Stae027154.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000214.1:1277558-1279006[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-13 7.9e-11 42.7 0.0 3 43 295 335 293 337 0.90 2 3 0.081 58 4.7 0.0 27 37 366 376 360 381 0.87 3 3 1.8e-15 1.3e-12 48.4 0.0 4 40 405 441 403 445 0.92
Sequence Information
- Coding Sequence
- ATGAATCATCTGAAATGGATGGGCCATACGGCCACTATTCTAGATATTCAAAAAGCCCTAAAAAATGATCCAACTACCTGTGATGTTACCATTACTAGCCGCGGTAAATCTGTCAAGGCTCATCGCTTTGTTCTATGCTCCTGCAGCGATTTATTGCGTGACATTTTGAACGATCTACCAATTGGTCAGGAAGCAACTATCATTGTTCCAGATATCAAAGGTACTCTACTCGAAAGTGTATTGAGTTTTGTTTATATGGGCGAGACGAGTCTGTCATCTGCAAATCTATCGGATTTTCTTGAGGCAATCAACGCACTTGGCATTAAGAGTGCCATTAGTTTCGAATGTGCAACTAGCTATACAGCTGCTAATATCAAAAATGTTCCGGAAATTCCCGAGATAGAAGAGGAACTAACGGAAGCCGAACCAGAGCAGGAAATTGTAGAGGATAAAGATGAAGAAGAGGAACAACAAACATGTGCAGGCGATACAAACGTGCGTGAACTTGAATTTCTCGAAGTATACAATGAGCAAGACAAAATAAGTTACACCATCGAAAATATAACACCCAACAATCCAAATGAGTATATTCTCACAGAAAGCTCTGGAACATTTACACTTACTCCCAACATGAAAATCGATGCTTCCGAAGTGGGTGCGTTGGTTGAAAAGAACGAAGACGATGGTCATTTGATGGAACAGTATGTGAACGATCCAATTGGCGACAGCAGTCAGGGTTCCAGCTCCGATCATAAGGATACTAAGCGAATTAAAAAGCTCAAAGATGAATTCAGCGAATTTCAAGGGCTAAGTCCAGAAGACCGCAAAGAAATATCAAGAGCAAGCCTACAAAATTTCAATGAAACACAATCGGCGCGATCGGAAGCACTTGAAAGTGCCGTTTTGGCTGTTGTAGATGAAGGTATGAGTTTGCAAAAAGCCGCCATCAAATTCAACATATCGAAAACTGTATTATGGAGACGGGTTAAAAAACATCCGCTATATATGAAGACAACTCGTGAGAATCCACTTATAACGGCGGCTTGTGAACGTCTTAAAACTGGCGATTCTCTTAAAAGCATAAGTCAAGCACTCAATATACCCATGTCCACATTACATCGACATAAAGTTCGTCTGGCCCAAGAAGGCAGGCTGCCTGACTATGTGACATTCAAAAAGCGAGGTCCATTATCTAAAGAAGTTTTGAAAGCGAAACTCAATAAGGCCGTTACTGCTTGCCTGGGAAATGGTATGTCCCAAAACCATGCTGCAAATGTGTTTGACGTTCCCAAGAGTACACTTTGGAGGCATTTGCAAAAGAAAATCTGTCGCCAGGATGATGATACCAAAAGCGGTTTATGTATTAAAGAGGAAATTGTAACAAATTGA
- Protein Sequence
- MNHLKWMGHTATILDIQKALKNDPTTCDVTITSRGKSVKAHRFVLCSCSDLLRDILNDLPIGQEATIIVPDIKGTLLESVLSFVYMGETSLSSANLSDFLEAINALGIKSAISFECATSYTAANIKNVPEIPEIEEELTEAEPEQEIVEDKDEEEEQQTCAGDTNVRELEFLEVYNEQDKISYTIENITPNNPNEYILTESSGTFTLTPNMKIDASEVGALVEKNEDDGHLMEQYVNDPIGDSSQGSSSDHKDTKRIKKLKDEFSEFQGLSPEDRKEISRASLQNFNETQSARSEALESAVLAVVDEGMSLQKAAIKFNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKTGDSLKSISQALNIPMSTLHRHKVRLAQEGRLPDYVTFKKRGPLSKEVLKAKLNKAVTACLGNGMSQNHAANVFDVPKSTLWRHLQKKICRQDDDTKSGLCIKEEIVTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00665554;
- 80% Identity
- iTF_01357185;