Spin012027.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_947568825.1
- Location
- OX387619.1:18471904-18491263[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-78 1.1e-73 248.7 18.3 1 297 266 553 266 556 0.87 2 2 1 2.8e+04 -7.0 12.5 2 44 553 595 550 630 0.48
Sequence Information
- Coding Sequence
- ATGGAAGAGTTTGAGGCGACCGAGGCCGAGCAGTTTCCGGGCACTTCAGGGGCTATGCCAGGGTGTCAAGAAAGAAGTACTGACGGACTCTTGTCGCCAATCCTGAATCAAAGAACACCACGCATTTCTACTGGTCATCATGAAGTGCCTACCGGTGAAAACGGTGTATTTCCCAACTGCGGATCAACTGGTAATCACGATCTAAGGGGAGCAGAAACTGTCCCTATTAGTTTCATGCAAAATATGATGCAGGAAATGACTCAATTAATCCGCACTACCGCACAGGCATTTAATCCATCTAATGTACAGCCTGCTCCACGAATGCGAAGTCTTGAGCATATTTATATTCCTTCTTTTGACCCCGATGATCGGACCGATACTGTACAAATCTGGTGCCGAAATATTGAAGAGCTAAAGACTGAATATGTGCTAACTGATCGGGAAATTCTTAATCTAGCTCGAAAGAACTTAAAAGGGCGAGCTGCTGACTGGGCACGCCGTAATTATTGTGCTTTGACTAATTGGTCTGAACTTAAAACAGGCCTCATCGAAACTTTTGCAGATGAATCTCGATATTATGATGATTTAACACAGTTTATGGAATATACCAGCGAACAAGCCGGTAACCTCGCCGAATATGCAACTAGGAAATGGGAATTGGCAAAAAAAGTGATTGGTGTGGAGATGACTGAACAACGCCTCGTCGAAGCAGTTATTTCTGGGGGCGCGCATCTGTCGACAGATCAGACGCTGTCCAACAGTGGATACGGCACAACAGGTGCTCTGAACTGTCAGGCGGAACAGCGTTTGGCAGCGCGTCGAGCGGCGCGGGCAGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGAGACAGCAACGCGAGCAAGAAGACCATGCAGACAAGGCCTATGATATGTATGCAGAGACGGTGGGCCGCCGCGCCGGCGGGCGGCTCGCGGCGCTCAGCCCCGGCGTCGTGCACTCGCCGCGCCGCAGCTCCGAGGACTCGGTGGACGACGGGTTCAGCGTCAAAGACCTCAGGCACGAGCTGAAAGAGGTGGAGGAGAAGTTCCGCAAGGCCATGATCCTGAACGCGCAGCTGGACAATGATAAGGCGGCTCTCGGCTACCAGTTGGAGCTGCTCAAGGATAGGATAGAGGAGCTGCACGAGGAGTACGCACAGCTGCAGCGCGAGCACAGAGAGAAGTGTTCGGTGCACGAGCGCCTGAAGCGGTCGCACGTGTCGCTGGAGCGCGAGGTGGAGGCGGCGCGCGGCGCGGTGCGGGCGCGGGACGCGGCGGCGCACGCGGCGGGGTTCGCGTTCGTGGACGCGGCGGGCGCGGGGGGCGCGGGGGGCGCGGGGGACGCGGACACACCCGCCGACAACGCGCCGCCGCTCGCGCTCGTCTCGCACCGCGCCGAGCAGCTGCTCAACGACGCCGGAGAGGGCACGCTCGATGTGCGATTGCAAAATCTGGTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCCAGGCACAACGGCGTCTCCAACCACCACGACCACGAGTACGAGGGGGAGCTGGAGGCGCTGCGCAAGTCGGTGTCGGAGGCGAAGGCGCGGGCGGCGCGCGCGGAGGCGGAGGCCGCGCTGCAGGGCGCCGCCACCGCGCGCCTCGAGGCACAGCTGCAGCGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGCGAGGCAAGAGAAGCTCTCAACCGAGTCGAGGAGTTGGAGACGGAGAACAGTCACCTGACGAAACGGCTCGACAAACTGAAGAACGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MEEFEATEAEQFPGTSGAMPGCQERSTDGLLSPILNQRTPRISTGHHEVPTGENGVFPNCGSTGNHDLRGAETVPISFMQNMMQEMTQLIRTTAQAFNPSNVQPAPRMRSLEHIYIPSFDPDDRTDTVQIWCRNIEELKTEYVLTDREILNLARKNLKGRAADWARRNYCALTNWSELKTGLIETFADESRYYDDLTQFMEYTSEQAGNLAEYATRKWELAKKVIGVEMTEQRLVEAVISGGAHLSTDQTLSNSGYGTTGALNCQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPGVVHSPRRSSEDSVDDGFSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSVHERLKRSHVSLEREVEAARGAVRARDAAAHAAGFAFVDAAGAGGAGGAGDADTPADNAPPLALVSHRAEQLLNDAGEGTLDVRLQNLVSSKQALESEVRKLKLQLNEERAARHNGVSNHHDHEYEGELEALRKSVSEAKARAARAEAEAALQGAATARLEAQLQRLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -