Stae009852.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000054.1:1242909-1258554[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 1.9e-06 0.00022 22.7 1.8 2 23 176 197 175 197 0.97 2 29 0.017 1.9 10.3 2.0 1 23 216 239 216 239 0.97 3 29 0.00033 0.038 15.6 1.8 1 23 271 293 271 293 0.98 4 29 4.1e-06 0.00048 21.6 1.7 1 23 300 322 300 322 0.98 5 29 0.033 3.9 9.3 1.8 1 23 442 465 442 465 0.92 6 29 4.9 5.7e+02 2.5 5.6 1 23 472 494 472 494 0.96 7 29 5.1 5.9e+02 2.4 0.7 2 21 503 522 502 523 0.90 8 29 0.073 8.5 8.2 0.1 3 22 539 558 538 558 0.90 9 29 1.1e-05 0.0013 20.3 1.2 2 23 571 592 570 592 0.97 10 29 0.00031 0.035 15.7 1.8 1 23 599 621 599 621 0.96 11 29 0.48 56 5.7 0.4 2 23 635 656 634 656 0.93 12 29 0.036 4.1 9.2 0.5 1 23 734 757 734 757 0.94 13 29 0.0013 0.15 13.7 1.1 1 21 766 786 766 787 0.94 14 29 0.0063 0.73 11.6 2.7 2 23 828 849 827 849 0.98 15 29 1.6e-05 0.0019 19.7 0.7 1 23 856 878 856 878 0.98 16 29 0.011 1.2 10.9 2.4 1 23 1029 1052 1029 1052 0.98 17 29 0.0079 0.92 11.3 1.5 1 23 1089 1112 1089 1112 0.96 18 29 0.036 4.2 9.2 1.9 3 23 1124 1144 1123 1144 0.96 19 29 5.5e-06 0.00064 21.2 1.0 1 23 1151 1173 1151 1173 0.98 20 29 0.0053 0.61 11.8 0.2 2 23 1197 1219 1197 1219 0.96 21 29 0.0019 0.22 13.2 0.9 1 23 1260 1283 1260 1283 0.97 22 29 0.15 18 7.3 0.7 1 23 1320 1343 1320 1343 0.91 23 29 0.0006 0.069 14.8 1.9 1 20 1349 1368 1349 1369 0.95 24 29 0.00017 0.02 16.5 1.9 1 23 1379 1401 1379 1401 0.98 25 29 2.6e-05 0.003 19.1 0.3 2 23 1423 1444 1422 1444 0.95 26 29 0.0004 0.046 15.4 3.3 1 23 1450 1472 1450 1472 0.99 27 29 1.1e-06 0.00013 23.4 3.4 1 23 1478 1500 1478 1500 0.98 28 29 9.7e-07 0.00011 23.6 2.4 1 23 1506 1528 1506 1528 0.99 29 29 0.0004 0.047 15.4 0.2 1 23 1534 1558 1534 1558 0.93
Sequence Information
- Coding Sequence
