Basic Information

Insect: Sphaerogastrella javana
Gene Symbol: -
Assembly: GCA_037040025.1
Location: JBANCZ010005790.1:1362-4525[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 9.6e-06 0.0041 20.0 4.3 1 23 207 230 207 230 0.97

2 17 0.0016 0.7 13.0 1.9 1 23 237 259 237 259 0.98

3 17 0.55 2.4e+02 5.1 2.8 2 23 291 312 290 312 0.95

4 17 0.022 9.6 9.4 4.1 1 23 402 425 402 425 0.97

5 17 0.6 2.6e+02 4.9 0.5 1 19 432 450 432 453 0.86

6 17 0.14 62 6.9 5.4 1 23 462 484 462 484 0.95

7 17 3.9e-06 0.0017 21.2 0.9 1 23 491 514 491 514 0.97

8 17 9.1e-05 0.039 16.9 1.2 2 23 522 543 521 543 0.96

9 17 0.0041 1.7 11.8 0.1 2 21 570 589 569 590 0.94

10 17 0.0042 1.8 11.7 2.0 1 23 646 669 646 669 0.96

11 17 0.023 9.7 9.4 0.3 1 23 706 729 706 729 0.93

12 17 0.00014 0.06 16.4 1.6 2 23 771 793 770 793 0.95

13 17 0.00087 0.37 13.9 0.3 1 23 807 829 807 829 0.95

14 17 0.00011 0.048 16.7 1.2 1 23 835 857 835 857 0.99

15 17 3.6e-07 0.00015 24.5 2.6 1 23 863 885 863 885 0.98

16 17 1.2e-05 0.005 19.8 3.8 1 23 891 913 891 913 0.97

17 17 0.0022 0.94 12.6 0.2 1 23 919 943 919 943 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	9.6e-06	0.0041	20.0	4.3	1	23	207	230	207	230	0.97
2	17	0.0016	0.7	13.0	1.9	1	23	237	259	237	259	0.98
3	17	0.55	2.4e+02	5.1	2.8	2	23	291	312	290	312	0.95
4	17	0.022	9.6	9.4	4.1	1	23	402	425	402	425	0.97
5	17	0.6	2.6e+02	4.9	0.5	1	19	432	450	432	453	0.86
6	17	0.14	62	6.9	5.4	1	23	462	484	462	484	0.95
7	17	3.9e-06	0.0017	21.2	0.9	1	23	491	514	491	514	0.97
8	17	9.1e-05	0.039	16.9	1.2	2	23	522	543	521	543	0.96
9	17	0.0041	1.7	11.8	0.1	2	21	570	589	569	590	0.94
10	17	0.0042	1.8	11.7	2.0	1	23	646	669	646	669	0.96
11	17	0.023	9.7	9.4	0.3	1	23	706	729	706	729	0.93
12	17	0.00014	0.06	16.4	1.6	2	23	771	793	770	793	0.95
13	17	0.00087	0.37	13.9	0.3	1	23	807	829	807	829	0.95
14	17	0.00011	0.048	16.7	1.2	1	23	835	857	835	857	0.99
15	17	3.6e-07	0.00015	24.5	2.6	1	23	863	885	863	885	0.98
16	17	1.2e-05	0.005	19.8	3.8	1	23	891	913	891	913	0.97
17	17	0.0022	0.94	12.6	0.2	1	23	919	943	919	943	0.90

