Basic Information

Insect: Solenopsis invicta
Gene Symbol: -
Assembly: GCA_016802725.1
Location: NC:26715825-26727481[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00085 0.075 13.2 0.7 1 23 359 382 359 382 0.96

2 10 1.8e-06 0.00016 21.6 0.7 1 23 388 410 388 410 0.99

3 10 1.4e-07 1.3e-05 25.1 0.5 1 23 416 438 416 438 0.99

4 10 0.011 1 9.7 3.6 1 23 444 466 444 466 0.99

5 10 1.2e-05 0.0011 19.0 0.3 1 20 472 491 472 492 0.96

6 10 0.0047 0.41 10.9 1.9 1 23 501 521 501 521 0.97

7 10 1e-06 8.8e-05 22.4 0.5 3 23 529 549 528 549 0.98

8 10 0.0001 0.0088 16.1 1.4 1 23 555 577 555 577 0.98

9 10 0.0011 0.094 12.9 3.4 1 21 583 603 583 606 0.96

10 10 0.45 39 4.6 5.7 3 23 614 635 612 635 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00085	0.075	13.2	0.7	1	23	359	382	359	382	0.96
2	10	1.8e-06	0.00016	21.6	0.7	1	23	388	410	388	410	0.99
3	10	1.4e-07	1.3e-05	25.1	0.5	1	23	416	438	416	438	0.99
4	10	0.011	1	9.7	3.6	1	23	444	466	444	466	0.99
5	10	1.2e-05	0.0011	19.0	0.3	1	20	472	491	472	492	0.96
6	10	0.0047	0.41	10.9	1.9	1	23	501	521	501	521	0.97
7	10	1e-06	8.8e-05	22.4	0.5	3	23	529	549	528	549	0.98
8	10	0.0001	0.0088	16.1	1.4	1	23	555	577	555	577	0.98
9	10	0.0011	0.094	12.9	3.4	1	21	583	603	583	606	0.96
10	10	0.45	39	4.6	5.7	3	23	614	635	612	635	0.97

