Stae000422.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- RHOBTB1
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000003.1:386601-388323[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 3.5e-05 25.1 0.1 7 45 260 299 254 323 0.79 2 2 0.0014 0.27 12.6 0.0 53 89 395 430 370 437 0.80
Sequence Information
- Coding Sequence
- ATGGATAACGAACAGCCGCATCAAGAATTGGTAAAGTGTGTACTCGTTGGAGATACTGCTGTTGGCAAGACCCGTTTGATTTGTGCTAGAGCTTGTAACAAACATGTATCGCTGTCACAGTTGCTGTCGACTCATGTGCCAACTGTTTGGGCTATTGATCAATATAGGATATACAAAGACGTCCTTGAAAGATCATGGGAAGTTGTTGACGGAGTGAACGTATCACTCAGACTTTGGGACACATTTGGTGATCATGACAAGGATCGAAGATTTGCTTATGGAAGATCCGATGTAGTGTTGTTGTGCTTCTCAATCGCCAGTCCAACATCGTTGAGGAATTGCAAAGCGATGTGGTATCCAGAAATACGTCGTTTCTGTCCGGATACTCCTGTTATTCTAGTAGGCTGTAAAAACGATTTGCGATACATGTACCGAGATGAGAAGTATCTCTCGTACTTTGGCGAACGAAGTCCCTTCGTGAGAGCTGCATTGAAAAGTGATTTAGTGATGCCAGATGAAGCGAGAGCTGTGGCCAAGGAGCTCGGAGTTGCTTATTATGAGACCAGTGTGTTCACATACTTCGGAGTGAATGAATTATTCGAAAATGCCATACGTTCAGCTTTGATTGCGAGGCGACAGCAACGATTCTGGATGACAAACCTCAAGAAGGTCCAAAAACCTCTGTTACAGGCACCATTTCGTCCTCCAAAACCTCCACCACCAGAGGTTACCGTTGTTGTGGGCAACTACCGAAAGGATATGTACAGCATGCTGGTGTCCCAATGCTACACCGATCTGATACTCATTGTTAGCTCAACGAAATTTGCAGTCCACAAATTCATGCTTGCCGCAGCTTCGAATGTCTTCTTCCGATTGCTAACCACAGAGCTCTCTGATATGGGCGGGCGGAGTAGTAGTGAATCCAGTATGATAAGTTCAACATTCGGCGAAGCAACAACGGCTGATTTCAACGACGACACCGAGTGTCTAATACGCAACGAGTCCCGGACTTTGAGAATGTGGGAACATTTGAAACGTCGATCCAGCTATCAAGCTCTACCACTAATCGAATCAAAGAAATCAACAGATCTCTACAAGGACCTGCATCATCCGATATTTCAAAATATCCGCATAGTTCAGATGGAGAACAATCGTGGCGTGAATGTAACACAGACAATTGTCACAATGACAAAGATCATCACGCCGCAAGCAATGAATCAGTGTCTTAAATTTATCTACACTGGAACAATAGAAAAGGAATTTCACAATCTTCAGGTAATTTTGTTTACACCTTCGGTTGTTTGTTTCAAATATTTTGGAGTGTTTTCTGCTTACATATGA
- Protein Sequence
- MDNEQPHQELVKCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVVDGVNVSLRLWDTFGDHDKDRRFAYGRSDVVLLCFSIASPTSLRNCKAMWYPEIRRFCPDTPVILVGCKNDLRYMYRDEKYLSYFGERSPFVRAALKSDLVMPDEARAVAKELGVAYYETSVFTYFGVNELFENAIRSALIARRQQRFWMTNLKKVQKPLLQAPFRPPKPPPPEVTVVVGNYRKDMYSMLVSQCYTDLILIVSSTKFAVHKFMLAAASNVFFRLLTTELSDMGGRSSSESSMISSTFGEATTADFNDDTECLIRNESRTLRMWEHLKRRSSYQALPLIESKKSTDLYKDLHHPIFQNIRIVQMENNRGVNVTQTIVTMTKIITPQAMNQCLKFIYTGTIEKEFHNLQVILFTPSVVCFKYFGVFSAYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00359563; iTF_00082209; iTF_01314796; iTF_00190071; iTF_00975745; iTF_00653650;
- 90% Identity
- iTF_00190071;
- 80% Identity
- -