Basic Information

Insect: Sphenella marginata
Gene Symbol: Trerf1
Assembly: GCA_951509765.1
Location: OX608079.1:96891535-96909346[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00018 0.027 16.4 0.2 2 23 299 320 298 320 0.97

2 6 2.1e-06 0.00033 22.4 1.3 1 23 326 348 326 348 0.99

3 6 0.00017 0.026 16.5 2.6 1 23 354 378 354 379 0.95

4 6 0.00091 0.14 14.2 0.8 2 23 620 641 619 641 0.97

5 6 0.0023 0.35 12.9 0.1 1 23 1799 1823 1799 1823 0.97

6 6 0.00012 0.019 16.9 0.8 1 23 1921 1943 1921 1943 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00018	0.027	16.4	0.2	2	23	299	320	298	320	0.97
2	6	2.1e-06	0.00033	22.4	1.3	1	23	326	348	326	348	0.99
3	6	0.00017	0.026	16.5	2.6	1	23	354	378	354	379	0.95
4	6	0.00091	0.14	14.2	0.8	2	23	620	641	619	641	0.97
5	6	0.0023	0.35	12.9	0.1	1	23	1799	1823	1799	1823	0.97
6	6	0.00012	0.019	16.9	0.8	1	23	1921	1943	1921	1943	0.98

