Sinv011910.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Solenopsis invicta
Gene Symbol
ush
Assembly
GCA_016802725.1
Location
NC:4925978-4939152[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0046 0.41 10.9 0.1 3 20 258 275 256 277 0.92
2 8 2.9e-05 0.0025 17.8 1.3 1 23 310 332 310 332 0.98
3 8 0.065 5.7 7.3 1.6 3 20 384 401 383 403 0.93
4 8 0.0084 0.74 10.1 4.6 2 21 620 639 619 640 0.94
5 8 0.063 5.5 7.3 0.0 3 20 668 685 666 687 0.91
6 8 0.011 0.98 9.7 0.0 2 23 726 747 725 747 0.95
7 8 0.006 0.53 10.5 1.4 1 23 753 775 753 775 0.99
8 8 0.064 5.6 7.3 0.5 3 21 875 893 874 894 0.92

Sequence Information

Coding Sequence
ATGGTCGTCTCGCGGACTACGTCCGACCGGCGCCGGCGATTTCTGAAGAAATGGGAGGATGAGGAGTGGAGCGACTCGGAGAAGACCCCGTCGGTGAGCAGCGGCGTGGACGGTGGCGGATCGGCGGTATCAAGTCCGGTCGCACCGCCGGTGATTGAGGAGGACTCGAGTTTGCCACCTCCTCCGAGACTTAACCCCACGTCGTCCTCGACCAGCTCCTCCGCAAGCGAAGACATCAAGCTACGCCTCAGCGTGCTCTCGGAGGACACGAGGAAGCGCCTAGTTAATCTCACTGAGGACATCGAGGCTAGAGCAGCAAGAGATCGCCATGGACCGCCCAGGACCGTGCGGACACGAGAGTCGAGTCCCAAGGACGTCGACGAGGAGCAGCAGGGGGCTAAGGAGGACGAGTGCCAGACGAGGCCGTCGTCCTCGTTGTCGTCCAGTGCCGTGAAGAGGCGGGACTCTGCCTGCCGCAGGGACTCAGAGGACTCGATCGCCGCGGGGGAAACCAAGAGGATACGACTCGACGACGAGGCAGCACCAAGACTGAGACTCAATACTAGTCTGGCGACGGATCCCGCCCTGCGgcccgccgccgtcgccgccctTACCGTGAAGCCCGAGAACACGTCGCCGCCGAACCCGACGCCGCCGCTTCCGGCTGGACTGCAGAACGCGATCGCATCAGGTCGCTTGTTTGTCCTTCCAACCGACGGCAAGGAGACGATCACGGTGGAGCCGGCCAGGCCTCCTCCGACTGGCCTGTTCTGCCCACCGTGCGGCATCCGATTCAGCTCGGCGAGCACCCTCGAGGCCCATCGCACCTTCTACTGCGCCCACCGACCTCGCGTAGACGAGGATACGGCgaacgacgaggacgacgaggGTGGCAAGTCCGGCGGCAAGTTCGAGGTACGGAAGGCGTATGCGTGCCCGCACTGCTCCTACAGCGCCGACAAGAAGGTGTCCCTGAATCGCCACATGCGAATGCACGCGGCCTCGCCGGCACCGCCAACGGTACCGTCATCtgtggcagcggcggcggttGCGGTGGTGGCGAATCCGAACTCCTCGACGGGCAACTCGGCCGGGGCTGGTCAAACCACCGCGGCTAATGGTTCTCTGAACGAGGAGGCAGAGAGATACTGCCGGAACTGCGACATTCGATTCAGCTCCTTGAAGACGTACAGGGCGCACAAAACGCATTATTGCAGCACGAGGCACGTGGTGAAGGATACGACGTTGCCGACACCAACAGCGACGCCGGCGTCTTCGGTGAAGGCGTCGCCGCCGACCAGTTCGAGTCCTGGTGATTCGCCACCCCCGCAGCCATGCCTGGCGCTGCCCACCAACCCCATCCTCATCGTGCCGTATTCGTTATTCCGCGGTGCGAGCGTTCTCGCCGCGCCAGCACTTCCGGCCCCCGACACAGCGTGCTTCCTTTTGCCAAATGGATCCCTTCAGCCAATGACGAGGGGCCTCGCTACCTCGGCGCAGAACGCCGTGGTGGAACCACCGGCCGTTCTGAGGGCGGCGAACAAGCCCTCGACGCCGGCGTCGGTGGTCGCGACAGCGTCCACGTCGCCGTCCGCCTCGGCACCCCTCGATCTCAGCATACGCAGGTCACCAGTGCATCAGGACGAGAAGGAGAACAGGATGTCGCCGGCGCCGTCATCTCTGCCTCCGCCTCCGGGCAGTCCCAGATCTAGAGGCAGCGGCAGTCCAAGAACGAGGTCCATCGGTCCGACTCAGACTGCCGTCGTCGCGCCACCCCCGCCCACGGAGCTCGCCCTGAGACTCGCTGAACTGCCGCCGCCCCCTGTTCCCGGGGTGCTCGTCAAGCAGGGCGTCTCCAAATGCAAGGAATGCAATATCGTGTTCTGCCGACACGAGAACTTTGTCGCTCATAAGAAGCATTACTGCCAGGCGAGGGAGACGACGGTGAACAATAGTCCGCCGCCTCCCGGCACGCCCTCGCCACCTCTGGTCCAGCTCATCTGTGCCGCGTGTGGTATCAAGTTCGCTTCCATAGACAATTTGGTTGCTCATCAAGCGTTCTACTGTCCCAAAAGGCCCGAACCCCAGGAGCATCACGCGCGGTGTTCTAAGTGCAAGGCGATAATAGAACCCGGCAGCAATCATACCTGCACCAGCAGTGCGACTGGCGGCTGGCGATGCCCAGTCTGCGGCGCCGTTAGTCCCACGGCTGGCGCCGCCCAGCGTCACATGGACGCTCATCAAGGTGTTAAGGCCTTCCGGTGTACGATCTGTCGTTACAAGGGCAACACTTTACGCGGCATGAGGACCCACATTAGAATGCACTTTGAGAAGCGCGGCACTGATCTACAGGAGGAGAATTATATAACGTGCGTGCTGGACGACGAGGTGACGTTGCCGCTGCCAGAACCCGCGGCTTCCACGACACCGGAGGAGATTCCTGCTGAGATCCAGGTGAACGGTAAGACGGATACAAGAAAGAGTCCGCAACCACCAcccccaccgccgccgccgccaccaccgttGGCGCCAGCAGTCGCTGGCAAGCAGGTGAAACAGGAACGCGAAGACACGCCACCGCCAGAGGAGAGTCTAGATCCCAACAAGAGCGGGCCGCGCTACTGCCGCTCCTGCGACATCAGCTTCAACTACCTGAGTACATTCATCGCCCACAAAAAGTTCTACTGTTCGAGTCACGCCGGCGAAGCGagcaataacaataacaacaataacaacaacaacaataatgCCAGCGGCCATCCGACTACGCCGCCGACCGGCAGGACTGAAGCGTCGGTGCTCTAA
Protein Sequence
MVVSRTTSDRRRRFLKKWEDEEWSDSEKTPSVSSGVDGGGSAVSSPVAPPVIEEDSSLPPPPRLNPTSSSTSSSASEDIKLRLSVLSEDTRKRLVNLTEDIEARAARDRHGPPRTVRTRESSPKDVDEEQQGAKEDECQTRPSSSLSSSAVKRRDSACRRDSEDSIAAGETKRIRLDDEAAPRLRLNTSLATDPALRPAAVAALTVKPENTSPPNPTPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPPPTGLFCPPCGIRFSSASTLEAHRTFYCAHRPRVDEDTANDEDDEGGKSGGKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPPTVPSSVAAAAVAVVANPNSSTGNSAGAGQTTAANGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTTLPTPTATPASSVKASPPTSSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPALPAPDTACFLLPNGSLQPMTRGLATSAQNAVVEPPAVLRAANKPSTPASVVATASTSPSASAPLDLSIRRSPVHQDEKENRMSPAPSSLPPPPGSPRSRGSGSPRTRSIGPTQTAVVAPPPPTELALRLAELPPPPVPGVLVKQGVSKCKECNIVFCRHENFVAHKKHYCQARETTVNNSPPPPGTPSPPLVQLICAACGIKFASIDNLVAHQAFYCPKRPEPQEHHARCSKCKAIIEPGSNHTCTSSATGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDEVTLPLPEPAASTTPEEIPAEIQVNGKTDTRKSPQPPPPPPPPPPPLAPAVAGKQVKQEREDTPPPEESLDPNKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNNASGHPTTPPTGRTEASVL