Smar033605.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sphenella marginata
Gene Symbol
RREB1
Assembly
GCA_951509765.1
Location
OX608081.1:26863569-26870491[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.063 9.6 8.4 2.0 1 21 3 23 3 25 0.95
2 14 0.00038 0.058 15.4 0.1 1 23 35 57 35 57 0.98
3 14 2.9e-05 0.0045 18.9 7.5 1 23 63 85 63 85 0.98
4 14 0.39 59 5.9 1.9 2 19 372 389 372 389 0.96
5 14 0.012 1.9 10.6 0.1 2 23 405 427 404 427 0.94
6 14 0.011 1.6 10.8 0.1 1 23 605 627 605 627 0.97
7 14 2.9e-05 0.0045 18.9 1.3 1 23 637 659 637 659 0.99
8 14 0.00078 0.12 14.4 2.2 1 23 665 688 665 688 0.97
9 14 0.0037 0.58 12.2 2.0 1 23 1019 1042 1019 1042 0.95
10 14 0.00011 0.017 17.1 0.3 2 23 1420 1441 1419 1441 0.97
11 14 0.18 28 6.9 6.3 1 23 1447 1470 1447 1470 0.97
12 14 2.3 3.5e+02 3.5 4.4 1 23 1589 1612 1589 1612 0.97
13 14 0.011 1.6 10.8 0.5 3 23 1667 1687 1665 1687 0.96
14 14 0.0017 0.26 13.3 4.8 1 23 1693 1715 1693 1715 0.99

Sequence Information

Coding Sequence
ATGAAGTTTGTGTGTACTATATGCGAAGTGGTTTCGGCAACGCGTCACGAATTCACAAATCACATCCGATGTCATAATTACGCTTCGGGTGATACTGAAAACTATACATGCGCCATATGCTCAAAGGTGCTATCTTCCGCCTCCTCGTTGGATCGACATGTTTTGGTGCACACTGGCGAACGACCATTTAATTGTAAATATTGTCACCTCACCTTCACCACCAACGGTAATATGCACCGTCACATGCGTACGCACAAGCAGCATCAGCACAATCATCATCATCGGCGCAACTCGAATGGAACAAAGCATAATAACAATAGTcatagcaataacaacaatagcacAATGTCTGGTAATGTCACTAACGCAACGCTGAGCAATGGCTCCACCAACTATGCACctgccaccaccaccaacaacaacgcCACTTATAAGCAATTAAGCCACGAGCTGCTTGGCGAAGGTGTCAAATCATCAACAGCGGCAACCGCAGCAGCAGCGTCAAGTGAAGCCATGGAAGCAATTAAAATGACAGATGTTACTATTGGGGGAGGTCTGCTTGGCAGTGTGACGACAGGTGGCGCTGCTAATGCAGGTGTTAATGGTAAACGCTTACACAGCAGTGGGGTCGAAAGTTGCGAAAGTGATGGTGGTTGCTCAACGGATTCCTCATCAAGTGCCATCAGTCATAGCTCaaataatcataatcataataataataataacaacaacaacaactacaataatGACAACATCAACAATAAtattaacaacaacacaagCGAAAAGCGCAATATTTTCGGTAATTTTAGGCGTAAAAGCAACGAACAACATGATGAAATGGATATGGACGCCGAGTACGATGCTGGCAGCATAACAACAACGCTAAAACGGCGCATGAAGacaacaataaacaataatGTTATCGCTGCAGATGTGGATGAACTGGATGAGCAACGTAAATCGCTAGCAACAGCCTCCGAGGATGATGAGGCGCACGAGCAGAAACCCTCATTCGCCTGTCCCATTTGTCCGGTCTGCAATGCGGGCGACTTCATGGATATGCGCGCCTTGGACAACCATTTGGATAGTGAGCATGCGGATATACCGGCCAAATGTCGCCACTGTGAGGTCGTATTCCGTACACATCGTCAACTAAGTATGCATCCATGCACGCAACGCTTGCTCGGTAAACGTCATATGCCACTGGTGGAATGCGTGAAATGTGGACTGAGTTTTGCTGATGGTAGCGCGCTGGAATTGCACGCACGCGAATGTCACAATACCGAAATGCAACAACCTACCAGCCGTCGCAGTCGTAGCCTAAGCGATAGTTTCACCACAAATGCGCCATCAACGCGACCTTCTGTGCTAACAGAAGCCGAAGTGGAAGAGAAACAGGCGCGCGAGGTGCGCAATCAATTTTTCCGTCAACTCTATATGCAAACTCAAAAACCCTATACCGCACAAAATATGAACTCAACACGTGCTGAGTTGAGCGCGAATGAGGATGAGGAGCGCTGCGACGAGACTGTCGTCAATATAAACACACACGATATTAAGCTGGAAGCAGATATCGAACAGACGACCGATCAAATGGCGCATAATTTACACACACAACATGACTCCAAAGATTTAGCTGATATACAATCCATACTGAATATGACCTCGTCATCGTCCACCtcgaattttctcaaaaactttGAACAATCCGTGAATACACCATCGAGTAATTACAGTTTTGATAAAGATGAGGAGGAGGCTCAAGATTGTTTCACTTCCGAATTTCGTAAAATGAAATTGCGTGGTGAATTTCCCTGCAAGTTGTGCACTGCCGTCTTTCCGAACTTGCGCGCGCTCAAAGGTCACAATCGTGTGCATTTGAGCGCTGTTGGTCCAGCTGGACCATTCCGTTGCAACATGTGCCCGTATACGATATGCGACAAGGCAGCGTTGGTGCGTCATATGCGCACACATAACGGTGATCGTCCGTACGAGTGTGCCGAGTGTAATTATGCATTTACCACGAAGGCCAATTGCGAACGACATTTGCGTAATCGGCATGCGAAGACGACACGCGACGAGGTGAAGCGTGCTATTATTTATCATCCATCTGAGGACTCCACATGCGATGATCCCGCAAAGAAATTACAAATGTTCTCCCCGCCCGACTTCGAAGACGACATGGACTTGCAATATCCCCAGCATCAGCCCAAAGATCGTTCAACACCAGTTTCACATCTCAAAGAAATGCTAACAGCTGAGAGTCCTACAACGAAACCAATGAAGATACAAGTGAAAAGTTTGGAACAATTGCTTGATAAGTCTAGCGGTTCGATTGGCAGTGCGAGCTACAGTGAGGCGTACGAggaaagtgttgttgttgcaccaACATGCACGCAACCAGCCGATGTGGCGCCTATCGATTTAAGTATGGATGTGCTGGATTTGAGCAAGAAGCCCACAGTGAAGCCTGCAGCAGCAGAAAAGGAGTTTGCGCCCGCCGCACCCACACCCGCAGCCATCCTACCAATTATCGATAACGCCAACGATGCTGAGAAAAAACTCGATATATTCTCGTATGTGAAGGAGAATCTCAACATGCCAAAAATGCTTGAGCTCTGGAGCTTATCAGCACAATTTCCATTTATGCCCGATTTTCGTCCGCTGATGAATCAAATGTTTGCCAATAGCGCCGCGGCGGCAGCTGCTGCAGCTGCTGGCAATCCATTTGGAGCGCCCTCCATCGATTTGAATAAAGCGGCGGCGGGCATGCCAACTCCACCAAATATGCCACCATCAATGTTGCCACATTTGAATTCATTGATGAACGATAAGTTGAATACGCCACCCGAAGCGAATGTCATGAGTCAAATGCTACCCAAAACCCTAATGACACCGCCCAATCAAAACTCAGCAATGCATATGCCAACACGTCACTCGCCGCACATGCCAACGCAAACTGTGCTGCCCGGTGGTCCTGTGAAGATGGTGATCAAAAATGGTGTACTCatgccaaaacaaaaacaacgtcGCTACCGCACCGAACGTCCATTCGCTTGTGAACATTGCTCGGCGCGTTTTACGCTGCGCTCGAACATGGAACGTCATGTTAAGCAGCAGCATCCCCAGTACTACGCACAACGTCATCGCAGCGGACATCATAGCATGCGTGGACGTGGTGCGGGTGGTGCCATAGCTATCAATAGTATGTCGCATCTACAAGCTGCTTTCGTTCAAGCGCACAGCCAAGTCAACAATCATCAAACGCCAGCCAATGGCTTGAGCGCTTCACCCATttcggagcaagtgaagtatGCGATATTGGCGCAACAGTTGAAGGCGCGCAAAGATACCGATCTATTGCAGCAAGCGCTAGCGCATGGTTCGAGCAGCATCGCAAATAATCATCATTTGCTCTTGAATGCTAGCGGCGCATTGGGTGCACTCGGTGCGCCAACAAATGGGCTGCAATTTCCATTTAATCAACTGAATCAACAGTCGCCAAATATTAACGGTGTGATGGAAGATGATGAACCCAAATTGGTTATTGATGAGGATGACGAAGATGACGATGTTGAAGAGATActcgatgatgatgatgaagaaAATGAAGAAGAAGATCAAGAAGAAATTGAATTGTTGGAGCACCCAAGCAGCGAACCCATTGAAAACACTTTGCACAGCGAGCAAACAGCGCCTATGCTGGAAACGCTTGAGAAGAAAGCGCCAACCACTGGTGCAGCAGTCAATGAGACAGCCAAAAAGGTGGCTGAAACTATACTCGAACAAGCAATTAAAACAGGACAAAGGCTCAATCAGACCAACGCAAAAACCAGCACCGCATTTCCAGCAAAACCTATGCCTGCGAAACCTATGACAGTAAAGGCCGCAATGCCACCAACTCCTGCAGCGCCTAGTGCGCCCGTCACGCCCGCCAACACAATGAAAGCGATGATCGCACAGGCGGAGTCAGTGGGCAAGTTCCTTAAAGAGGTCGCCAAATCGCCATTCAAGGATGAGTCGCAAGACTTGGTACCCGTAGCCAAGCTAGTCGATAATGCGACTAGTAACTCTGTCTCCTTCAACAACTATTTCCGCCCGAGCGATGTAGCCAATCACATGGAACAAAGCGACGAGGAGGGTTTGGTTGCCTCGGGTAGCGCTAGCGAAAGCAATAACTCGGGCACTGAAGATGTGGCAGCACCAGTTGAACCTAAAAAGAAATCCGCCTACAGCTTAGCACCGAATCGCGTGTCGTGCCCCTACTGTCAACGCATGTTCCCGTGGTCGAGCTCACTGCGCCGCCATATACTCACACATACCGGTCAAAAGCCATTCAAATGCTCGCACTGTCCGCTACTCTTCACCACCAAGAGCAATTGTGATCGTCATTTATTGCGTAAGCATGGTGATGTGGAATCAGCCGTCTCGGTTTATGTGCCAACTGAGGATGTTAACGAACCAATACCGGTGCCAAAATCAGTTGAAGAGATCGAACAGCAGCAACGCCAACGTGAAGAAGAGTTGCGTAAACGTAAAGCTGAAGAGGCGCAAGTGGAACGTGAGCGCCGCGATAAGGAACAACGTCTacaacaagaacaagaacaacaaagtaAACTCTTTCAACATCTGCAACAACAACTCAGTGCTACAATGAACAACAACACTGCACTACCGAATGCAGTTAACAGTGCAGCAGAAGCCGCGGATGCGCGCGCCAAAGAGCATCTCTCCCAGCAACAACTCAACGCCGATTTGCCATACAAGTGTCATTTGTGCGAGAGCTCGTTTGCCGAACGTTTCAATTGTTTGGAGCACATCAAAATGCAGCACATTGCCGAGTTCACGCTACTCCTAGCCAAAGGTGCCATCGTCAGCGATGCTGAAGCCAATCAAACACAACTACTCGAAGAAGAAGAGAGACGTGTGGGCGAAGAGGCTAACAATTATGCGCTCTTGCCTAAACTTCCAGCTTATACAAATCGTAAAGTGATTTGCGCTTTTTGTGTGCGTCGTTTCTGGTCTACCGAAGATTTACGTCGTCACATGCGCACCCACTCGGGTGAGCGCCCATTTCAATGTGAAATATGTTTGCGTAAATTTACGTTGAAGCACAGCATGTTGCGCCATATGAAGAAGCACACAACGAATCGTGGTCAGAATGGCTCAGCTGGTAGTGATGCGTGCACGACGGGCAATAGTGGTTCCGATTTCTCCGATGATGAACAAATGCCAACACCCACAACCACAACGACAAACGTCAGCGCCATATctacatcagcaacaacaacaacgtcaacaGCACATGCCACACTCTCCGCTTTGCGTACACCCCGCATTCAAGAGCTCTTGAGCAAAGCAAACGAATGGCGTAGCAGTCATTTACTAGTTGGCGAACATAAAGAGAATATTGCCGAAGAACAACCGAATGGTTTGCATAGTGATCTGATTGGAAATCTTTTGGGTATTAGCGATCAAGGTATACTCAATAAGTTGCTATCCTCAGCTGATGAGGCGGCAAAACTTTTGGGTGTGGAGAAGTAA
Protein Sequence
MKFVCTICEVVSATRHEFTNHIRCHNYASGDTENYTCAICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHNHHHRRNSNGTKHNNNSHSNNNNSTMSGNVTNATLSNGSTNYAPATTTNNNATYKQLSHELLGEGVKSSTAATAAAASSEAMEAIKMTDVTIGGGLLGSVTTGGAANAGVNGKRLHSSGVESCESDGGCSTDSSSSAISHSSNNHNHNNNNNNNNNYNNDNINNNINNNTSEKRNIFGNFRRKSNEQHDEMDMDAEYDAGSITTTLKRRMKTTINNNVIAADVDELDEQRKSLATASEDDEAHEQKPSFACPICPVCNAGDFMDMRALDNHLDSEHADIPAKCRHCEVVFRTHRQLSMHPCTQRLLGKRHMPLVECVKCGLSFADGSALELHARECHNTEMQQPTSRRSRSLSDSFTTNAPSTRPSVLTEAEVEEKQAREVRNQFFRQLYMQTQKPYTAQNMNSTRAELSANEDEERCDETVVNINTHDIKLEADIEQTTDQMAHNLHTQHDSKDLADIQSILNMTSSSSTSNFLKNFEQSVNTPSSNYSFDKDEEEAQDCFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRVHLSAVGPAGPFRCNMCPYTICDKAALVRHMRTHNGDRPYECAECNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSTCDDPAKKLQMFSPPDFEDDMDLQYPQHQPKDRSTPVSHLKEMLTAESPTTKPMKIQVKSLEQLLDKSSGSIGSASYSEAYEESVVVAPTCTQPADVAPIDLSMDVLDLSKKPTVKPAAAEKEFAPAAPTPAAILPIIDNANDAEKKLDIFSYVKENLNMPKMLELWSLSAQFPFMPDFRPLMNQMFANSAAAAAAAAAGNPFGAPSIDLNKAAAGMPTPPNMPPSMLPHLNSLMNDKLNTPPEANVMSQMLPKTLMTPPNQNSAMHMPTRHSPHMPTQTVLPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQYYAQRHRSGHHSMRGRGAGGAIAINSMSHLQAAFVQAHSQVNNHQTPANGLSASPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSIANNHHLLLNASGALGALGAPTNGLQFPFNQLNQQSPNINGVMEDDEPKLVIDEDDEDDDVEEILDDDDEENEEEDQEEIELLEHPSSEPIENTLHSEQTAPMLETLEKKAPTTGAAVNETAKKVAETILEQAIKTGQRLNQTNAKTSTAFPAKPMPAKPMTVKAAMPPTPAAPSAPVTPANTMKAMIAQAESVGKFLKEVAKSPFKDESQDLVPVAKLVDNATSNSVSFNNYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVAAPVEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDVESAVSVYVPTEDVNEPIPVPKSVEEIEQQQRQREEELRKRKAEEAQVERERRDKEQRLQQEQEQQSKLFQHLQQQLSATMNNNTALPNAVNSAAEAADARAKEHLSQQQLNADLPYKCHLCESSFAERFNCLEHIKMQHIAEFTLLLAKGAIVSDAEANQTQLLEEEERRVGEEANNYALLPKLPAYTNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHTTNRGQNGSAGSDACTTGNSGSDFSDDEQMPTPTTTTTNVSAISTSATTTTSTAHATLSALRTPRIQELLSKANEWRSSHLLVGEHKENIAEEQPNGLHSDLIGNLLGISDQGILNKLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00992958;
90% Identity
-
80% Identity
-