Basic Information

Gene Symbol
Trerf1
Assembly
GCA_951509765.1
Location
OX608079.1:96891535-96909346[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.6e-09 1.3e-05 26.7 0.1 2 45 1728 1771 1727 1772 0.94

Sequence Information

Coding Sequence
ATGTGTAGCGCATCCGTCGGCACTGAGGGTTCTGTAACACTACAATTGCGAGACTCATCCGATTCCAATCAGTCACCGGCGTCAACATCTTTAGAAAATGCCTTAACCATTGGCTATCCGGATCCAGATATGTTGGCCGATGTATTCGGTTCATTACAGGCAGCCTCATTCAAGAATCACAGCAGTGCCattagtagtagtagtagtagtggCATTAGCAGCAgcaataacaaaataacaatCACAAGCAGCACAAGCACAAACACGAATAAcaattccaacaacaacaacataaacagTCCGCCGAGCAATTGTAACAATACTACCTCTGCCTCAGCACCTGTTAATAAAATCACAATAAGTCGTCGCAATCAaagtacagcaacaacaacaacaacaacggtagCAACAGCATCAGCAATTGCCACTGGTACAACAGCAATaagcacaacaataacaacagcagcATCAACAATAACTCCGACAACGGGTAAATTAACCGTACAAACTGTATCCACAGCAACAAATACCACCAATAAAACGAGCAGCAGTTACGTGAAAAATTGCTTAATACGTAGCAGCAGTTGCATCAATACAAACAACGTCACATCGTTGGCGCAAATAATGAGCAATAGCAGTACCAGCAGCTCTACGTCCCTCTTGAATCACAGCAATACGAATAGTAACAGCAATTGTAGCAGTAATAGCAATTTTAGTTCGTCGAGCAGTAGCAACGATAGCATCGTTAGTATTAATAGCAACACCAGcgctggtggtggtggtggtttgAAAAGTGGTGGCAGTAGCAAAGGTAGCGGTGCGAATGGTGTGACGAGTGCCACATCGAAGAAAAGTCGCCCCAAATTATCCTCACCAACACGACATGGTCCGCAGCAATGTCAGATTTGTAGTAAAATCTTTGGAAATGCGTCAGCACTGGCCAAACATAAACTGACGCACAGTGACGAGCGTAAATACGTTTGTGCGATGTGTTCGAAAGCATTCAAGCGACAAGATCACTTGAATGGCCACATGATGACCCATCGTAATAAAAAACCCTACGAATGCAAAGCAGAAGGCTGTGGTAAATCCTATTGTGATGCACGTTCCCTGCGACGTCACACTGAGAATCATCATTCGGGTATTATAACGCCACAAAATCAAACACTCTCACCAACCTCGGGTACACCGACTGGTCTAAGTCTATCACCAGCCACAGCAAGCGGAGATGCCAGTTCGCCAGATGGCGCCACATGTATACGCACTTACATTTCCACCGGTGGTGCAATAGTTGATGCCACCACAGGTGTAGCACTTACTGAAGAACAAATTAAAGCTATAAATCTGCCCATTAAAACTGGTGTTACATTGCTTTCGCCAACATCCACATCGTCTGCATCGTCAGTGGGTGGCATATCTTTACCTGCCTCATCACCAACAATCGCACTAACCGAAACGAATATTGTGGATGCCAGCGAAGGTTTGACTCGTGAGCAATTAGATTTGATTAGTAAGATTATGAAACAAACGAATCAGACAAGCGCACAGGTGACGGTATCATCACCAACCAGCATTAATTCATATAAAGTGGATACAAATCCCTCGGGCAATACAATTGGTGCAGCGAGTCCACAGCATACGGTGAATGGCGCATCAAGTCGTCCACGCACTTGGAATATGCAATTGTTGAATACGGCGCAAAATGTATCCATTACCGTTGATGAATCCAATTCCGATGCGACATCCAGTACAGCCACATCACCTATTGAAACCAAAGAGGAAGAGATTAATCAACAATTTGTAACAGCCATCAATCCACATCTTCTCAACATTGTCAAGATGGATCAAAAGCCGGTTGAATGTAATTTGTGTcatcgaaaatttaaaaacataccAGCACTTAATGGACATATGCGCTTACATGGcggttatttcaaaaaagacCCAGAGACTAAAAAGACAGAAAAGAAAGAACCAAGCGGACCACCGCTGCAAACAGCCAGTATTGGCGTGCGTGCGTTGATTGAAGAGAAAATCATCAGCAAACGCAAAGACATGAACAAGGGTGCCTTCGTAGTTCCTGCACCACCCAGTAGCGTTTCCAGCACATCCACAATCCGACGATCGATTAGCGATCTAGAAAGTTTCCTTAGTCCCAAatccaataataataacaacggTAATAGTGTTGTTGGCGGCAGTAGTGCCAATCATTCGTCAAATCAAAACACGCCCACCACTACCACAACAAATATGCTacctacagcaacaacaataagaaacTATGGTAGTGGTAGTACAATAGGCTTGCAACAAATTGGCATGTCACAGGGCATTGAGATCTTCAGCCACAAGCATCAAAAGACAGTTAGCCTTGGTTTGGGCGTAAATTTGAATGCGTCACAACAAGCGTGTAACCCAACGATTAATCCGccaacaataaaagcaacagcaacgacaaatacaaatacaacgaCAACCAAAGGCACATCGACCGATCCAAAAGACTCAACACTGATCGAGTTACTAAAACGTGGCACCCGCATCGCTGTCACTGCCAAAAAATCACTAAATAGTACAAACGCAATCACGAATGTGGGCAATGGCAATAGCGGCACGACGCGCCAAATAATCACCAATAACAATCGTACGGTAATTATACCATCCGATGTGCAGGTCTTACCCACACGTAGTATGACCAAACCGAGAGCCAGCACGACATCAGCTAGCTTAGCGTTGAGCGATACGACGCCACTCTCACTTACCATCTCACAAAATGGCGACAGCAATATGAGTGGTGATGTTTATACAGTGACTTATAGCAGTGATACATCGGGCTTTTTCGATGATGCCGAAGTTTATAATGTCGCCGATACCGATATGCTATTGCAAACTGTAGATACGATGCAATTACTCAATGATGACTCGCAACAATTAAAAGGCGAACATTCCGAACAATTTGACACTGTGACTAGTGTTAATATCGCTGAGAGCGAACAAAATCCGAATAGCGGTACATGCATACAGACAGATTTCTTGAAGTTAGAAACTGATAGTGCAGTCTCAACTATACCCAACACACTACCCACGTTCCAACAATTCCATTCCAAAGAGCTCATCATGCAAAATAGTGCCCAAATACAGGCTGTGACAAGTATGCGAACACAACAAACGCATCAATTGGGTACAATGTCCTCACCAATCAATTCACCACTTGCATATCCCACACCGCCATCCAGTCATGAAAATATGACACAATCGTCACCATATGTGGAGGATGGTGGACATCAGTATTCCGAAGTGGCGAATAgattttttaataatgaaaaatgTGGCAACGAGTTTTTAACGCAACCAACAACAACCGAAGTGACATTCTTCAAAAGTAATGACAATCAGCAGGGTGAGCTAACTGATACCGAGAAGATATTGAAACTAAAGACAGTGTTGGAGGATAGCGCTTTTGATGGTTCGATTAAAGTTGAAGACCTATTGAATAGCACGCAAGACGATGACACTGAGTGTGATTTGCGTGATTTTGCTGAGAGCAATTTGGCATTCTTGGATGAGGATCAAGAGTTTCTAAACGATTCGCGTAACGCCACTTCGCCCTTGCCCGAGTCCTTCTTCACTGGCAGCATTGGTACTGCGGATGAAGTGAAAGAGGTATTACGTGATGTGCTACCCGATGAGAATATCAATCTCAATTGCGAGGAACAATCGGGCGAGAATATCATCGACTTGTATTATCTACCGGGTTTGGGATTGCAATCGCAAATGATGCCCAACTCGGATGATCCACTATTGTCTTCATCGCCACGCGATTTTGGACAACAGCGTGGACAAGTTATACAAACCACACAGCAAGTgcagctgcaacaacaacaacagcaaacaacgCAACAgctgcagcaacaacaagcgcagcagcagcagcagacgTCACAGCAACACGCGCAGACACTTGCAACAGCGTCACAAATCCAGCAGACTACACAACAATTACTCTATGCACAAAGTATAgaacaacaattgcaacaacaacaacaacaacaacaaacgactGCTGTCGCATCCTATGTAGGAGGCAATCAAGTTGTAGTGGGCATGCCACAAGCAGTCAGCGACGTCAATTGCACCAATACGAACCTACACTACAATCTACAGAATCTACCACAAgtacaaaaccaacaacaacaacaacaacaatttatagaTGCCAACACACCCATACAGCATGTAACGACACTCGATTGTGGCTCTGGTGGTGGCAGCATGCTACATCAACAGCTTGTCTTCACTGGTTCCACAGACAAGCAGGAAATTCATATAAGCGGAGAATCTGGCGATATCGGTCTGCTGTCAATTAATGGCGCCTTGCATGcggatacaaatatttattttgctagCAATTCAAACAATTCCAACAACACCATACTTGCGCTACAACAACCGAGCAATGCAACAAACGCTAACAATAGCGCGTCCACTGCGTCCACCTCCACGTTATGTCTGCCACCAGCGGCTGCCACAGTTATCTCAACATTACAACCCCTGTCCAATCAAACCAATTCCATATTGAAACGTCGCTTGCGTCCACATAATTCAAATGATTCAAGTAATTCACAAAGTTTTGCCAAGTATCATCCGCTCTCGCCGTATCGCTCTAAACTGCGTAAACCATCTCGCACACATTACACACCAGCGCCCATACTCAATCCCGATCGTAAGGGTATTGGTTTGTATTGTAGCGTGCGCAAACAGTTGAGTACTGGTTTGCTTGGTTTTGAGAGTTTCGTTGATGATTTTGATGATTCAGTTGGATTGGTTGACTTTTCTGATGAATCGAAGGTTAATCTCGGCTCTGCATATCAAGCACAAATACCAGCTTGTCGTGAGCGTATGCCAAGCGCTGGCAGTGATACGGCCACGGATGGTGATTTATGTAAAACGAATTCATATTTTGATATTGAAGAGCCAATTGGTGCAGAACAGTTGTGGGATCCCACCGTGCAAACCGATGATAAGATTTTAATGCGCTACATTGACCTGAGCAAATCATCAGCCGTACCATTGGGTAGTCATTCTGAGGAGGTGGCGCTACAAACGCTATTGAGAGCACACGGCAATATGGCAGCAGCGGTATTAACGCTCTTGCAAACACAATCAAATGCATTCCAAATGAAATGGTCCGCAACAGAATTGGAGGTGTTCTTGAAGGGATTGGAGAGGCATGGCAAGGACTTTGGACGCATTTCGTTGGAGTTGGGTTCCAAAACGACCGGAGAGTGCGTCCAAATGTATTACTTCTGGAAGAAACTTTGCGTCGACTATAAAGTGTCGCATCTGAAGACAGAaacaccaccaccgccaccagCAAATGATCCCAAGCCGTATGTATGCGAAGTTCCTGATTGCTCTGCGAGCTTCACCTCAAAAGCTGCCCTGCATGGCCACACACGCATTCATACGTATGGCAGAAATGCTAATaatcacaataacaacaacaacaacaataataataacaatcatcatatccacaacaacaacaacaataatggcACAAGCAATACAACCAATACTATGAATGGCACTGCAATGAGTGGCTCAACAAATATTGTTCAaccgaacaacaacaacaacaacaacagcaacaacattggTACTTCACAAACTGGTAATATTGCCACCGGTGCTAGCAACGTGCTAACTAAAGATGCTAATCCAAGTGGAGCTAATACAACAAATAAGGACACCGAATTTCCCTGCAAGGTGTGCGGCAAAGTTTTTAATAAAGTGAAGAGCAGAAGTGCGCATATGAAGACACATCGtgtacaagaacaacaacaacagcatttgcaacaacaacaacaacagcagcagcaacaacaacaactagctgCCGAAGCATCAGCCATGGCGCGCAATTCCATTGCGTCTGCACAAAATCAATCCCTAAATACAAATCAAAATCAACAgcggcagcaacaacaacaacaacaacaaccgccaaTTGAGCAAACATCCTGA
Protein Sequence
