Smar022470.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- -
- Assembly
- GCA_951509765.1
- Location
- OX608079.1:117821565-117829323[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.067 10 8.3 1.3 1 23 1856 1879 1856 1879 0.96 2 12 0.34 52 6.1 1.1 1 23 2060 2082 2060 2082 0.96 3 12 0.00032 0.049 15.6 2.5 2 23 2085 2106 2085 2106 0.97 4 12 3.1e-05 0.0048 18.8 0.2 3 23 2114 2134 2112 2134 0.98 5 12 2.8e-06 0.00043 22.1 3.7 2 23 2141 2162 2140 2162 0.97 6 12 9.4 1.4e+03 1.5 0.4 5 23 2175 2193 2173 2193 0.96 7 12 0.0088 1.4 11.1 0.3 2 23 2232 2252 2231 2252 0.96 8 12 0.00025 0.038 15.9 0.8 1 19 2258 2276 2258 2280 0.93 9 12 6.9e-06 0.0011 20.8 1.1 1 23 2288 2310 2288 2310 0.98 10 12 0.00018 0.027 16.4 7.6 1 23 2316 2338 2316 2339 0.96 11 12 0.0017 0.25 13.3 6.5 1 23 2344 2366 2344 2366 0.98 12 12 0.0029 0.45 12.6 6.0 1 23 2372 2394 2372 2395 0.96
Sequence Information
- Coding Sequence
- ATGGGGGAAAACGTGCAGTGCCCAGTATGCACTCTATTTTTGCATGCTGGCATGAACCTGTCAGACCATTTAGAGACACATCCTAAGGAACAAGTGATTAAAGCACTTGTCCAAATGACCATTACAGGCAGCATTGGTATAGCTGCAAGTAAAGCGCTTTCGGCATCCTTAAGTGGCGGTGGAGTCGAGACCAAAAAAGAACcagacgaaaataaaaaaattccaacactaatcTCTGCCGATGCAGCTGAAGCGGCTACCAATGCAGCATCCAACAGTTTATCTAATTTGGAAACTGTTAGCAAAACAACCGccaacaaccacaacaataGTCCAAATGTTGCGTTTGGTTTTAGTGCTATACCAGCAATAAACAAATCATTAGCATCAAACACAGCTTCAGTGCCAATATCATCTCCTGCGGCCGCAAAGACACTTGGCGAAATGTGTGTAAAGAACGATGTAGAACATAAACTTGATGCAGCTAATGGGATTGATAACAAGATTACAGTTTCAATTGAAACAGCTGCACAGGCACCAGCGCCACCTAGTGCGCTTGGTCAACTGGCGCCAAGTGCCAGGTTCGATAGTTATGCTGCGTCTGGTTATCATCAAACGCATCAAAAACAATTATCAATAAGTCAATTAGAtccgcaacaacaacagaaacaacTACAACCACCGCCAAgccagcagcaacaaaaacaaaaacagcagcATATTGAAAATGCAGCTATAGGTAATGCAATTGTACAGCAGCGCATTACGTTGCCCCCACCTCCTCCACCAATGATTACAATGCCGATTGTAATCGGCCAAATGCCGAATAAATTGTTACATCAATCGCATGCAACAAATCAATTTCCAAGCAATCTGTCTACACATCGCCACGTTCCAATGCACCCAGTTCAGCAGTCAAATCAACAGCTCCAACATTTATATCAGCAACAGCAAACGCAGCAAAATCACAATCAGCAGCAACATCAACAGCAACAGAACCTCAAAATATATTATTCTGCAGCTATGCCAACACCACCCCCTGGACTACAGCTATTCCCTTTCCACGCATCAGCACAAATGCAACATCAGAAACCACCGCCTGCTTATGGTACAGCGATAAGTCAAATTCGATCTCAACataaccaaaataaaaataatcataccACTATAGACAAAAGCCATATACCACATCAACAACAGTTGCACAATCAGCAAAACCACCAacggcagcaacaacaacagcagcaacagcaccaacagcaacaacaacaccaacagcaacaacaacagcaccagcagcagcaacaacagcagcagcaacaacaccagcatcaacaacaacagcagcagcagcagcaacaacataaacaacaacaacgtcaaacACAGCAACATAAACAACAGCAGCAGGAGCAACAGAAACAGCATCATCTCCAACAGCTACAGCtgctccaacaacaacaactgcagcaAGAGCAACCACAACAGCTGCCGCTACCGCTCCACAACCAACAGCGTTCAACAATACATCCAATGGCGCACCAACAATCTCTGCAATCAAGCCACCAACAGAACCTTGAAAATATAGCAGCGTTGAGTGTGAAACCTATACTTGAAGCCAAGCCGACTGAATTACTTCTACCGCCGCCTCCTCCACCGACACGGGCAATAAATAATTTACATCATCAGTTGCCACATACTTTGTCACAGTTTGGATTACCGATTAAGTCTTTAACTCCTACACACCAACGTAGTGCAAATACATCTGACACAAGTACTGTAACCAGTGCCACAATATCAAATCAGCAGACACAACCCACAGCTACAGCAGTTAATAACTCTGCAGGAGCTGGTACACCTGCCATTATATCTGTCGCATCCGCTGGTGGTATACGACAAGTCACTTCGCCATACAATTCAATGCTATTTTCAGCAGCACAAGCGCAATCGTCATCCTCGGTATTGCGCTATGCTGAATCTCCGGTGGCACATTATTTGGAACGGGACAATGGAGATTTTATTGTACAAGAAACACCCAAACACATTGTCGAATGCGTTGAGAAGGAGAATGGAGAGTTTTCGGTTATTGAACATATTTATCAGTCGCCATTAAGCGTTTTACACATACatgaagatgatgatgatgatgacgatgttGTTGATGATGATAATGGTGCTGAAAGTGATATGAAGGACAACGACAAAAAGAAGGTTAACACAACTGTTgaagatcaaaaaaataaaggtGGCGAAGAGCCGATGGATCTCGAAGAATGCGTTGAAGGTTCGAAAAGTGAAGGTAATGCGAACGAGAAGTGTGGGCGATTATCTAGAAGCTATGCTGCAAAACATGTAGAAATGAATGAAAAGGGCGCTTCCACCGACAATGAAAAGGTGCAAACAAAACTGACTGGCAATGATAGTAAAATAAAGCACGATAGAAACATTTCTTCTGGTGGCACAGCCGTAAATTCTGCCAGTACAGATATAAGTTGTGATCCCAGTTCAACTTcgaattcaaattcaaataccACCAACGAATCTAATGTAATGTGCAGTACATCATCAAGTTCCAACCCAAGTCCCAATCCTCACTCATCTGCAGCGGGCACATCAAGAAAACGTAGCTCTAAGAATACGATAACAGTGTTAAGCGATGTACAATTAAATTTGGATGAATACCTCGATTTAGTCGGAAATATTATAGCATCGAGTAAAATATCACCAAAAAGTAGTATGCTTTCAGGGTCTATGCCTTTACCTTTGTTAAAAGTCGAAAAAGAAGAACCGCCGGATGATGACTACGAAATGCAGAACAAGCAACAAGACGATCAAAATGTCGATGAACATGGAAATGAAGAATATTGTGAAAACCAAAATGAGCTTAAAGATTTCCATGCGCCAGCTGTAATCGAACCACCTACAATCGCCAACATAAATGAGACTGAAAAACTAGTTGAAAATAATTGTAGTAGCAATAAAGTTAGACTAAATGATAATGAGAATGATAAAAATGCTATGAGTGATGTCATGTTGCATTTACAAAATACCAATAACTTAATGGCAATGCCATTGAAACCCATCGCATCGCCATCAACATCCATCGCACCACCACCATCAACTACAACATCAACATGTTCGAGTCATGTGACAAGTGTTATACGCATGGCAACGActagtcaacaacaacaacagcagcagttCCAAAAGGAGCTAGGACATCAACAAAGAAACGTTTCAAAAGCAAGCGAAACTACATCTGTAACTGAACCGAAGATAACATCAATTATTATTCAAGATCTATCCCGACAACATATTATACAACTTCAAGAACAAGAGGAACAAACGGAAACTGCTAAGCAGCCACAGCAGATACTTGATGCGCAAGATGCTATCGGCTTGGCAAATGCGAAACAGGAGTTGGAGCCAGTAGTGCAGCTGCAGCAGTATAAGCAGATGCCTCCAATGATTACACTGCCAGTGCAGAAAAAGGGTCCAAAGAAGCTTATTATCAAGCCAAAATCAAAAAAGACTGATGCAAATGAAAAcctgaacaacaacaacagcaacaaaaatagaGATATACAACTTCGAAAAACGAGTGAAATGCAAGAAGAAGAACCTTTAGATGAGCAACCCACAACATCATCCAGAGCACAAATGGAATTGCAAGAAAAAATTCATCAGCAGACTAAACAAAACGAAGAGCACGTGAAACATCCAATGGTAGCACATGATTTGATAAAATTGGAGCCAAGCACACCATCATATGATTGCAATACTAATCGAGTTGGTCTCAACATTCTTGGAAATCACCTGAGTGCATACAGTAAAGAACCGATTTTTCAATGTAAAACTGAAAAATCATCCGACCCACCAACCAACTATTTACATCCTTTAAAAGAGGAACTAAAAGAGACGAGTAATTCAAATAATGATGCAGCTGTAAATGATGACGCACGcgttttgttggattttgctCACTCAAAGAAGCGCACGAATCTTGCGAATTTTCTCTCTGTCAATTCGATTTTTTCAAACTCACCAAAAACATTAAATGAACccaaaccaaaaacaacaactacagcaGCGACACTTACTAACATGAATACAAATAGCAACGATTCAGAAACAGATTTACGTTGTGATGATGAATTTATAGCCCACGATGAAGTGCAAGAGATTGTTATATCATCATCTTATTCGCAATCTCAATCAGCATCAGATATACCAATTAATAATTCGAACAATAGCACAGTATCGCAGGTTAAAGATTTAAGTATTGTTAATAAAGAACAACACCGTCAAGATcatcagcaacagcaacagcaacaacaaaatttaaatcacAATTTTGCGGATTATCCCTTTAGTTTCCTGTATGGTGCGGCGGGTGGTGGCGGCAGTACACAGCAAATAGATGCCAAAAGTGGCAATTTCTCTGCAATATATCAGCAGGAGGCAGCACAGGATGCTACTACAGCAGCAACACTTGCATCTGGTAGTAATACAGTGCATACTGACGAGTCCACCAGTTCgacacagcagcagcagcgccGGTCCCATGCCACTACGAATCACTTTGGCGATGTACACGCTGCTAGTGGTGAATTAGGCGGCAATGCGTCACATTGGTATCATCATGCAATGGCAACAGCAAATGCTGATTTTGGAACAACATTAGCAGTGGACTGTAGTGCAGCAATAGATAGCGGGGAAGTGGGTAAATATTTGGATTTAGATACTTGCAAACGTGAGGCTCTAGTTGGTATGCCAGCTGCACATTCCTCAACTTCTTCGTCTTTTGCTGTGGCCACAGACAGCAGTTTGGCTGGAGGTAGTACAGCTGATGCACTAAATATACGTACGGATGAGAAGATGCCGGCAAAAGGTGAAATATCAGGACAGGAAAGTAATTGCGATATTGAAAATTCATGGAGTCAGCCGATGTACGGCGAAATTTCCGCACGATTTTTCAAAACTACCTTTCCTGGCATATTTCACCAAGAAAATGGTTGGAACCAGGATGAATACTTCACAGTACAGGATTTGAGCGCCTCAGCTGCTGCATCAGGCAATGCGACCGCTTCTAATCGCAACGCCGGCAAAAGcTTTGATTTCCGCCTTCCTTTGGAAACAACTACCTCAGCTGCAGCAAATACCATAGGCAATGGAAATGGCAATTTCCAACTATTTGCTCGTCATGCAGATGCATTGCCATCGTCATCTATTTCGAATAAAAAGAAACGTAAACGCGACGGTTCCGGTGGTAGTGATGCTAATATTGTTGGTAGAATTGAAAAAGCGACACCATCACGCATTCAACCAACAGCTACAATAACGTCACAACAATTGTTGTtccatcaacaacaacagcaacagcagaaCAATCAACATCAGCAACAATTACAGGTACATGCACAATTGCAAGATATCAGCCTGAACATTGCAACTTCAACAGCAGCATTTAACACGAGTGGTAATACGAATTCAACCGCCGATACTGATGCTGACAACGCCAATACTTTGTTAATTGTTGATCAAAGGCGACAACGCAAGAAAGTTTATCAATGTACACATTGCACAGCTGAATTTCCGAAACTTAAAGATCGTAATTCGCATATGGTAATGGAACATAATTATGTGCGTCAAAATCGTCGATTAATATGTGTTCAGCGCCCGGGTGTCAGTTCAACTGCTACAGCACCTTCATCATTGTCATTATCAAATACAAATGCCGTCATTGGTAGTGCGAATAATGCGATGATCTTAAATATGGATAACGGTTACAATAACAACCTTGTACGAGCAAATGGTGTGGAGGATTCAAAGCATGATATTATTAAAATTGAGGTAGAAAATGTATATCAACCGACAGCTGGTTCTGTGCTTGCGCCAGGCACTGCTGGTGGTATTCAAGCCAAGAAAGAATTAACGGATAACAAACAGGACATACCATTAATGCCTGCGGGAAGTTCAAATGCACATAATGAAAATGCTGATGGTGTCACTGATGTGGTGGATACAAAACCCAGACATATTCTACCGCTAGGAATGACAACTCCAGCAACAAAATTGGCTGCACTCTATCGTATGTTGGTATCGTACAATATTTCAACACTTAAAGATAATCACAATCTAAGTGAACTGGAACAAAAACTCATTGAACAATCCATATTTTTCTGTTATGTGTGCCGTCGTAATTTCACATCAGTCAAATTATATGATGCACATTTGAATGAGCATCCTGCCGAATGTTTCACGTGCGGTAAAACCTTTCAGCGTTGGAAGAATTTTTCATTGCATTTGAAACGTCATTTGGGATGGAAAGAGTTTGGTTGTAATGTGTGCGATAAAAAGTTTGTGGTGCGCAGCGCACTGGTTGAACATATGCGCATGCATACCGGACATACACCACTTAAGTGTAAAATATGTGGCAAGTACTTTAAACGTTACTCGAACTTGACGCAACATCGCAAACGTCATGGTAAGAAAATCATACGTAAGAAAGAATATGTTTGTCATTGTGGTGAAGTTTTGCCATCTAAAGCGCGTTTCCTGTGGCATAAGGAAACACACGATGCTAAACCAAAATGTTGCCCCCATTGTTGTGATCGTTTTGTACATGCAAATTCATTGCGCCGTCACATACGTTTAGCGCATTCCGATAAATTCGACTATACCGAACCAATGGAGTGTCCTTTATGCAAGCAAACTTTTGCTAAATCCTCCATGAAAGCGCACATGGCCACACATTCAATGGATACACAACATGATTGCGCTATATGCAATAAATCATTTTCCACAAAATGGAATCTGAAAATTCATTCTTGGGTGCATGCTAATCGTACCGCTAAACCATACAAATGCGAACACTGCCCAAAAGCGTTTGTGCGTGAAGTTGATTTCAAGAATCACATGAATGCACATAAACAAATCAAACCATATACATGCGAATATTGTGGTTGTAAATTcattagaaaatataattatatGCGTCATCGACGTGAACATCATGGTAATAAGAAATTTACCTGTGACCTGTGCAAAAAATCCTTCCATCGGCATTATTATCTCATCGAGCATCGACGCATACATACAGGCGAACGACCATTTCAATGTACCATATGCGGCAAAAGTTCCACAACGAAAACAAATCATaataaacatttgaaaatacatCATTCGCGTGATCCCTTCACCGTAGAGGCGTAA
- Protein Sequence
- MGENVQCPVCTLFLHAGMNLSDHLETHPKEQVIKALVQMTITGSIGIAASKALSASLSGGGVETKKEPDENKKIPTLISADAAEAATNAASNSLSNLETVSKTTANNHNNSPNVAFGFSAIPAINKSLASNTASVPISSPAAAKTLGEMCVKNDVEHKLDAANGIDNKITVSIETAAQAPAPPSALGQLAPSARFDSYAASGYHQTHQKQLSISQLDPQQQQKQLQPPPSQQQQKQKQQHIENAAIGNAIVQQRITLPPPPPPMITMPIVIGQMPNKLLHQSHATNQFPSNLSTHRHVPMHPVQQSNQQLQHLYQQQQTQQNHNQQQHQQQQNLKIYYSAAMPTPPPGLQLFPFHASAQMQHQKPPPAYGTAISQIRSQHNQNKNNHTTIDKSHIPHQQQLHNQQNHQRQQQQQQQQHQQQQQHQQQQQQHQQQQQQQQQQHQHQQQQQQQQQQHKQQQRQTQQHKQQQQEQQKQHHLQQLQLLQQQQLQQEQPQQLPLPLHNQQRSTIHPMAHQQSLQSSHQQNLENIAALSVKPILEAKPTELLLPPPPPPTRAINNLHHQLPHTLSQFGLPIKSLTPTHQRSANTSDTSTVTSATISNQQTQPTATAVNNSAGAGTPAIISVASAGGIRQVTSPYNSMLFSAAQAQSSSSVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKENGEFSVIEHIYQSPLSVLHIHEDDDDDDDVVDDDNGAESDMKDNDKKKVNTTVEDQKNKGGEEPMDLEECVEGSKSEGNANEKCGRLSRSYAAKHVEMNEKGASTDNEKVQTKLTGNDSKIKHDRNISSGGTAVNSASTDISCDPSSTSNSNSNTTNESNVMCSTSSSSNPSPNPHSSAAGTSRKRSSKNTITVLSDVQLNLDEYLDLVGNIIASSKISPKSSMLSGSMPLPLLKVEKEEPPDDDYEMQNKQQDDQNVDEHGNEEYCENQNELKDFHAPAVIEPPTIANINETEKLVENNCSSNKVRLNDNENDKNAMSDVMLHLQNTNNLMAMPLKPIASPSTSIAPPPSTTTSTCSSHVTSVIRMATTSQQQQQQQFQKELGHQQRNVSKASETTSVTEPKITSIIIQDLSRQHIIQLQEQEEQTETAKQPQQILDAQDAIGLANAKQELEPVVQLQQYKQMPPMITLPVQKKGPKKLIIKPKSKKTDANENLNNNNSNKNRDIQLRKTSEMQEEEPLDEQPTTSSRAQMELQEKIHQQTKQNEEHVKHPMVAHDLIKLEPSTPSYDCNTNRVGLNILGNHLSAYSKEPIFQCKTEKSSDPPTNYLHPLKEELKETSNSNNDAAVNDDARVLLDFAHSKKRTNLANFLSVNSIFSNSPKTLNEPKPKTTTTAATLTNMNTNSNDSETDLRCDDEFIAHDEVQEIVISSSYSQSQSASDIPINNSNNSTVSQVKDLSIVNKEQHRQDHQQQQQQQQNLNHNFADYPFSFLYGAAGGGGSTQQIDAKSGNFSAIYQQEAAQDATTAATLASGSNTVHTDESTSSTQQQQRRSHATTNHFGDVHAASGELGGNASHWYHHAMATANADFGTTLAVDCSAAIDSGEVGKYLDLDTCKREALVGMPAAHSSTSSSFAVATDSSLAGGSTADALNIRTDEKMPAKGEISGQESNCDIENSWSQPMYGEISARFFKTTFPGIFHQENGWNQDEYFTVQDLSASAAASGNATASNRNAGKSFDFRLPLETTTSAAANTIGNGNGNFQLFARHADALPSSSISNKKKRKRDGSGGSDANIVGRIEKATPSRIQPTATITSQQLLFHQQQQQQQNNQHQQQLQVHAQLQDISLNIATSTAAFNTSGNTNSTADTDADNANTLLIVDQRRQRKKVYQCTHCTAEFPKLKDRNSHMVMEHNYVRQNRRLICVQRPGVSSTATAPSSLSLSNTNAVIGSANNAMILNMDNGYNNNLVRANGVEDSKHDIIKIEVENVYQPTAGSVLAPGTAGGIQAKKELTDNKQDIPLMPAGSSNAHNENADGVTDVVDTKPRHILPLGMTTPATKLAALYRMLVSYNISTLKDNHNLSELEQKLIEQSIFFCYVCRRNFTSVKLYDAHLNEHPAECFTCGKTFQRWKNFSLHLKRHLGWKEFGCNVCDKKFVVRSALVEHMRMHTGHTPLKCKICGKYFKRYSNLTQHRKRHGKKIIRKKEYVCHCGEVLPSKARFLWHKETHDAKPKCCPHCCDRFVHANSLRRHIRLAHSDKFDYTEPMECPLCKQTFAKSSMKAHMATHSMDTQHDCAICNKSFSTKWNLKIHSWVHANRTAKPYKCEHCPKAFVREVDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDLCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992923;
- 90% Identity
- -
- 80% Identity
- -