Basic Information

Insect: Leptothorax acervorum
Gene Symbol: ush
Assembly: GCA_035220615.1
Location: JASTWQ010000051.1:865878-870542[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0079 1.4 10.9 0.1 3 20 245 262 243 264 0.92

2 8 4.9e-05 0.0087 17.9 1.3 1 23 297 319 297 319 0.98

3 8 0.11 20 7.3 1.6 3 20 377 394 376 396 0.93

4 8 0.017 3 9.9 4.4 2 21 609 628 608 629 0.94

5 8 0.11 19 7.3 0.0 3 20 657 674 655 676 0.91

6 8 0.007 1.2 11.1 0.0 2 23 715 736 714 736 0.96

7 8 0.01 1.8 10.6 1.4 1 23 742 764 742 764 0.99

8 8 0.11 19 7.3 0.5 3 21 860 878 859 879 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0079	1.4	10.9	0.1	3	20	245	262	243	264	0.92
2	8	4.9e-05	0.0087	17.9	1.3	1	23	297	319	297	319	0.98
3	8	0.11	20	7.3	1.6	3	20	377	394	376	396	0.93
4	8	0.017	3	9.9	4.4	2	21	609	628	608	629	0.94
5	8	0.11	19	7.3	0.0	3	20	657	674	655	676	0.91
6	8	0.007	1.2	11.1	0.0	2	23	715	736	714	736	0.96
7	8	0.01	1.8	10.6	1.4	1	23	742	764	742	764	0.99
8	8	0.11	19	7.3	0.5	3	21	860	878	859	879	0.92

Sequence Information

Coding Sequence: ATGAGCGCCTCTGTTTCGGTTCCAGGGGAGGATGAGGAGTGGAGCGACTCGGAGAAGACCCCGTCGGTGAGCAGCGGTGTGGACGGTGGCGGATCGGCGGTATCGAGTCCGGTCGCACCGCCGGTGGTCGAGGAGGACTCGAGTTTACCGCCCCCTCCGAGACTCAACCCCACGTCGTCTTCGACGAGCTCTTCCGCCAGCGAGGACATCAAGCTGCGCCTCAGCGTGCTCTCAGAGGACGCGAGGAAGCGCCTGGCCAGCCTCACCGAGGACATCGAGGCTAGGGGCATAAGAGACCGCCATGCGTCGTCCAGGAGCGCGCGGACGCGGGAGTCGAGTCCCAGGGATAACGATGAGGATGCCAAGGAGGACGACTGCCAGCCGAGGTCGTCGTCCTCGTTGTCGTCCACCGTCGTCAAGAGGCGGGACTCCGTCTGCCGCAGGGACTCGGAGGACTCGGTCGCCGCGGGGGAGACCAAGAGGATACGACTCGACGACGAGGTAGCACCAAGACTGAGACTCAATACTAGTCTGGCGACGGATCCCGCACTGCGacccgccgccgtcgccgccctTACTGTGAAGCCGGAGACCACGTCGCCGCCGAATCCGACGCCGCCACTTCCGGCCGGGCTGCAGAACGCGATCGCATCAGGTCGCCTGTTCGTCCTGCCGACCGACGGCAAGGAGACGATCACGGTGGAGCCGGCCAGGCCGCCGACCGCCCTGTTCTGCCCGCCGTGCGGCATCCGGTTCAGCTCGGCGAGCACCCTCGAGGCCCATCGCACCTTCTACTGCGCCCACCGGCCCCGCGTGGACGAGGACGCGGCgaacgacgaggacgacgacggcggcaaGTCCGGCGGCAAGTTCGAGGTGCGGAAGGCGTACGCGTGCCCGCACTGCTCCTACAGCGCTGACAAGAAGGTGTCCCTGAATCGTCACATGCGGATGCACGCGGCCTCGCCGGCGCCGCCGACGataccgtcgtcgtcgtcggtggcggcggcggcggcggcggcggcagtagcAATGGTGGCGAACCCGAACTCCTCGACGAGCAATTCGGCTGCGCCCGGTCAGACCACAGCATCCAACGGTTCCTTGAACGAGGAGGCCGAGAGATACTGCAGGAACTGCGATATTCGATTCAGCTCCTTGAAGACGTACCGgGCGCACAAAACGCATTATTGCAGCACGAGGCACGTGGTGAAGGATACGTTGCCGACGCCGACGGCGACGCCAGCATCCTCGGTGAAGGCGTCGCCGCCGACCAGTTCGAGTCCTGGTGACTCGCCACCCCCGCAGCCGTGCCTGGCGCTGCCTACCAACCCCATCCTCATCGTGCCGTATTCGTTGTTCCGTGGCGCGAGCGTTCTCGCCGCGCCGGCACTTCCGGCGCCCGACACAGCATGCTTTCTTTTGCCAAACGGTTCCCTTCAGCCAATGACGAGGGGCCTCGCTTCAACGGCCCAGAACGCCGTGGTAGAGCCGCCGGCCGTCCTGAGGGCGGCGAACAAGCCCTCGACGCCGGTGGTCGCGGCGGCGTCCACGTCGCCATCCGCCTCGGCGCCCCTCGATCTCAGCGTACGCAGGTCGCCGGTGCACCAGGACGAGAAGGAGAACAGGATGTCGCCGGCACCGTCATCCCTGCCGCCTCCGGGCAGTCCCAGATCCAGAGGCAGCGGTAGCCCCAGAATGAGGTCCATCGGTCCGGCCCAGACTGCCGCTGTCGCGCCACCCCCGCCCACGGAACTCGCCCTGAGACTCGCTGAACTACCGCCGCCCCCCGTTCCCGGAGTGCTTGTCAAGCAGGGCGTCTCCAGGTGCAAGGAATGCAACATCGTATTCTGCCGACACGAGAACTTCGTCGCTCATAAAAAGCACTACTGCCAGGCGAGGGAGACAACGGTGAGCAACAGTCCGCCGCCTCCCGGCACGCCCTCGCCGCCCCTGGTCCAGCTCATCTGCGCCGCGTGCGGCATCAAGTTCGCTTCCATAGACAATCTGGTCGCCCATCAGGCGTTCTACTGTCCCAAGAGGCCCGAACCCCAAGAGCATCATACACGGTGTTCTAAGTGCAAGGCGATGATAGAACCTGGCAGCAGTCATACCTGCAGCAGCGGTGCGACTGGCGGCTGGCGATGCCCGGTCTGCGGTGCCGTCAGTCCCACGGCCGGTGCCGCTCAGCGTCACATGGACTCCCATCAGGGCGTCAAGGCCTTCCGGTGCACGATCTGTCGTTACAAGGGCAACACTCTGCGCGGCATGAGGACCCACATTAGGATGCACTTCGACAAGCGTGGCACTGATCTACAGGAGGAGAATTATATAACGTGCGTGCTGGACGACGAGGCGACGCTGTCGACGCCAGAACCCGTGGCTACCACGACGCCAGAGGAGATCCCTATTGAGATTCAGGTGAACGGTAAGACGGAGATAAGGAAGAGCCCGcagccgccaccgccgccgccaccgccgttgACGCCGGTGGTCGCCGGTAAGGTGAAGCAGGAACGCGAGGACACGCCACCGCCGGACGAGAGTCTGGACCCCAGCAAGAGCGGGCCGCGCTACTGTCGCTCCTGTGACATCAGCTTCAATTACCTAAGCACCTTCATCGCCCACAAGAAGTTCTACTGCTCGAGTCACGCCGGCGAGGCGagcaataacaataacaataataacaacaataacaacaacAACGCCAGCGGCCATCCGACGACGCCGCCGACCGGCAGGACCGAGGCGTCGGTGCTTTAA
Protein Sequence: MSASVSVPGEDEEWSDSEKTPSVSSGVDGGGSAVSSPVAPPVVEEDSSLPPPPRLNPTSSSTSSSASEDIKLRLSVLSEDARKRLASLTEDIEARGIRDRHASSRSARTRESSPRDNDEDAKEDDCQPRSSSSLSSTVVKRRDSVCRRDSEDSVAAGETKRIRLDDEVAPRLRLNTSLATDPALRPAAVAALTVKPETTSPPNPTPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPPTALFCPPCGIRFSSASTLEAHRTFYCAHRPRVDEDAANDEDDDGGKSGGKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPPTIPSSSSVAAAAAAAAVAMVANPNSSTSNSAAPGQTTASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTLPTPTATPASSVKASPPTSSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPALPAPDTACFLLPNGSLQPMTRGLASTAQNAVVEPPAVLRAANKPSTPVVAAASTSPSASAPLDLSVRRSPVHQDEKENRMSPAPSSLPPPGSPRSRGSGSPRMRSIGPAQTAAVAPPPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETTVSNSPPPPGTPSPPLVQLICAACGIKFASIDNLVAHQAFYCPKRPEPQEHHTRCSKCKAMIEPGSSHTCSSGATGGWRCPVCGAVSPTAGAAQRHMDSHQGVKAFRCTICRYKGNTLRGMRTHIRMHFDKRGTDLQEENYITCVLDDEATLSTPEPVATTTPEEIPIEIQVNGKTEIRKSPQPPPPPPPPLTPVVAGKVKQEREDTPPPDESLDPSKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNNNASGHPTTPPTGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00015644;
90% Identity: iTF_01355715;
80% Identity: -