Basic Information

Insect: Solenopsis invicta
Gene Symbol: -
Assembly: GCA_016802725.1
Location: NC:1933657-1938816[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2 1.7e+02 2.6 0.3 1 12 124 135 124 144 0.88

2 12 0.061 5.3 7.4 3.5 1 20 254 273 254 275 0.94

3 12 2.1e-05 0.0019 18.3 0.2 2 23 280 301 280 301 0.97

4 12 0.00096 0.084 13.0 5.6 1 23 312 334 312 334 0.97

5 12 0.01 0.88 9.8 0.3 1 23 353 374 353 374 0.81

6 12 0.00039 0.035 14.3 0.1 2 23 380 401 379 401 0.95

7 12 2.8e-05 0.0025 17.8 4.8 1 23 467 489 467 489 0.99

8 12 1.2e-06 0.00011 22.1 3.7 1 23 495 517 495 517 0.96

9 12 0.00014 0.013 15.6 4.1 1 23 523 545 523 545 0.97

10 12 8.6e-07 7.6e-05 22.6 0.8 1 23 551 573 551 573 0.98

11 12 1.8e-05 0.0016 18.5 0.2 1 23 577 599 577 599 0.99

12 12 0.00042 0.037 14.2 0.2 1 23 607 629 607 629 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2	1.7e+02	2.6	0.3	1	12	124	135	124	144	0.88
2	12	0.061	5.3	7.4	3.5	1	20	254	273	254	275	0.94
3	12	2.1e-05	0.0019	18.3	0.2	2	23	280	301	280	301	0.97
4	12	0.00096	0.084	13.0	5.6	1	23	312	334	312	334	0.97
5	12	0.01	0.88	9.8	0.3	1	23	353	374	353	374	0.81
6	12	0.00039	0.035	14.3	0.1	2	23	380	401	379	401	0.95
7	12	2.8e-05	0.0025	17.8	4.8	1	23	467	489	467	489	0.99
8	12	1.2e-06	0.00011	22.1	3.7	1	23	495	517	495	517	0.96
9	12	0.00014	0.013	15.6	4.1	1	23	523	545	523	545	0.97
10	12	8.6e-07	7.6e-05	22.6	0.8	1	23	551	573	551	573	0.98
11	12	1.8e-05	0.0016	18.5	0.2	1	23	577	599	577	599	0.99
12	12	0.00042	0.037	14.2	0.2	1	23	607	629	607	629	0.97