Sequence Information

Coding Sequence: ATGTGTAGCGCATCCGTCGGCACTGAGGGTTCTGTAACACTACAATTGCGAGACTCATCCGATTCCAATCAGTCACCGGCGTCAACATCTTTAGAAAATGCCTTAACCATTGGCTATCCGGATCCAGATATGTTGGCCGATGTATTCGGTTCATTACAGGCAGCCTCATTCAAGAATCACAGCAGTGCCattagtagtagtagtagtagtggCATTAGCAGCAgcaataacaaaataacaatCACAAGCAGCACAAGCACAAACACGAATAAcaattccaacaacaacaacataaacagTCCGCCGAGCAATTGTAACAATACTACCTCTGCCTCAGCACCTGTTAATAAAATCACAATAAGTCGTCGCAATCAaagtacagcaacaacaacaacaacaacggtagCAACAGCATCAGCAATTGCCACTGGTACAACAGCAATaagcacaacaataacaacagcagcATCAACAATAACTCCGACAACGGGTAAATTAACCGTACAAACTGTATCCACAGCAACAAATACCACCAATAAAACGAGCAGCAGTTACGTGAAAAATTGCTTAATACGTAGCAGCAGTTGCATCAATACAAACAACGTCACATCGTTGGCGCAAATAATGAGCAATAGCAGTACCAGCAGCTCTACGTCCCTCTTGAATCACAGCAATACGAATAGTAACAGCAATTGTAGCAGTAATAGCAATTTTAGTTCGTCGAGCAGTAGCAACGATAGCATCGTTAGTATTAATAGCAACACCAGcgctggtggtggtggtggtttgAAAAGTGGTGGCAGTAGCAAAGGTAGCGGTGCGAATGGTGTGACGAGTGCCACATCGAAGAAAAGTCGCCCCAAATTATCCTCACCAACACGACATGGTCCGCAGCAATGTCAGATTTGTAGTAAAATCTTTGGAAATGCGTCAGCACTGGCCAAACATAAACTGACGCACAGTGACGAGCGTAAATACGTTTGTGCGATGTGTTCGAAAGCATTCAAGCGACAAGATCACTTGAATGGCCACATGATGACCCATCGTAATAAAAAACCCTACGAATGCAAAGCAGAAGGCTGTGGTAAATCCTATTGTGATGCACGTTCCCTGCGACGTCACACTGAGAATCATCATTCGGGTATTATAACGCCACAAAATCAAACACTCTCACCAACCTCGGGTACACCGACTGGTCTAAGTCTATCACCAGCCACAGCAAGCGGAGATGCCAGTTCGCCAGATGGCGCCACATGTATACGCACTTACATTTCCACCGGTGGTGCAATAGTTGATGCCACCACAGGTGTAGCACTTACTGAAGAACAAATTAAAGCTATAAATCTGCCCATTAAAACTGGTGTTACATTGCTTTCGCCAACATCCACATCGTCTGCATCGTCAGTGGGTGGCATATCTTTACCTGCCTCATCACCAACAATCGCACTAACCGAAACGAATATTGTGGATGCCAGCGAAGGTTTGACTCGTGAGCAATTAGATTTGATTAGTAAGATTATGAAACAAACGAATCAGACAAGCGCACAGGTGACGGTATCATCACCAACCAGCATTAATTCATATAAAGTGGATACAAATCCCTCGGGCAATACAATTGGTGCAGCGAGTCCACAGCATACGGTGAATGGCGCATCAAGTCGTCCACGCACTTGGAATATGCAATTGTTGAATACGGCGCAAAATGTATCCATTACCGTTGATGAATCCAATTCCGATGCGACATCCAGTACAGCCACATCACCTATTGAAACCAAAGAGGAAGAGATTAATCAACAATTTGTAACAGCCATCAATCCACATCTTCTCAACATTGTCAAGATGGATCAAAAGCCGGTTGAATGTAATTTGTGTcatcgaaaatttaaaaacataccAGCACTTAATGGACATATGCGCTTACATGGcggttatttcaaaaaagacCCAGAGACTAAAAAGACAGAAAAGAAAGAACCAAGCGGACCACCGCTGCAAACAGCCAGTATTGGCGTGCGTGCGTTGATTGAAGAGAAAATCATCAGCAAACGCAAAGACATGAACAAGGGTGCCTTCGTAGTTCCTGCACCACCCAGTAGCGTTTCCAGCACATCCACAATCCGACGATCGATTAGCGATCTAGAAAGTTTCCTTAGTCCCAAatccaataataataacaacggTAATAGTGTTGTTGGCGGCAGTAGTGCCAATCATTCGTCAAATCAAAACACGCCCACCACTACCACAACAAATATGCTacctacagcaacaacaataagaaacTATGGTAGTGGTAGTACAATAGGCTTGCAACAAATTGGCATGTCACAGGGCATTGAGATCTTCAGCCACAAGCATCAAAAGACAGTTAGCCTTGGTTTGGGCGTAAATTTGAATGCGTCACAACAAGCGTGTAACCCAACGATTAATCCGccaacaataaaagcaacagcaacgacaaatacaaatacaacgaCAACCAAAGGCACATCGACCGATCCAAAAGACTCAACACTGATCGAGTTACTAAAACGTGGCACCCGCATCGCTGTCACTGCCAAAAAATCACTAAATAGTACAAACGCAATCACGAATGTGGGCAATGGCAATAGCGGCACGACGCGCCAAATAATCACCAATAACAATCGTACGGTAATTATACCATCCGATGTGCAGGTCTTACCCACACGTAGTATGACCAAACCGAGAGCCAGCACGACATCAGCTAGCTTAGCGTTGAGCGATACGACGCCACTCTCACTTACCATCTCACAAAATGGCGACAGCAATATGAGTGGTGATGTTTATACAGTGACTTATAGCAGTGATACATCGGGCTTTTTCGATGATGCCGAAGTTTATAATGTCGCCGATACCGATATGCTATTGCAAACTGTAGATACGATGCAATTACTCAATGATGACTCGCAACAATTAAAAGGCGAACATTCCGAACAATTTGACACTGTGACTAGTGTTAATATCGCTGAGAGCGAACAAAATCCGAATAGCGGTACATGCATACAGACAGATTTCTTGAAGTTAGAAACTGATAGTGCAGTCTCAACTATACCCAACACACTACCCACGTTCCAACAATTCCATTCCAAAGAGCTCATCATGCAAAATAGTGCCCAAATACAGGCTGTGACAAGTATGCGAACACAACAAACGCATCAATTGGGTACAATGTCCTCACCAATCAATTCACCACTTGCATATCCCACACCGCCATCCAGTCATGAAAATATGACACAATCGTCACCATATGTGGAGGATGGTGGACATCAGTATTCCGAAGTGGCGAATAgattttttaataatgaaaaatgTGGCAACGAGTTTTTAACGCAACCAACAACAACCGAAGTGACATTCTTCAAAAGTAATGACAATCAGCAGGGTGAGCTAACTGATACCGAGAAGATATTGAAACTAAAGACAGTGTTGGAGGATAGCGCTTTTGATGGTTCGATTAAAGTTGAAGACCTATTGAATAGCACGCAAGACGATGACACTGAGTGTGATTTGCGTGATTTTGCTGAGAGCAATTTGGCATTCTTGGATGAGGATCAAGAGTTTCTAAACGATTCGCGTAACGCCACTTCGCCCTTGCCCGAGTCCTTCTTCACTGGCAGCATTGGTACTGCGGATGAAGTGAAAGAGGTATTACGTGATGTGCTACCCGATGAGAATATCAATCTCAATTGCGAGGAACAATCGGGCGAGAATATCATCGACTTGTATTATCTACCGGGTTTGGGATTGCAATCGCAAATGATGCCCAACTCGGATGATCCACTATTGTCTTCATCGCCACGCGATTTTGGACAACAGCGTGGACAAGTTATACAAACCACACAGCAAGTgcagctgcaacaacaacaacagcaaacaacgCAACAgctgcagcaacaacaagcgcagcagcagcagcagacgTCACAGCAACACGCGCAGACACTTGCAACAGCGTCACAAATCCAGCAGACTACACAACAATTACTCTATGCACAAAGTATAgaacaacaattgcaacaacaacaacaacaacaacaaacgactGCTGTCGCATCCTATGTAGGAGGCAATCAAGTTGTAGTGGGCATGCCACAAGCAGTCAGCGACGTCAATTGCACCAATACGAACCTACACTACAATCTACAGAATCTACCACAAgtacaaaaccaacaacaacaacaacaacaatttatagaTGCCAACACACCCATACAGCATGTAACGACACTCGATTGTGGCTCTGGTGGTGGCAGCATGCTACATCAACAGCTTGTCTTCACTGGTTCCACAGACAAGCAGGAAATTCATATAAGCGGAGAATCTGGCGATATCGGTCTGCTGTCAATTAATGGCGCCTTGCATGcggatacaaatatttattttgctagCAATTCAAACAATTCCAACAACACCATACTTGCGCTACAACAACCGAGCAATGCAACAAACGCTAACAATAGCGCGTCCACTGCGTCCACCTCCACGTTATGTCTGCCACCAGCGGCTGCCACAGTTATCTCAACATTACAACCCCTGTCCAATCAAACCAATTCCATATTGAAACGTCGCTTGCGTCCACATAATTCAAATGATTCAAGTAATTCACAAAGTTTTGCCAAGTATCATCCGCTCTCGCCGTATCGCTCTAAACTGCGTAAACCATCTCGCACACATTACACACCAGCGCCCATACTCAATCCCGATCGTAAGGGTATTGGTTTGTATTGTAGCGTGCGCAAACAGTTGAGTACTGGTTTGCTTGGTTTTGAGAGTTTCGTTGATGATTTTGATGATTCAGTTGGATTGGTTGACTTTTCTGATGAATCGAAGGTTAATCTCGGCTCTGCATATCAAGCACAAATACCAGCTTGTCGTGAGCGTATGCCAAGCGCTGGCAGTGATACGGCCACGGATGGTGATTTATGTAAAACGAATTCATATTTTGATATTGAAGAGCCAATTGGTGCAGAACAGTTGTGGGATCCCACCGTGCAAACCGATGATAAGATTTTAATGCGCTACATTGACCTGAGCAAATCATCAGCCGTACCATTGGGTAGTCATTCTGAGGAGGTGGCGCTACAAACGCTATTGAGAGCACACGGCAATATGGCAGCAGCGGTATTAACGCTCTTGCAAACACAATCAAATGCATTCCAAATGAAATGGTCCGCAACAGAATTGGAGGTGTTCTTGAAGGGATTGGAGAGGCATGGCAAGGACTTTGGACGCATTTCGTTGGAGTTGGGTTCCAAAACGACCGGAGAGTGCGTCCAAATGTATTACTTCTGGAAGAAACTTTGCGTCGACTATAAAGTGTCGCATCTGAAGACAGAaacaccaccaccgccaccagCAAATGATCCCAAGCCGTATGTATGCGAAGTTCCTGATTGCTCTGCGAGCTTCACCTCAAAAGCTGCCCTGCATGGCCACACACGCATTCATACGTATGGCAGAAATGCTAATaatcacaataacaacaacaacaacaataataataacaatcatcatatccacaacaacaacaacaataatggcACAAGCAATACAACCAATACTATGAATGGCACTGCAATGAGTGGCTCAACAAATATTGTTCAaccgaacaacaacaacaacaacaacagcaacaacattggTACTTCACAAACTGGTAATATTGCCACCGGTGCTAGCAACGTGCTAACTAAAGATGCTAATCCAAGTGGAGCTAATACAACAAATAAGGACACCGAATTTCCCTGCAAGGTGTGCGGCAAAGTTTTTAATAAAGTGAAGAGCAGAAGTGCGCATATGAAGACACATCGtgtacaagaacaacaacaacagcatttgcaacaacaacaacaacagcagcagcaacaacaacaactagctgCCGAAGCATCAGCCATGGCGCGCAATTCCATTGCGTCTGCACAAAATCAATCCCTAAATACAAATCAAAATCAACAgcggcagcaacaacaacaacaacaacaaccgccaaTTGAGCAAACATCCTGA
Protein Sequence: MCSASVGTEGSVTLQLRDSSDSNQSPASTSLENALTIGYPDPDMLADVFGSLQAASFKNHSSAISSSSSSGISSSNNKITITSSTSTNTNNNSNNNNINSPPSNCNNTTSASAPVNKITISRRNQSTATTTTTTVATASAIATGTTAISTTITTAASTITPTTGKLTVQTVSTATNTTNKTSSSYVKNCLIRSSSCINTNNVTSLAQIMSNSSTSSSTSLLNHSNTNSNSNCSSNSNFSSSSSSNDSIVSINSNTSAGGGGGLKSGGSSKGSGANGVTSATSKKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYVCAMCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSGIITPQNQTLSPTSGTPTGLSLSPATASGDASSPDGATCIRTYISTGGAIVDATTGVALTEEQIKAINLPIKTGVTLLSPTSTSSASSVGGISLPASSPTIALTETNIVDASEGLTREQLDLISKIMKQTNQTSAQVTVSSPTSINSYKVDTNPSGNTIGAASPQHTVNGASSRPRTWNMQLLNTAQNVSITVDESNSDATSSTATSPIETKEEEINQQFVTAINPHLLNIVKMDQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKKTEKKEPSGPPLQTASIGVRALIEEKIISKRKDMNKGAFVVPAPPSSVSSTSTIRRSISDLESFLSPKSNNNNNGNSVVGGSSANHSSNQNTPTTTTTNMLPTATTIRNYGSGSTIGLQQIGMSQGIEIFSHKHQKTVSLGLGVNLNASQQACNPTINPPTIKATATTNTNTTTTKGTSTDPKDSTLIELLKRGTRIAVTAKKSLNSTNAITNVGNGNSGTTRQIITNNNRTVIIPSDVQVLPTRSMTKPRASTTSASLALSDTTPLSLTISQNGDSNMSGDVYTVTYSSDTSGFFDDAEVYNVADTDMLLQTVDTMQLLNDDSQQLKGEHSEQFDTVTSVNIAESEQNPNSGTCIQTDFLKLETDSAVSTIPNTLPTFQQFHSKELIMQNSAQIQAVTSMRTQQTHQLGTMSSPINSPLAYPTPPSSHENMTQSSPYVEDGGHQYSEVANRFFNNEKCGNEFLTQPTTTEVTFFKSNDNQQGELTDTEKILKLKTVLEDSAFDGSIKVEDLLNSTQDDDTECDLRDFAESNLAFLDEDQEFLNDSRNATSPLPESFFTGSIGTADEVKEVLRDVLPDENINLNCEEQSGENIIDLYYLPGLGLQSQMMPNSDDPLLSSSPRDFGQQRGQVIQTTQQVQLQQQQQQTTQQLQQQQAQQQQQTSQQHAQTLATASQIQQTTQQLLYAQSIEQQLQQQQQQQQTTAVASYVGGNQVVVGMPQAVSDVNCTNTNLHYNLQNLPQVQNQQQQQQQFIDANTPIQHVTTLDCGSGGGSMLHQQLVFTGSTDKQEIHISGESGDIGLLSINGALHADTNIYFASNSNNSNNTILALQQPSNATNANNSASTASTSTLCLPPAAATVISTLQPLSNQTNSILKRRLRPHNSNDSSNSQSFAKYHPLSPYRSKLRKPSRTHYTPAPILNPDRKGIGLYCSVRKQLSTGLLGFESFVDDFDDSVGLVDFSDESKVNLGSAYQAQIPACRERMPSAGSDTATDGDLCKTNSYFDIEEPIGAEQLWDPTVQTDDKILMRYIDLSKSSAVPLGSHSEEVALQTLLRAHGNMAAAVLTLLQTQSNAFQMKWSATELEVFLKGLERHGKDFGRISLELGSKTTGECVQMYYFWKKLCVDYKVSHLKTETPPPPPANDPKPYVCEVPDCSASFTSKAALHGHTRIHTYGRNANNHNNNNNNNNNNNHHIHNNNNNNGTSNTTNTMNGTAMSGSTNIVQPNNNNNNNSNNIGTSQTGNIATGASNVLTKDANPSGANTTNKDTEFPCKVCGKVFNKVKSRSAHMKTHRVQEQQQQHLQQQQQQQQQQQQLAAEASAMARNSIASAQNQSLNTNQNQQRQQQQQQQQPPIEQTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00993057;
90% Identity: iTF_01357884; iTF_00992538; iTF_00993057;
80% Identity: iTF_01357884;