAAATGTTCATAAATCAACTGTACAGATGTGTAAGATTTGCGGTAAACCGCTTAGTTCCACGGGTGAACTTTATGAACATTTGAGAGCTGCTCACGCACAAGAATTGCTGGGCTATAATGCTAGCCAAGGTCCTAGCAAGGCACAAGACATGAGTCAAGAAATGGATCCAGATTACGAACAGGATCAGGATACTATTGATCCTAATGCCGATTATCAAGCACGATACCCGTGCGATACTTGTGGAAAGCAATTTGTTGGACTTCTCGCATTACAAAATCATCAATGCATTAATCAGATGCAATCGCAGCCGCAGACATTTGACTGTGAAATTTGCCATAAAAGCTACACATCTATTGCTGCTCTTAAGAGTCACCGCGGTTGGCATTTACGCTCACCTGACGGTAAAGCTGCTGCTAATAATTCCGGACTTTGGATGCCACAGCGCAAAGTTACAAGTAAAGTAAGTAAGCATGAAGTAGTTGATCCTTCCCAACTGGCGAAGGTGACGCACACACCTCCAAGCGTGGTAGCGAAGCGAAGGTTACCTCCAGAAGTAGAAGTAACCGTTGTTAATCCGAACAAGAAAATGCGATCAGATGATTCTGTGGAAATGGATCAGCAAAACAATTCATCTTCAGGAATCGAAGATAGGTATTGCTCGATATGTGATAAGGAATTTACGAAGCGAGCGGCATTCCAACGCCACATGGATGAGGTTCATCAACCAAACTCAGTGTTCTGTCCTGTTTGTGACAAAAGTTTCACTCGGAAATCGACGTTGATTGTTCACATGAAGAAGCATTACGATGCCGGAGAAGGTAGTTCTACAGGAACAGCTCAGATGGATGACGATGCTCACATATGTGATGTCTGTGAATCGCAGTTCGACAGTGTCACAGAGTTGACTGCTCATCGTATTGAACAACACGGTGAAGGGGATGGCGATGGAGAAGAAACAGGAGAGTCTGAGGAAGAAGCTGTCGATGTAGAACAACCTCCCGGCGAATTCACCTGTAACCAATGTGGCGACGGCGTGGCTACTCCCCGTGATTTGATTGCCCACCGCACCATGCACTCCACACCGACCAAGTTCTTCTGCAATATCTGCAAGGTTTACTTTGCAAGAGCTTTGGATCTCTCGTCTCACACCAGGGCGAGACACTCAGACAACGACAAGGTTTCCTACCCATGTGCCATGTGCGACCGCTCCTATATGAATAAGAAGAGTTTGCAGCGTCACATTGAAATGGCACACTGA
- Protein Sequence
- MNVNYDSVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIRDCVSVQISENDDLPTNVCRKCMDNVNNWHIFKTVCERTQNKLQSLINKDGSQLEEIKVKNELLSDEAYDDGVVIDGLYPDSENGGTLNKLQPEGPPILASLGLTPRSDKGADSDKDDEEEEEDDEDGNESQNFPPINISNRPNIPNMPEVSITVMRPTGETLHSRQGIQQLASKDCLVCNRSYQYSHNARRHELTSHGFDRYTNKITHKKTPSHMQPKLRPNPFNPKARLMPNPISHKMQLIPKGISTKIINPKTIGPPKPIPIKTIKPPQHILPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLISEPEIINSGPESPETLISEPEIASFQVEAILSEPDTFVNQHDDEGDGDTHQYKTNNHGQNYDTVEMDTDNEIEIARQQENEGEDEQVENKGEDTENDKQMMETNRYKQELTEDGEMHIDGDVDTSKINHEIKEEKDNEEQNHDENYEDDDDDLPPSSLAPVVEINEDMQVNPYNSEMNEEEEEEDLESADANDTVDGEDNAKDLDPDKIYVTKTQRDFIVKYRDIIEQINTKRCLCCKREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDPKIQPKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSKVTLACVHCGSRFKDKGLWKKHIRNGECTVYISCDLCSEKFVNMQDFSDHALAVHAGSCDLSDSQSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKYEQAADLNKHIYMEHSDRSLGVQISTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNVCSNSYSTPQKLSEHVQQAHPGSAAYNSLDAEFFCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPGDPKGFSPQIIGKPIRHFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLINDRNDSEENTMQASTEEDDYNVDENGSILSTPQFNSFNFTNTTNNMQQQQPTQDPMPFSCELCYKRFPLRTSLWKHKRAKHGIINPSSTKSSDSQATPSESTGRSNCTICEISFSDKRSYYRHRKNVHKSTVQMCKICGKPLSSTGELYEHLRAAHAQELLGYNASQGPSKAQDMSQEMDPDYEQDQDTIDPNADYQARYPCDTCGKQFVGLLALQNHQCINQMQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQRKVTSKVSKHEVVDPSQLAKVTHTPPSVVAKRRLPPEVEVTVVNPNKKMRSDDSVEMDQQNNSSSGIEDRYCSICDKEFTKRAAFQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDAGEGSSTGTAQMDDDAHICDVCESQFDSVTELTAHRIEQHGEGDGDGEETGESEEEAVDVEQPPGEFTCNQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARALDLSSHTRARHSDNDKVSYPCAMCDRSYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00288228;
- 90% Identity
- iTF_00288228;
- 80% Identity
- -