Basic Information

Insect: Solenopsis invicta
Gene Symbol: stc
Assembly: GCA_016802725.1
Location: NC:11247187-11252426[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.3 1.1e+04 -3.7 1.1 15 19 482 486 481 486 0.82

2 15 0.33 1.5e+03 -1.0 1.2 4 10 515 521 514 524 0.81

3 15 0.00082 3.9 7.3 18.5 4 18 532 546 530 547 0.94

4 15 1.7 8.1e+03 -3.3 0.4 5 10 572 577 572 577 0.93

5 15 9.6e-09 4.5e-05 23.0 17.2 1 18 583 600 583 601 0.98

6 15 1.5e-05 0.068 12.9 10.4 1 18 639 656 639 657 0.91

7 15 1.5 7e+03 -3.1 0.7 5 10 686 691 686 691 0.94

8 15 2.8e-06 0.013 15.1 13.4 4 18 704 718 697 719 0.86

9 15 3 1.4e+04 -4.6 1.6 5 10 748 753 748 753 0.90

10 15 0.012 59 3.5 11.3 1 11 759 769 759 781 0.88

11 15 5.4e-08 0.00025 20.6 10.9 1 19 786 804 786 804 0.98

12 15 0.52 2.5e+03 -1.7 0.6 5 10 832 837 830 837 0.95

13 15 3 1.4e+04 -5.6 8.5 10 19 851 861 840 861 0.78

14 15 4.8e-06 0.023 14.4 10.1 1 16 897 912 897 923 0.85

15 15 1.1e-05 0.053 13.2 13.6 1 19 929 948 929 948 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.3	1.1e+04	-3.7	1.1	15	19	482	486	481	486	0.82
2	15	0.33	1.5e+03	-1.0	1.2	4	10	515	521	514	524	0.81
3	15	0.00082	3.9	7.3	18.5	4	18	532	546	530	547	0.94
4	15	1.7	8.1e+03	-3.3	0.4	5	10	572	577	572	577	0.93
5	15	9.6e-09	4.5e-05	23.0	17.2	1	18	583	600	583	601	0.98
6	15	1.5e-05	0.068	12.9	10.4	1	18	639	656	639	657	0.91
7	15	1.5	7e+03	-3.1	0.7	5	10	686	691	686	691	0.94
8	15	2.8e-06	0.013	15.1	13.4	4	18	704	718	697	719	0.86
9	15	3	1.4e+04	-4.6	1.6	5	10	748	753	748	753	0.90
10	15	0.012	59	3.5	11.3	1	11	759	769	759	781	0.88
11	15	5.4e-08	0.00025	20.6	10.9	1	19	786	804	786	804	0.98
12	15	0.52	2.5e+03	-1.7	0.6	5	10	832	837	830	837	0.95
13	15	3	1.4e+04	-5.6	8.5	10	19	851	861	840	861	0.78
14	15	4.8e-06	0.023	14.4	10.1	1	16	897	912	897	923	0.85
15	15	1.1e-05	0.053	13.2	13.6	1	19	929	948	929	948	0.97

