Laer006169.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- -
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010000701.1:622490-624103[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6e-15 1.3e-11 44.1 0.0 2 43 368 409 367 411 0.93 2 3 0.056 1.2e+02 2.6 0.0 28 37 441 450 440 455 0.90 3 3 1.3e-20 2.7e-17 62.3 0.0 2 42 477 517 476 519 0.96
Sequence Information
- Coding Sequence
- ATGGGCCACTCATCCACAATAATGGACATTCAGCGCGTCCTACTCCACCAACAGAGCAACAACCAAAGCTGCGAGGTAGTTCTGGTAGCGAAAGACGGTTCGAGTGTGCGCGCCCATCTATTTGTGCTGAGCACTTGCAGCGATCTGATGCGAAATCTCTTGGTGGACTTACCTGTTGGACAGGAGGCAACTGTAATATTACCCGACATTCGCGGCGAACTACTGGAGAGCATGTTGTCTTTCATTTACATGGGAGAAACCAGCTTGCCCTCCGCACTGCTCACAGAGTTTTTGGAAGCAATTAATCTATTGGGCATCAAATCGGCAATAAGTTTCGAAACTAATCCCACAGCGGTGACCACCACTAATGTGGTCAGTGATGCAATGACAGTTGAGGCAGCAAAATCAATTAGTGATTTGCATATTGCAAATACGGCGCTtatggaggaggaggaggaagtgGACGCTGGTGTTGTAGTCGGCAAACTTGAAATGACAAACGCTGTATTGGGTGACTCACAACAGGTGCAGGAGCAGGACGCAAGAGCTTTGGAATTTCTCGATGTGTATAGTGATCAGCCAAAGATTACTTATTCCATTGAGCCCATGGCCGGCTCTGCAAATGGAAACCAGTTCATATTAACAGAGAGCACTGGCGCATTTACAATCACGCAAGCAACTCCCACACTGACCAAGCTGGGCGGACCAAACAACTCAACAGTAGTGGCGCCAGTTGGCGCTGCAATGGGTGTTGTCGACACGGAAGCAGATGCAGAGGTTACTGATGAGCATGATGAAACCGAGTCGCAGTTAATTGAAGAGGAGTATGTCGCATCGACCGGCCCACTAATAGAAATGTCAACTGATGCCGATGTAGATGATGTGGGTGACGATGGAATGCACGAGGAGGACGTCGGCGAAGATgacgaagaggaggaggaactgATTGATGTCAAACCACGCAAGACACATCTTGATCAcatcaaaatgttaaaaacaaGCGTTCATTCACGTTCACCGTCCGCCAGAGTTTCCAAGAAGACGATGACCAAGCAACATCAGCAATATGCCGCActcaaaaaagaaatcaaggAGGACCTCAACGATGCGCTAGATTTGGCAGCTGATGCTGTGCTGCACGAGGGGCTAAGCCTTCAAAAGGCCGCAGATCGTTTTGAGATATCGAAAACCGTGTTGTGGCGCCGTGTGCGTTCAAATCCCGCCTACCTAACAAAAAAACGAGAAAAGCCATCCCTATCAGAGGCCTACGAGCGATTAAGAAAAGGAGATTCCCTCAAAAGCATTAGCCAAGATCTTCGCATACCCATGTCCACACTCCACCGCCACAAAGTCCGGCTTGCGGCACAGGGTCGTTTGCCCGAATTCGTCGCCTGTCGACGGCGGGACAGTACTCCAAAGGATGAACTACGCGACAAGCTGGCCAAGGCAGTACACGCCTGTATCAACGGTGGTATGTCCCAGAATCATGCAGCCAACCTCTTCGAGATACCCAAAAGCACACTCTGGCGACACCTGCAACGCCGTGTTACCGAGGCGGAGCGTAAAGTGAAGGAAGAGCAGGAAGACGACGACGAAGAGGATAcgcttaattaa
- Protein Sequence
- MGHSSTIMDIQRVLLHQQSNNQSCEVVLVAKDGSSVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAVTTTNVVSDAMTVEAAKSISDLHIANTALMEEEEEVDAGVVVGKLEMTNAVLGDSQQVQEQDARALEFLDVYSDQPKITYSIEPMAGSANGNQFILTESTGAFTITQATPTLTKLGGPNNSTVVAPVGAAMGVVDTEADAEVTDEHDETESQLIEEEYVASTGPLIEMSTDADVDDVGDDGMHEEDVGEDDEEEEELIDVKPRKTHLDHIKMLKTSVHSRSPSARVSKKTMTKQHQQYAALKKEIKEDLNDALDLAADAVLHEGLSLQKAADRFEISKTVLWRRVRSNPAYLTKKREKPSLSEAYERLRKGDSLKSISQDLRIPMSTLHRHKVRLAAQGRLPEFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEDDDEEDTLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01356053;
- 90% Identity
- iTF_00901611;
- 80% Identity
- iTF_00901611;