Basic Information

Insect: Sphaerogastrella javana
Gene Symbol: -
Assembly: GCA_037040025.1
Location: JBANCZ010008105.1:3230-4837[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.4e-16 1.5e-12 49.6 0.0 2 45 366 409 365 409 0.95

2 3 0.068 7e+02 2.6 0.0 28 37 439 448 438 453 0.90

3 3 4.8e-19 4.9e-15 57.5 0.0 2 41 475 514 474 516 0.95

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.4e-16	1.5e-12	49.6	2	45	366	409	365	409	0.95
2	3	0.068	7e+02	2.6	28	37	439	448	438	453	0.90
3	3	4.8e-19	4.9e-15	57.5	2	41	475	514	474	516	0.95

Sequence Information

Coding Sequence: ATGGGACACTCATCCACAATAATGGATATTCAGCGAGTTCTGCTGAACCAACAGAGCAACAACCAAAGCTGCGAGGTTTTACTGGTGGCCAAAGATGGCATTAGTGTGCGCGCCCATCTGTTCGTATTAAGCACATGCAGCGATCTGATGCGTAATCTTCTGGTGAATTTGCCAATTGGCCAGGAGGCGACTGTTATTCTGCCGGATATACGGGGTGAACTGCTTGAGAGCATGTTGTCTTTCATTTATATGGGAGAAACGAATTTACCATCTGCCCTGCTCACCGAGTTTTTGGAAGCCATCAATTTGTTGGGCATCAAATCGGCCATTAGCTTCGAAACTAGTCCCACAGCGATAACCAGCTCGAATGTGACCAGTGGTGCTATGGCAGTTGAGTCAGCCAAGTCAATAAGCGGCTTGCATATTGCGAATACGGCACTCAtggaggaggaagaggaggagggAGTGGTTGGCAGTGCTGTCGTCGGCAAAATACAGATGCCAAACAGTGTATTGGGTGAGatgcaacaaccacagcagcaggagacCAGATCATTGGAATTCCTAGATGTCTATGGTGATCAGCCAAAAATAACATATTCCATTGAGCCCATGGGCGGCACAGCCAGCGGCAATCAGTTCATATTAACAGAGAACACGGGCGCATATACCATCacacaatcatcatcatcactgaACAAGATGAATGCGCCAGCGGGCTCAAATACCATAGATACAGCTGGCACTGGACTAGGCGAGGAAGATGCTGAAGCAGAGGCATCTGATGAGCACGATGAGTCCGAGTCACAGCTAATTGAAGAGGAGTATGTCGCCTCAGCTGGTCCATTAATAGAAATGTCCACCGATGCCGATGTCGATATGGGCGATGAAACCATTCACGACGAAGATGTAGGCGAGGAGGAAGAAGACGATGATTTCATTGATGTCAAGCCACGCAAGTCGCAGCTGGATATCAAAATGTTGAAGTCAAGAGTACGACCACGCTCACCAACCACCGTAAAGAATGCCAAAAAGGCCATGAcgaagcaacaccaacaatatgCAGCgctcaaaaaagaaatcaaggaAGACATTAATGATGCTCTCGATTTGGCTGCCGAAGCAGTGCTGCACGAGGGCCTCAGTCTTCAAAAGGCGGCCGATCGTTTCGATATATCGAAAACAGTACTGTGGCGCCGTGTGCGCTCCAATCCAGCCTACATGAGGATAAAACGGGAGAAGCCATCTCTCTCGGAGGCCTACGAGCGTCTGAAGAAAGGTGACTCCCTGAAAAGCATTAGTCAAGATCTGCGAATACCCATGTCAACCCTACATCGCCACAAAGTTCGCTTAGCAGCCCAGGGCCGTTTACCCGAATTCGTCGCCTGTCGACGGCGTGATAGTACTCCCAAAGAAGAGCTGCGCGACAAGCTGTCCAAGGCGGTGCATGCCTGCATTAATGAGGGCATGTCCCAGAACCATGCAGCGAATCTTTTTGAAATACCCAAGAGTACACTCTGGCGGCACTTGCAGCGTCGCGTTGCAGAGGCCGAGGGTAAAGTCAAAGAAGAGCAACAGGACGACGATGAGGAAGATGCtctcaattaa
Protein Sequence: MGHSSTIMDIQRVLLNQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVNLPIGQEATVILPDIRGELLESMLSFIYMGETNLPSALLTEFLEAINLLGIKSAISFETSPTAITSSNVTSGAMAVESAKSISGLHIANTALMEEEEEEGVVGSAVVGKIQMPNSVLGEMQQPQQQETRSLEFLDVYGDQPKITYSIEPMGGTASGNQFILTENTGAYTITQSSSSLNKMNAPAGSNTIDTAGTGLGEEDAEAEASDEHDESESQLIEEEYVASAGPLIEMSTDADVDMGDETIHDEDVGEEEEDDDFIDVKPRKSQLDIKMLKSRVRPRSPTTVKNAKKAMTKQHQQYAALKKEIKEDINDALDLAAEAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKKGDSLKSISQDLRIPMSTLHRHKVRLAAQGRLPEFVACRRRDSTPKEELRDKLSKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRVAEAEGKVKEEQQDDDEEDALN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01356234; iTF_00901611; iTF_00901419;
90% Identity: iTF_01356234;
80% Identity: iTF_01356234;