Sequence Information

Coding Sequence: ATGGCTTCCTGGGACGGCTCGTATCCGGAGGATCTCAATTATCTGATCTACGCCGACCGGAACGCGGCTGACGCCGCTGCCGCGGGGAATTGGCCGTATTACACCGAGAACACTGCGTACCTGCGCGACCTGTCCGCAAGAGGCTATTATCCAGGAGCCGGGAGTGGTCCAGCAGCGGCTTTTTACCAGGTCGACGCCAGTCAGCACCCGTCGAACATGGTGCCTTTAGAGAACAATGCCTATCAGGAACCGGTACTGCCAGATACCTCGCTCGCGGACGACGCGCAATCGTCGAACAGCGTCGCTTCGACGTCACGCAACGCGCCGTCTTTCTCTCGCGGTGGCTATAGACCGAGGCCCAGGGGCAACCGGGCCTCTGGCAAGCCTGCACCTCTAACCGACGCGGTCATTCAATCCACCATAGTGGAGAATTCCAATCTGCATCCCATGGCTAACGAATTCGTACCAAACAACCAGGTCAGGTTCAGGAGGGACTCCAGGTTCAAGAGGTATGATAACGATAGCAACGCGACAGGCAGCGGTTTTAATGCTTGCACGCAGGAATTCAAGCCAAATTCAGCTGCGTCATCTTGGTCAGACAACAGATATAAAGGTGAAAGACGTTATGACAACAGAAGAGACATGAATTACAGACAGAGCAAGCCACAGAATGCACAGGCTCCAACAAGATCTGGCTATAGGGATACTCATAGGACATACAATACAAGAAACTACAATAAATTTTCGGACAGCAGGTCTCACAGAAAAAAGTTTCAGTCGGAGGTATCTGTAGAACAAAATGCCACTGGAGAACCTCAAGCATCTGCAACTGAAGCCACTGATTCTGCCACATATAGTAGTCaggaaaataatattgttaaggAGTTTCAAGATGATGTCTCATCTATGAGTACAAAAACCAACAGAAGCAGAGAAGAGACGTCGATGTACGAGGATAACAATTCAGAAAATGTGTCTTCAAAAGTTCTTGAAGCACGAAATGGTAGATCTAAGCGATTTGTTAATACGCCTGATTATCACAGATACAATTTGGACGACATACAATCTGCTGAACCTACTGTTAGGCGTAaaacaacagcaacagcaaaGTATATGCAAAAAAGAAATCCTGAAGTGATGAGTTATAAGGAGAGGAAAGTAGAAAATTGGAGAGATAGAACAGAAAATAATGAGATGACACACGCTCCACAGGGAAAAAATccaaggaaaaaaaatgaagatgaaAACATTGATGACGATGCGAGTCAAAGAGAAAGATTAACTGAGCAATTGAACAGGGGAACATTGGAATGTCTGGTTTGTTATGAACATATTAAACAAAATGACTATGTTTGGTCCTGCAGCAATTGTTATCACGTATTGCATCTgagatgtataaaaaaatggGCAAAGTCATCTCAGGGTGAGAGTAACAATTGGAAATGTCCAGCTTGTCGGAATATTAGTTTTTGCGTGCCTGAAGATTACTTCTGCTTCTGTGGAAAAATGAGGTTGCCGGAGTGGAATCGCAGAGACGTGGCGCACTCGTGCGGCGAAATCTGCGGCCGGCATCTATCAAAGAAAAACTGCCCGCACAAATGCACTCTGCTTTGCCATCCCGGTTGTTGTCCACAATGTGTGGCAATGGTGACCAAGTATTGCGGATGTAGGAGAACATCCAAGATGCTTCTCTGTAGCACTCACGAATTATTAACGTGCGATTCGATATGTGGGAAGGATCTGTCGTGCGGCAAGCACACCTGCCAGAAGAAGTGCCATCAGGGAGAGTGTGGACCTTGCGACAAAGTTGCACAACAAAcatgttattgtaataaaaacacTCAGGAAGTACCCTGCCGAGCCAATGTCGCAGATACGTATTGCTGTGATAATATTTGTAGCAAACCGTTAGATTGTGAGAAACATTATTGTCAGAAAGTTTGTCATCCAAACGCCTGCGAGCCCTGTTATTTGACCCCCGAAAGAGTTACGACGTGTTGTTGTGGTCAAACGTCGCTAACGGAGAAGAGAGAGAGCTGCATAGATCCTGTGCCTACCTGCGATAAAATCTGCTCGAAGCGCTTAAAATGCGGCCAACCTAGTAATCCACACACTTGCAAGGCACCATGTCATGTGGGAGAATGTCCGGAATGTGACTTGAGCACCGACGTTATGTGTCGATGTGGTAACATGGATCGTGAGATTGCTTGCAAGGATTTGACGACCAAGGCTGACGACGCACGCTGCGAGAAACGTTGCAAGAAAAAAAGATCTTGCGGTAAGCATAACTGCAATCAGTTGTGCTGCATCGACATCGAGCACATCTGTCCATTGCCGTGTTCGAAAAATTTGAGCTGTGGTCGGCATAAATGCCCAGAGAGATGTCACATGGGAAGATGTTCGTCTTGCTGGGAGACCAGTTTTGAAGAATTATATTGCGAATGCGGCGCCGAAGTGATTTATCCGCCGATACCATGCGGCACGAGGAGACCGACTTGCAACCGACCATGTTCGCGCGAACATTCGTGTGACCACGAGGTATTGCACAACTGTCACAGCGAGCCCACATGTCCCCCTTGCAGCGTCCTGACTCAGAGATGGTGCCACGGCAAACATGAACTCAGGAAAGCGGTACCGTGTCACGTGAAAGAAATTTCGTGTGGTCTGTCGTGTAACAAGCCATTGGCGTGTGGACGGCATAAATGCATCACGATGTGCCATGCCGGACTTTGCGAGAGACCTGGACAACAGTGCACTCAACCTTGCACTACGGCGAGGGAATTGTGTGGACATATCTGCGCCGCTCCATGCCATGAAGGCAAGTGTCCAGATACGCCTTGTAAAGAAATGGTTAAGGTTACGTGTCAGTGTGGACATAGGACCATGAGTCGTGTCTGTGAAGATAATGCGAAGGAATATCAGAGAATAGCGAGCAACATATTGGCTAGTAAGATGGCTGATATGCAACTTGGTCATTCCGTTGATTTGGAAGAAGTATTTGGACAAGGTGCAAAAAAGCAGAATCAATTGAAGACTTTGGAATGCAATGATGAGTGCAAGATAATAGAAAGAAACAGGAGGCTCGCATTGGGATTGCAGATTGTTAATCCAGACTTAAGTGGTAAATTGATGCCCAGATATAGCGATTACATGAAACAGTGGGCCAAGAAAGACCCACACTTCTGTCAAATGGTTCACGACAAGTTGACGGAATTAGTACAACTAGCGAAAACATCCAAGCAGAAGTCTCGGAGTTATTCGTTTGATGTAATGAACAGGGAAAAACGTCATTTCGTGCACGAATCCTGTCAGCATTTCGGTTGCGAGAGTCAAGCGTACGATGAGGAGCCTAAAAGAAATGTCGTTGCCACAGCCGTAAAAGATAAGTGTTGGCTACCAAGCTACAGTTTATTAGAAATGATACAAAGAGAAAAAGGGCAAAGAAAGGTTCCAGGTCCGGTACTCAACACTTCGAAGGGAAATAATTCTACAAAGACTGTTCTTTCATTACCTGTAAAACAGAATCAGCAATCGCTGCCATCATCATCAACTGCTAAAACTGCTGAGAAAGAAATAGATTATTTTGATTATCGAGGATAA
Protein Sequence: MASWDGSYPEDLNYLIYADRNAADAAAAGNWPYYTENTAYLRDLSARGYYPGAGSGPAAAFYQVDASQHPSNMVPLENNAYQEPVLPDTSLADDAQSSNSVASTSRNAPSFSRGGYRPRPRGNRASGKPAPLTDAVIQSTIVENSNLHPMANEFVPNNQVRFRRDSRFKRYDNDSNATGSGFNACTQEFKPNSAASSWSDNRYKGERRYDNRRDMNYRQSKPQNAQAPTRSGYRDTHRTYNTRNYNKFSDSRSHRKKFQSEVSVEQNATGEPQASATEATDSATYSSQENNIVKEFQDDVSSMSTKTNRSREETSMYEDNNSENVSSKVLEARNGRSKRFVNTPDYHRYNLDDIQSAEPTVRRKTTATAKYMQKRNPEVMSYKERKVENWRDRTENNEMTHAPQGKNPRKKNEDENIDDDASQRERLTEQLNRGTLECLVCYEHIKQNDYVWSCSNCYHVLHLRCIKKWAKSSQGESNNWKCPACRNISFCVPEDYFCFCGKMRLPEWNRRDVAHSCGEICGRHLSKKNCPHKCTLLCHPGCCPQCVAMVTKYCGCRRTSKMLLCSTHELLTCDSICGKDLSCGKHTCQKKCHQGECGPCDKVAQQTCYCNKNTQEVPCRANVADTYCCDNICSKPLDCEKHYCQKVCHPNACEPCYLTPERVTTCCCGQTSLTEKRESCIDPVPTCDKICSKRLKCGQPSNPHTCKAPCHVGECPECDLSTDVMCRCGNMDREIACKDLTTKADDARCEKRCKKKRSCGKHNCNQLCCIDIEHICPLPCSKNLSCGRHKCPERCHMGRCSSCWETSFEELYCECGAEVIYPPIPCGTRRPTCNRPCSREHSCDHEVLHNCHSEPTCPPCSVLTQRWCHGKHELRKAVPCHVKEISCGLSCNKPLACGRHKCITMCHAGLCERPGQQCTQPCTTARELCGHICAAPCHEGKCPDTPCKEMVKVTCQCGHRTMSRVCEDNAKEYQRIASNILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKIIERNRRLALGLQIVNPDLSGKLMPRYSDYMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDVMNREKRHFVHESCQHFGCESQAYDEEPKRNVVATAVKDKCWLPSYSLLEMIQREKGQRKVPGPVLNTSKGNNSTKTVLSLPVKQNQQSLPSSSTAKTAEKEIDYFDYRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00385965;
90% Identity: iTF_01354998;
80% Identity: -