- ATGGAAGAAATCGATTCTATAAAACCTTTGGATAGTATAAATCTTGAGGAAATTTGTCGGGCCTGCTTTGAAACTTGTGTAGAATATAAAAATTTGTTCGATGATACCGAGCGCATCGATAAACGTACATTGGGCGATGTCTTCTTTGACGTTGTAAAAATTGAAATGAAGACAAATGCTGAAACACCACCCTGCCGCATTTGTTTGATATGTTCAAACGAGCTTCTAAATGCGTACAACTTCATACAGAAATCGCAAAAAAACAATGGCCGTTTATTACAGTACTTAATAAATGCCAATATCAAAGGAGTCGACTGTCTTACAGAATATCCTATGGACATACCAAATGACCATAGTGTAACAGATTTTTTACAAATTAAAGTCGAAAATGAAATCCTCAATGATGACTACGACTACAATGATTCAATGCCAGATAACGATAGACAGTCATCGGATATGAATTATGATTCAGATGACAGTGACGATGAACCACTTCTAAGCAAGAAACACAAAACCAGGAAATTGGAATGCTCGTATTGCGATCGTGTATTCAAGCGACAAGACTTCTTTGAGAATCATATGAGAAAACACAAGGAAGAGGATGTTCAGAAAAAAGAAGTAGAGGATTCGGATTATGAGCCCAAATTTGAATGTGAAGATTGTGATTTTATTTGCACTTCAAAACTGGAAATGAAGAAGCATGAGAAATCAGAGCACAGAAGCAGCAAAAAATCGCTGAAAACTCGCAGTCAACGCACCACCATGAGCACCCGGAGCAAAACCAAAAGAACCCGATCAAAGTCTGGGCGTTTTGAGTGCGACTATTGCAATAAAACATTCGCCTGGAAAAAGGATCTCTTTCGTCATGAAAAATCCCATGAACCGAATACCAGAAAGTATAGTTGTCCACATTGCGATCGTCGATTCATACGCAAAGACAAGCTCCAATCCCACGTTCTTGTTCATTTAGGTGGCATTGTTAAACCTCGATCTTCAAAAACAGTTCAAGCGTTTTCTCGGCAATTGTATGCACCAGAGAAATTCAAAGAAATTATCTGCATGATTTGTAATTATGACAAAGCAACTAGTATCAAAGAGCTATGTAATCATATTGATCAGCACGACATGCAACAACAATCCGATGAATTGGAAAGCAGTGAACTTGTGAAAAGATTTTATGAAGGTAAAGATTTGCAAGAAGTCAGAACACTCATAGGCAATCTAATTCAACAGAAAGACTACACTACATTGTTGTCCATTGTCAATGCAAATGGTCTGGAGATGGGAATCAGCGATTCAGATGAGAGCGATGCAGAAACTTTATACACATGTGAAGTTTGCAAGGACATGTTCAATCGAAAGCACAAACTAATAGCTCATTCCTATTCTGGGCATACAGTCGATGAATGTCTGTATAAATGTGAAAAATGCAAAATAGAATTTACTTGTAAGACTGTATTTGATAAACACCAGAAGAATCATTGTAATAATGCCGACAAAGAGCTCTGCTGCGAGAACTGTCCAGCTCGGTTTGTCTGGCCACAGAATCTTGCAAATCACAAATGTATCAAAGACATCGATTCGTTGAATAAATCGAATAAAGACAAAACATTGTGTGAGCCGTGTGGCGAAATGTTTCCTACTCAAAAGGCTTTGCGCCTTCATAAAAAAACAAAATGTGGCACTCTCGAGCTGGATAAGGAAGGTACGACATGTGAAATTTGCAATAAAGTCTTCAGCTTCCCGAGAGATTTGAGAAAACATAAGAAAATACACATTCCCGATGGGAAGTCTCACGATTGTTCGGTTTGTGGTGAGAAATTCTTACGATCAGATAATCTTCGAAATCACCTCAAGTCGCATACGAGCAAAGTTGAAAGACCACTTGTTGCAAAGAAGCTTATGTGCATGCTGTGTGGTGATAAATTTACAAGCATTGGCAGCTTGAGATATCATTTGTTTAATCATTCCGATGGCCAGACTGAAATTGATTTTGAAAATTCCGGCTTCGTGTTGAATTTCTATCCAGGTGTTGGACGCGAAGTTATTTCCGATTACGTTAAAAGTTGTTTCAATGAACAGAAACTTGCCCAACTCTATCTGGCTGTAAATAAAATCGGTCTTGAGATGACTTTGAGCGATTCGGACAGCGATGACGACGAACAAGCTAACAAGTTTCAGGCAACTCCATCGAAGGTTCACGTCTGTGAAGTGTGTAATGTAAAGTTTCCCCGCCAACAGGCGATACTCCAGCATCAATATTCTGAACACGATCCTCATGAAAGCAGTTTCCCCCATAAATGTTCAAAGTGTGATGAACAATTTGTGTCGAATGCTCTCTTGGAGCGTCATTTCAAGAACGAATGCCAAAATGATGTCAGAAGTAATCCTTGTATTAAGTGCGGCATCAAATTTATTTGGAAAGAAAATTTGGTTGCTCATACGTGTTTCAGGGAAGAGAAGAGTCTTGAAGACAATAAACAATGTGAGGTTTGTGGCAAGAAGTTCATTTGGCTAAAGGACTTACACCGACACAAGCGAAGTCACATTCCCTATGAAAAGAAATTCGAATGCCTAATATGTGCAAGAAAATTCAATCGCAAAGACAATATGAGAGCTCACATGAAAGTTCACACTAGTGACAGCCAAGTTAATAGAGATAAGGGGAAATCAGCGATTAAATGGGAACAGCAAGATGAAAATCTCTGCAAGCCAAATGGCCAAAAAGTTATTCAATGTAAGATCTGTTTGTCCAAACATAATACAATCAAAGACTTAACAACACATTTGATGGGTCACAAGGATCCTACAACATTCAAACAAAGACAAGGCGAGGCTAGAGAGATTTCAATGATGATTTATGGTAAGCAAATGGAAATGCAAACTCTTGAACGTGCAATTTGTAGGGATCTCCAGAAAGGCAGTAATACTCGCTTCTATTCTATAACCAATGAAGTCGGCTATGAATTGAGTTTGAATGATTCGGAAACGTGTTCTGATTTTGATGCGGACGATGATGACGACGACGATGATGATTTGGACGATGATGGCGTGTTGAGAGATCGGAAAGTTGTAATGAAAGGATACAACTGCGAATTATGCAGTCAAAATTTCAATAGGAAATTCAAAATATTTGAACATCAGCGAACCGAGCATAAATGGGAAGAATTGCCCTACGAATGCAATCGTTGCGGGTCGAAATACGTGTGTGAGAGAATTTATCAATTGCATTTGCAAAATGATTGCGAGAATAATGAGAAACAATTCAAGTGTAAAACTTGCCCGATGAAATTTGCGTGGAAGGAGAATCTTAAAAATCACGAAAAATACATGCACGACCAGAATCCAGCAATGCCAAAGAAAAACCATTGCGATATTTGTGGAAAGAGTTTCCTTTGGGTAAAGGATTTAACACGTCACCAGAAGACCCACCAAACCGAAGACGAGAAATTCGAATGCACTTGGTGCTTTAGAGTTTTTATGCGAAGGGATAATCTTAAGGTTCACATGAAAGTCCACCAGAATGCTACACACATCCTATTGCCTGACATTTATTATCTTGCTCGACCCAATGGCGCAAAAGTTGCCCAATGTAAACTGTGTGACCAGCAATACACAAACATCGCCGATTTGGCCAATCACATTCAAAATAGCCACATTAAATTACAGATGCTCAGTATCACACCCAACCCAGCCAGTTATTCAATAACAAATGCGTTAGGCTACGAGATGGATATTAACGATTCCGAAACTGAGCGCGAAGGCGAAGATGAGAAGTATGTTTGTGAACTATGCGATGCTCGTTATAATCGTCGATTTAAGTTACTCCAACATCAGCAATCGCTTCATTACTCCGATAACATTCCTCACAAATGCATCGATTGCAGTTTTAAATGCGTTTCCGAGCTTGTGCTCAACTATCATATGCGGACGCAATGCATGAATCTTGTAAAGCAATTCCGTTGCAGCAAGTGTACTATGCGTTTCATGTGGAAAGAGAATCTAGAGAATCATGAGAGTCTAATACACGATGGCAAGCGAAAACATACGTGCAATGTTTGCAAGAAAGATTTTGCAACACAACATGATCTGAGAAACCATACCGAATGCAAGGCTCCAGCAGAAGAGAAACTATTTAAATGTGACTTGTGCGATCGTAAATACAATCGAAAGGATCGACTTATGAAACACGCAAAGGTTCATACTGCCGGTGGCAAAGAAACTAAAGCTAAACGCATTAAAGCCGAAGCGTCGGACAAGAAAttcttgtgtgcgttctgtggcaaggaagtgtcgagttcatcaaaccttgtcattcatatgagacgacatacgggcgagaaaccgttcaagtgcgaattttgtaataagggcttcccgaggtcttcggatttggcttgccatcgacgaacgcacactggtgaaagaccacacaaatgtacagtatgcgaaaaggcattctcacggtcgtacaagctgcaaactcacatgcgaattcattcgggtgaaagaccgtacaagtgcacttactgtgaaaaaagcttcacccaatcgaatgatttgacattgcatgttcgtcgacatacaggtgaaaggccttatgtgtgtgaaacatgtggcgagagatTTATACAGGGAACAGCACTTAAAAATCATCGAAGAATGCGTGGTCATTATGAAATTTAA
- Protein Sequence
- MEEIDSIKPLDSINLEEICRACFETCVEYKNLFDDTERIDKRTLGDVFFDVVKIEMKTNAETPPCRICLICSNELLNAYNFIQKSQKNNGRLLQYLINANIKGVDCLTEYPMDIPNDHSVTDFLQIKVENEILNDDYDYNDSMPDNDRQSSDMNYDSDDSDDEPLLSKKHKTRKLECSYCDRVFKRQDFFENHMRKHKEEDVQKKEVEDSDYEPKFECEDCDFICTSKLEMKKHEKSEHRSSKKSLKTRSQRTTMSTRSKTKRTRSKSGRFECDYCNKTFAWKKDLFRHEKSHEPNTRKYSCPHCDRRFIRKDKLQSHVLVHLGGIVKPRSSKTVQAFSRQLYAPEKFKEIICMICNYDKATSIKELCNHIDQHDMQQQSDELESSELVKRFYEGKDLQEVRTLIGNLIQQKDYTTLLSIVNANGLEMGISDSDESDAETLYTCEVCKDMFNRKHKLIAHSYSGHTVDECLYKCEKCKIEFTCKTVFDKHQKNHCNNADKELCCENCPARFVWPQNLANHKCIKDIDSLNKSNKDKTLCEPCGEMFPTQKALRLHKKTKCGTLELDKEGTTCEICNKVFSFPRDLRKHKKIHIPDGKSHDCSVCGEKFLRSDNLRNHLKSHTSKVERPLVAKKLMCMLCGDKFTSIGSLRYHLFNHSDGQTEIDFENSGFVLNFYPGVGREVISDYVKSCFNEQKLAQLYLAVNKIGLEMTLSDSDSDDDEQANKFQATPSKVHVCEVCNVKFPRQQAILQHQYSEHDPHESSFPHKCSKCDEQFVSNALLERHFKNECQNDVRSNPCIKCGIKFIWKENLVAHTCFREEKSLEDNKQCEVCGKKFIWLKDLHRHKRSHIPYEKKFECLICARKFNRKDNMRAHMKVHTSDSQVNRDKGKSAIKWEQQDENLCKPNGQKVIQCKICLSKHNTIKDLTTHLMGHKDPTTFKQRQGEAREISMMIYGKQMEMQTLERAICRDLQKGSNTRFYSITNEVGYELSLNDSETCSDFDADDDDDDDDDLDDDGVLRDRKVVMKGYNCELCSQNFNRKFKIFEHQRTEHKWEELPYECNRCGSKYVCERIYQLHLQNDCENNEKQFKCKTCPMKFAWKENLKNHEKYMHDQNPAMPKKNHCDICGKSFLWVKDLTRHQKTHQTEDEKFECTWCFRVFMRRDNLKVHMKVHQNATHILLPDIYYLARPNGAKVAQCKLCDQQYTNIADLANHIQNSHIKLQMLSITPNPASYSITNALGYEMDINDSETEREGEDEKYVCELCDARYNRRFKLLQHQQSLHYSDNIPHKCIDCSFKCVSELVLNYHMRTQCMNLVKQFRCSKCTMRFMWKENLENHESLIHDGKRKHTCNVCKKDFATQHDLRNHTECKAPAEEKLFKCDLCDRKYNRKDRLMKHAKVHTAGGKETKAKRIKAEASDKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLACHRRTHTGERPHKCTVCEKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYVCETCGERFIQGTALKNHRRMRGHYEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984436;
- 90% Identity
- -
- 80% Identity
- -