MCSASVGTEGSVTLQLRDSSDSNQSPASTSLENALTIGYPDPDMLADVFGSLQAASFKNHSSAISSSSSSGISSSNNKITITSSTSTNTNNNSNNNNINSPPSNCNNTTSASAPVNKITISRRNQSTATTTTTTVATASAIATGTTAISTTITTAASTITPTTGKLTVQTVSTATNTTNKTSSSYVKNCLIRSSSCINTNNVTSLAQIMSNSSTSSSTSLLNHSNTNSNSNCSSNSNFSSSSSSNDSIVSINSNTSAGGGGGLKSGGSSKGSGANGVTSATSKKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYVCAMCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSGIITPQNQTLSPTSGTPTGLSLSPATASGDASSPDGATCIRTYISTGGAIVDATTGVALTEEQIKAINLPIKTGVTLLSPTSTSSASSVGGISLPASSPTIALTETNIVDASEGLTREQLDLISKIMKQTNQTSAQVTVSSPTSINSYKVDTNPSGNTIGAASPQHTVNGASSRPRTWNMQLLNTAQNVSITVDESNSDATSSTATSPIETKEEEINQQFVTAINPHLLNIVKMDQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKKTEKKEPSGPPLQTASIGVRALIEEKIISKRKDMNKGAFVVPAPPSSVSSTSTIRRSISDLESFLSPKSNNNNNGNSVVGGSSANHSSNQNTPTTTTTNMLPTATTIRNYGSGSTIGLQQIGMSQGIEIFSHKHQKTVSLGLGVNLNASQQACNPTINPPTIKATATTNTNTTTTKGTSTDPKDSTLIELLKRGTRIAVTAKKSLNSTNAITNVGNGNSGTTRQIITNNNRTVIIPSDVQVLPTRSMTKPRASTTSASLALSDTTPLSLTISQNGDSNMSGDVYTVTYSSDTSGFFDDAEVYNVADTDMLLQTVDTMQLLNDDSQQLKGEHSEQFDTVTSVNIAESEQNPNSGTCIQTDFLKLETDSAVSTIPNTLPTFQQFHSKELIMQNSAQIQAVTSMRTQQTHQLGTMSSPINSPLAYPTPPSSHENMTQSSPYVEDGGHQYSEVANRFFNNEKCGNEFLTQPTTTEVTFFKSNDNQQGELTDTEKILKLKTVLEDSAFDGSIKVEDLLNSTQDDDTECDLRDFAESNLAFLDEDQEFLNDSRNATSPLPESFFTGSIGTADEVKEVLRDVLPDENINLNCEEQSGENIIDLYYLPGLGLQSQMMPNSDDPLLSSSPRDFGQQRGQVIQTTQQVQLQQQQQQTTQQLQQQQAQQQQQTSQQHAQTLATASQIQQTTQQLLYAQSIEQQLQQQQQQQQTTAVASYVGGNQVVVGMPQAVSDVNCTNTNLHYNLQNLPQVQNQQQQQQQFIDANTPIQHVTTLDCGSGGGSMLHQQLVFTGSTDKQEIHISGESGDIGLLSINGALHADTNIYFASNSNNSNNTILALQQPSNATNANNSASTASTSTLCLPPAAATVISTLQPLSNQTNSILKRRLRPHNSNDSSNSQSFAKYHPLSPYRSKLRKPSRTHYTPAPILNPDRKGIGLYCSVRKQLSTGLLGFESFVDDFDDSVGLVDFSDESKVNLGSAYQAQIPACRERMPSAGSDTATDGDLCKTNSYFDIEEPIGAEQLWDPTVQTDDKILMRYIDLSKSSAVPLGSHSEEVALQTLLRAHGNMAAAVLTLLQTQSNAFQMKWSATELEVFLKGLERHGKDFGRISLELGSKTTGECVQMYYFWKKLCVDYKVSHLKTETPPPPPANDPKPYVCEVPDCSASFTSKAALHGHTRIHTYGRNANNHNNNNNNNNNNNHHIHNNNNNNGTSNTTNTMNGTAMSGSTNIVQPNNNNNNNSNNIGTSQTGNIATGASNVLTKDANPSGANTTNKDTEFPCKVCGKVFNKVKSRSAHMKTHRVQEQQQQHLQQQQQQQQQQQQLAAEASAMARNSIASAQNQSLNTNQNQQRQQQQQQQQPPIEQTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00993057;
90% Identity
iTF_01358381;
80% Identity
iTF_01358381;