Smar047805.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- Dp
- Assembly
- GCA_951509765.1
- Location
- OX608083.1:60840019-60846818[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-23 2.6e-19 70.2 0.1 2 65 164 241 163 241 0.97
Sequence Information
- Coding Sequence
- ATGGCGCATTCAACAGCAGCTATTGTCACAGCAACAACGTCGGCTGCTGCTGCCGCATCGGCGACAAGTGAAATCAACTGTATAATCCAGGATGTAAATGGTAAACTCGTAAAAATTCTGAGGCCAAAGGATATCAAACAAGAAGCTGCGCATGTGATTAGCGCAAATGGTGGTACGCTGAATTCAAGTGCGGGCTCTTATACGCAGTTGGCCACTTCGAGTCAACCACAATATTTGAGCCGTTACAACCTACAAGGTGGCGACAGCACCAACACATATACCGTCATATCCACCCAGAACAGTGTTGGAAATCAGCAGCCAACCTTTACAACGATAAAATACGAAATACCCGAAACGGTCACTGTTAAAACAGAGGAACGTTACACAAAATACACACCGAATAACAATACAAAAATGAAAACCAAACTGCACACCACCAACAGCCCACATTCAAACTCGACCCGAAGGCAACGTAAACCCGAAAAGGCTGGCAAAGGTTTACGACATTTTGCGCTTAAGGTTTgtgaaaaagttaaagaaaaaggCGTCACCACCTACAATGAAGTGGCCGATGAATTGGTCGCCGAAGAACTGCATATGAATTCAATTGATTCAGCTAACTGTGATCAAAAGAATATACGTCGGCGTGTATATGATGCCCTTAACGTACTTATGGCCATGGAAATAATATCAAaagacaaaaaagaaatacgtTGGATTGGTTTGCCATCAAATTCGGCCGAGCAATGCTCTGAACTGGAAAGACAAAATGAAGAGTGTCGTCAACGTATACAACAGAAACATCAACAATTAAATGAGCTATTGCTGCATCAAGTTGCCTTCAAGAGTCTGATCGAACGCAATAAAGAAGCGGAACGGCAAGGCAATGTACCAACACCCAATTCATCCATACAGCTACCCTTCATCATAGTTAACACGCACAAATCAACAAAAATCAATTGTAGCGTTACGAATGATAAATCcgaatacatatttaaatttgatgATCAATTCGAAATGCACGATGATGCCGAAGTTTTGAAACGCATGGGGTTACTTGGTGGTTTAGATAAAGGTCAGTGCTCACAAGAGGACATCGAACGGGCAAAAACTCTGGTGCCACCGAATTTCGAAAAGTATATAGAAGCTTATGGTAATGGCAAGAGTTTAACATGCGATTCTGATGATGACACCATGACAGGCTACGCTGATCTTACCAACAGTCATGCTCATGGTAGTGGTAGTGGTGGCGGATCAAAACGGACTACTGGTATACGAAATGACGATGACGATGATGaagattttttagaaaatagcGACATTGATTGA
- Protein Sequence
- MAHSTAAIVTATTSAAAAASATSEINCIIQDVNGKLVKILRPKDIKQEAAHVISANGGTLNSSAGSYTQLATSSQPQYLSRYNLQGGDSTNTYTVISTQNSVGNQQPTFTTIKYEIPETVTVKTEERYTKYTPNNNTKMKTKLHTTNSPHSNSTRRQRKPEKAGKGLRHFALKVCEKVKEKGVTTYNEVADELVAEELHMNSIDSANCDQKNIRRRVYDALNVLMAMEIISKDKKEIRWIGLPSNSAEQCSELERQNEECRQRIQQKHQQLNELLLHQVAFKSLIERNKEAERQGNVPTPNSSIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDDQFEMHDDAEVLKRMGLLGGLDKGQCSQEDIERAKTLVPPNFEKYIEAYGNGKSLTCDSDDDTMTGYADLTNSHAHGSGSGGGSKRTTGIRNDDDDDEDFLENSDID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992350; iTF_00303601; iTF_01045264; iTF_00191159; iTF_00191876; iTF_00190477; iTF_00193341; iTF_01189175; iTF_00080987; iTF_00082723; iTF_00090959; iTF_00192604; iTF_01563486; iTF_01562560;
- 90% Identity
- iTF_00992350;
- 80% Identity
- -