Sequence Information

Coding Sequence: ATGCAGCAGCAAACGATCTCGCATAATATAACCGGGCCCGAGCAGTCGCAAGAGGAAGTTCAGCTGACCGAATTGCTGCCGGTAAAGCAATCgcgtattaaagaaaatgtcttCAAGAATGCCGACGCGACCGACGCTTTGAAGGCGCTCATGAGTCTCTCGGGCGATTGCGACGATAGCGAAAGCTTTGACCTGCAAGAGTTCAACTTCTACAAGAACATCGAACAATTTGACCACCAGAGCAGCAAGCATCGACGAATGGATGGTCAACGGAAGAGATCAATGGAAAAGACTAGAAACGGTGCTAGAAACGTGGacttaaataaagagaaaaatagcGAGATGGCGGAGAAGAAAGTTCGTGATGACAGAAAAATCGCTCGCGCGAAAACGCTGAAGAGGAAGCTGGTGAAATCGAGCAAGAAGAAAGATGAGAGCAATTATGGAACGAATGGGAAATTAAGTAAGAGAGAAATCGCTCGatacgatgacgatgatgacgatgaacAATTGTACTTGGACctggaaaaaaaagattgctttaagGACGAAGTTTACGTATACAGACAGGAACCATTGGATTTGGCCTCGAGTTCGGAACCAGAGGAATCAGAAGCGACCAGTCACAAGGATCTTTGCAAGAATTATCTCACCACAGATGGAAAAGGAAAATTTGCTGACAAGGTCTCTGACATAGATGACAAGAACGAAAAATGCAAGTCCAAGGCAGATGATGACATTATTGATAAAGAAAATCCCGAAAAAGAGCTCAGATTAAAAATGGACGCCATCATTCAAGCGAATTATTTGCTGGAGCACGAGAAAAATGATGTCGCTTCTAGCAAAGTTAAAGTTATGGAATTTATCAGTACCTCCTCCACTGCCGCCTCGATAAACGCAAAAAATGACGACGGTTCTATAAATAATTCGGCAGAAccaaaaaagaagaagaggaagaagcgAATTGACCAAGCCAAACAGTTGAAGGACCAAGGGGATCCTCAGGAGGATCAAGAAAATCCTCAGAAGGAACAAGAGAATCTTCAGAAAGACGAAGAGAATTCTGAGAAGACTTTCTGCTGTGTTGTATGTGACGCGCGTTTTAAAGGCAGCGGTGGTCTACGGAATCACTACAAGGTGGTGCACGGCGCCGGACCGCTGTACAAGTGCAACGATTGCGGCAAGGAATTCCCGCTTAAGGAACGCCTGAAGCTGCACGTGCGCACGCACACCGGTTTCAAGCCGTACAAGTGTCCGGAGTGCAACAAGAGCTTCGCGCGGGGCGGCCAGCTGGTGCAACATCGTCGTACTCACAGCCAGGACAGACCGTATCGTTGCAAACTGTGCTCCAACACCTTCACGTGCTCGGCCAATTTGGTGTTACACCTGAAGCGCCACAACGGCCAGAAGGATCACAAGTGTGATCTGTGCGGACGCGGCTTTGTACGTCGCGACGCCCTGAAGAAGCATCTGGAGTGCCTGCATCGCGACGTCAAGTCGTTCATCTGCGCGATCTGTAATAAGACTTTCAAGGGTCACCTACCACAGCACATGAGGACACACGCGCGCGATCGTCCGCACGGCTGTGCCACGTGTGGCCAGCGATTCGCTCAGAAATCTCAACTAACCGTGCACCAAAGGACCCATTCCGGCCAGCGACCGTTTCGCTGTCTAGTCTGCTGGCAAGCTTTCGCCCATTCGACCGCCTTGAAGCTACACACCCGACGTCACACTGGGGAACGGCCGTTCAAGTGTTCCGAGTGTAATGCCGGCTTCACTCAACTGCCACATTGGAAGaagcacatgaaatgcatacaTGGTAAAACTAATCCATACGGCTGTAAGCATTGCAAAAGCTTTTTTAGGATTAAGACCGACCTGGACAACCACGTGAAGACTTGTCACTCAGGGATGGAGACGGAAGATGACGAAGACGATTACGTCTTTACTGGACCGGCTGGCGATTCCGAGGTTGTCGAAAAGATCACTGTTACCGCGAGATATAACCGGCTGACAGTGGGAAAGATGCGATTGCTGCTGGCTGTATTGCTGAAGAGGATCAGTAAACAGGAACGGTTAAGCGAGCTCGGCTTCGGCAAACGTCTTATCGACGAGGTTCTTCAGGACTCTCTGGTGTCCGCTGGTAAGGAACCGGTGTATCCGGGGAACGGTATGTCCGAGCTTGAGGCTCTCACTCGGAATCTAGAAATCTTTCTAGAATGGACGGTGCCGAAGGAACACTTGGAGAAATTTCGTAAAATGAAAAAGTCGCCCGGAGAAATTCTGGAAACACTTACAGCTACGTAA
Protein Sequence: MQQQTISHNITGPEQSQEEVQLTELLPVKQSRIKENVFKNADATDALKALMSLSGDCDDSESFDLQEFNFYKNIEQFDHQSSKHRRMDGQRKRSMEKTRNGARNVDLNKEKNSEMAEKKVRDDRKIARAKTLKRKLVKSSKKKDESNYGTNGKLSKREIARYDDDDDDEQLYLDLEKKDCFKDEVYVYRQEPLDLASSSEPEESEATSHKDLCKNYLTTDGKGKFADKVSDIDDKNEKCKSKADDDIIDKENPEKELRLKMDAIIQANYLLEHEKNDVASSKVKVMEFISTSSTAASINAKNDDGSINNSAEPKKKKRKKRIDQAKQLKDQGDPQEDQENPQKEQENLQKDEENSEKTFCCVVCDARFKGSGGLRNHYKVVHGAGPLYKCNDCGKEFPLKERLKLHVRTHTGFKPYKCPECNKSFARGGQLVQHRRTHSQDRPYRCKLCSNTFTCSANLVLHLKRHNGQKDHKCDLCGRGFVRRDALKKHLECLHRDVKSFICAICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCSECNAGFTQLPHWKKHMKCIHGKTNPYGCKHCKSFFRIKTDLDNHVKTCHSGMETEDDEDDYVFTGPAGDSEVVEKITVTARYNRLTVGKMRLLLAVLLKRISKQERLSELGFGKRLIDEVLQDSLVSAGKEPVYPGNGMSELEALTRNLEIFLEWTVPKEHLEKFRKMKKSPGEILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01354805;
90% Identity: iTF_01354805;
80% Identity: -