Sequence Information

Coding Sequence: ATGGGCGATCCACAGACGATACAAATGGATGAAAATGgaGAGATTAAAGTCATAGAAAAGATGGACACAGAAGAAACGCAACCAGATCAAAATTCTCTGGATTTCAAGATATCTGAAGGTCTCGCCGGCGACGGAGTGCAAAGAAGATTGCAGTCGCAGGGATTAGTGGCTATTCCCATACAAAATGTGGATCATAAGGCGGCGTTGATGGAGAAGAACATAATCGTGTTACCGGATAGCTCTGAGCTCATGGATGGTGAAACCGCGACCCTGATCGACGTGAATCGTGTAAACGAAGCGGAGGAGGTTGACGAGGCTGATCTTCTGCGTGTCAAGCGAGAGCTGTGCGAGTTTGAATCCGACGCCGTATACAGTTGTACCAGTTGCGAAATGAGCTTCAATTCTGTCCTAGAACACATCAAGCAGTTCCACGATGGCCAGGAGGTTTTGCTAGAAATGGCAGAACAGTTGAACGACATGGCAACGACGAGTCCGGCATCGGCTGTATCTGAAAGCTCAGAAAATGTGCCGAGCGCACGACCACGGCAGGCGTTGAATACGCTGCGCACGGAAGAATGTGTGGATAACGACGGTAGGCTCTATACCAGAAAAGTGGTGCAAATTGAAAGATTCTGGGACCGTACTCCGATTCAGGTTACGACGTCGCAAGCGAAGGCACCGATGATCGAAAAGTTCTTTTCGAACGTGGAGGGAGTTAAGGTACGAGAGAAACGCCTGGCGAATGCATCGGTGCGAATGTACAAGTGCAATCAGTGCCTGCAGCAGTTCTCCAAGTTGGGAAACTATCGCGTGCACGCCTGTCATCGTGGCAATAACCGTTGCGAGCAGTGCGACCAAAGTTTCGCAACCCCTAGGGCCTTGCAGCTCCACGTAAAGGTGCACGAAATCGAGGCCGATCCGAGCCAGAAGACGTTTATCTGCACTACGTGCGGTACTGAATTTTGCTCCCACAAAAGCCTACGATTGCACTCGAGGATGCACGCGCCAGTGAGAGCCAGACATGTCGATGCACCCGAGGGCACCCCTAATGCAACTTTTACTTGCCCCGAATGTGGCAAAACGCTGTCCGAGTCGTACAAAGACGCGCACATGACACTGCATACGGGTGACTCTGTGACGTGCACCGTTTGCAATCGGAAGTTTGATTCTGCGGACAGTCTAGCGATGCACGCGGCAGTACACGTTGAACTGGTACCTCCGCAATCGCCTACTCCTTCAGTCTCATCGTCATCCACTGTGGAGACAACGACGACATCGGCGACGTCAACGGTAACATCAGCGACGACGGTGACATCGACGACCGCCACGACATCAACAACgacggtaacgacgacgacggcgacggtggcaACGGCGGAATCCGACAGTCAGAAGCCTTATCAGTGCCAGCATTGCGGACGCAGGTTTACCAGGCCGCACGAGAAAGTCAAGCACGAGCGGATACACACTGGAGAGAAGCCGCATGCCTGTGAGGTTTGCGGCAAGACTTTTCGCGTGTCTTACTGCCTGACCCTTCACATGCGCACCCACACGGGCGTCCGGCCGTATGCCTGTCAGCACTGCGGCAAGCGTTTTAAAGCGTCTTCGGTTTACAATCATCACCTACTAACGCACGGCGAAGAACGCGCCTATACGTGTCCATATTGTCCGAAGACGTTCAAGACGCGAGTGCAGCTGGCCGGTCATAAAAACAGTCACACGAAGCCGTTCCGATGTACCGAGTGTTCACGGCCGTTTGCATCGCTCTACGCTGTCCGTGCGCACATTCAGACCCATAAGAAGGACAACAATCTTAAGTTCAGCTGCTACGTATGCGGCGCGTCGTACGGTCGAGCGTTCGCTCTCAAGGACCACCTGAAACAGCACGGTCAGGATGTACTGGCGCTACCGGAGCCAGCGCGTGAAGAAGAGGTACACGAGAACTTCCTTCTTGGCGAGGAGGAGGCCGAAGAAGATGAATTCGCAGTTCcgacgccgccgccaccgccgttaCTTCCTGTCGTTGCGCGTTCCTCCGGTGGCGTGAATGACACCGACTAG
Protein Sequence: MGDPQTIQMDENGEIKVIEKMDTEETQPDQNSLDFKISEGLAGDGVQRRLQSQGLVAIPIQNVDHKAALMEKNIIVLPDSSELMDGETATLIDVNRVNEAEEVDEADLLRVKRELCEFESDAVYSCTSCEMSFNSVLEHIKQFHDGQEVLLEMAEQLNDMATTSPASAVSESSENVPSARPRQALNTLRTEECVDNDGRLYTRKVVQIERFWDRTPIQVTTSQAKAPMIEKFFSNVEGVKVREKRLANASVRMYKCNQCLQQFSKLGNYRVHACHRGNNRCEQCDQSFATPRALQLHVKVHEIEADPSQKTFICTTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKDAHMTLHTGDSVTCTVCNRKFDSADSLAMHAAVHVELVPPQSPTPSVSSSSTVETTTTSATSTVTSATTVTSTTATTSTTTVTTTTATVATAESDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHGQDVLALPEPAREEEVHENFLLGEEEAEEDEFAVPTPPPPPLLPVVARSSGGVNDTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126922;
90% Identity: iTF_01354792;
80% Identity: -