Sequence Information

Coding Sequence: ATGAAGCTGCCGGTCATGTGCCGCACCTGCGATGCAAGGGATACGGATAAATTGTATAAGCTGGCAACAGCCACCAAAAGGTTTCCAGATAAGCTGCTCGCTGACATTCTGGCCGAACTGACACACATCGAGCTAGACGAATCTTTGGCCCACCAACTGCCGCAATGTCTGTGCGGCAGCTGTGCCCGCAAATTGATCGGCGCCTACTACTTCGTCAAGCAGGCGCTGGCTGCGAATGAGCTGCTGATGAACCATGTGCAGGACAACAAAAAGTCGCTGGTGAATGACTGTTTGCAGGAAGTGCCCATGGAGCTGTGCGCGGAGCAGCATGTGGAGGTTAAATTGGAAACGGAAGAGGAGGATATTGAGAATGATATAAACTGCACAGAGTTTAATACAGTAGAAAATGCCATTGATGTGGATAGTGCTAAGAAGTCGACAGATCCGTTAACTATGTTGGACACAGTTAATCAGGAACAGGATGTCCTGGTGACAAGAGCAACGTTTGTCCAGAAGCGCGAATATATTGATGAAGATTCCCTTGATGATCTACCACTGCAGGAGCGGAtcaaaaagcgaaagcaaacgGGCAGCATACGTGCATTCAAAAGGCAAATATTCAAGTGCAAAGATTGCCCAAAGAGTTTCAAGCGTGCTGAGTGTCTAAAACAACATTCGAAGCGCGTGCACAAACCGAACGCCGATTGGTACTCCTGCTCATTTTGTATACGTAAATTTAGTCATGCCGAAGCGCTGCAGACGCATCTCAAGGTGCACCGCGACTCCAAGCGCTCAGCCAACTTGGGGGAGAGCAAAAAGGCCAAGGATATCGATGTCAATGTATGCAAACCGAATGGCTACAAACTCATCGAATGCATGATCTGCCAGAGTCAATATGATAAGATGTCTCATTTACGCAATCATCTGGAACATCATACGGATAGTATAAACTTTGGCACACGCTCCACTCTGCCCATAAATGAACTAGCTAAGCTGTTCTATCCCGATGTTAAGGACGTGAACGAGGaccaattaaaacaaatgatacGCAAAGACTTGGCATCCGGAATTTATCAGCGTTTCTATTCGATAACGAATCAATCTGGCTATGAAATGGATCTCGATAGTTCGGAGACGGAAAGCGAGGCTGAACTCGATGGCGATGAACAGTCCAAACAGCTGCGCAACATACCCAAAGCCAAATACAGCTGTGAATTGTGTCAGGTGCGTTGCCAGcgcaaatatcaattatacGAGCATCAGCGGCAATCGCACGCCTGGTTGGATGCGCCGCATGTCTGTGGTCGCTGCGATGGGCGCTTTGTGAGCGTCCAACTGCTGCGGCATCACAATGAATCGCAGTGCAAGAATGCACAGAAACCCTTCTTGTGCCGCCATTGTCCGTTGCGCTTCCGCTGGCGTCACAATCTCAAGCTGCACACACGGGAGCATCGAATAGCCAATCAAACATTTGAGTGCACCGATTGCAAGCGCGTCTTTGACAAAAAGAAATCCTTGACGGTGCATATGCTGAGCGTGCATGCGGAACAATCCAAGCTCATACCCTGCCAGTGGTGCACACGCAAGTTCTATCGACGCGATTATCTGGTGAAGCATCTGAAGCGTCATGGCATTCGAGAACAGGATATACCGCTTGCCGAGACTCTGATCGCCGCCACATCAAAGCCAAATGGAGCCAAGCGCATCACCTGTAAAATTTGTCACATGAACTTTGACCGCATCATTGATTTGCGTGCACACATACAGTTGGAACTGAAGCTAGCACTATCGCCGCATCAGAATTTCGAGTCGCCGCTTAACTATTCCATAACGAATGAATCTGGCTATGAACTTGAATTGGGAGATTCAGAGACCGATGATGAACACCAACAGCATCAAATGCACATGCCTGCACCGCCAGGCGCACGTCTTGTCTACGTCTGTGAGCTGTGCAAGGTGCAGTGCAAGCGCAAGTACGAGATGATTCAGCATCAGCGTGCCATGCATCGCTTTGACAAGATGCCGCACGAGTGCGAGCGATGCATCTTTAGGTGTGTGTGCAAGAGCATCATGGATCAACATAGGCAATCGCAGTGCCACAGcgtggaaaaaaaatatgcctgCAGCAGATGTGGCTACAAGTTCATGTGGCCCGAGAATCTGCAGCAGCACGAGCAACTACAACATGGCGCCAATGCCGGTGCCGAAGTGAAAGCCACTGATGAAGCTAAAACAGTCACTGCCAGCGCCGATCGTATACCAGCAGCCGACACAGCAGATGCAGGCTTGCCGGATGGCATACAACTGCTCCAATGCCCGCACTGTGATCGCACATATCAGATGAAATCCCGGCTCAATAATCATATACGCGATGTGCACACGAATGGCGATCGCAAACGCAAGGAGGCCATCAAAAAGTTCCTGTGCTCGCTGTGCGGACGAGAAACACAATCAGCGGCCACACTTGTTACGCACATGCGACGTCATACGGGCGAGAAGCCATTCAAATGTGATCTGTGCGAAATGGCATTTCCACGACATTCGGAAATGATATCGCATCGTCGCATGCATACGGGCGAGAAACCATTCCATTGTACGGTTTGTGGGAAGGACTTTGCTCGTTCCGATAAACTGAAGCGGCATATGCTCACGCACAGTGGTTTGAAACCGCACAAGTGTACCTATTGCGACAAGAGCTATCGCCAGGCCAAGGATCTAAAGCTGCACCTGCAGCAGCACACCGGCGAATGCCCCTTCATCTGTGGCACGTGCGGTGAGCGTTTCATACAGGGCACGGCACTCGAGAAGCACCGCATGATGCGACGTCACTTTGATGAGGTTGACGAGCGCAGCACAGTGGTCGCAGCgaattag
Protein Sequence: MKLPVMCRTCDARDTDKLYKLATATKRFPDKLLADILAELTHIELDESLAHQLPQCLCGSCARKLIGAYYFVKQALAANELLMNHVQDNKKSLVNDCLQEVPMELCAEQHVEVKLETEEEDIENDINCTEFNTVENAIDVDSAKKSTDPLTMLDTVNQEQDVLVTRATFVQKREYIDEDSLDDLPLQERIKKRKQTGSIRAFKRQIFKCKDCPKSFKRAECLKQHSKRVHKPNADWYSCSFCIRKFSHAEALQTHLKVHRDSKRSANLGESKKAKDIDVNVCKPNGYKLIECMICQSQYDKMSHLRNHLEHHTDSINFGTRSTLPINELAKLFYPDVKDVNEDQLKQMIRKDLASGIYQRFYSITNQSGYEMDLDSSETESEAELDGDEQSKQLRNIPKAKYSCELCQVRCQRKYQLYEHQRQSHAWLDAPHVCGRCDGRFVSVQLLRHHNESQCKNAQKPFLCRHCPLRFRWRHNLKLHTREHRIANQTFECTDCKRVFDKKKSLTVHMLSVHAEQSKLIPCQWCTRKFYRRDYLVKHLKRHGIREQDIPLAETLIAATSKPNGAKRITCKICHMNFDRIIDLRAHIQLELKLALSPHQNFESPLNYSITNESGYELELGDSETDDEHQQHQMHMPAPPGARLVYVCELCKVQCKRKYEMIQHQRAMHRFDKMPHECERCIFRCVCKSIMDQHRQSQCHSVEKKYACSRCGYKFMWPENLQQHEQLQHGANAGAEVKATDEAKTVTASADRIPAADTADAGLPDGIQLLQCPHCDRTYQMKSRLNNHIRDVHTNGDRKRKEAIKKFLCSLCGRETQSAATLVTHMRRHTGEKPFKCDLCEMAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCDKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQGTALEKHRMMRRHFDEVDERSTVVAAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00519319;
90% Identity: -
80% Identity: -