Sfug008408.1
Basic Information
- Insect
- Solenopsis fugax
- Gene Symbol
- -
- Assembly
- GCA_003595255.1
- Location
- QKQZ01035218.1:3942-8969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0059 0.89 10.9 1.0 3 21 8 27 6 28 0.86 2 14 0.36 54 5.3 0.3 2 23 34 57 33 57 0.89 3 14 3.1 4.7e+02 2.4 0.3 1 12 234 245 234 254 0.88 4 14 0.096 14 7.1 3.5 1 20 365 384 365 386 0.94 5 14 3.3e-05 0.005 18.0 0.2 2 23 391 412 391 412 0.97 6 14 0.0015 0.23 12.8 5.6 1 23 423 445 423 445 0.97 7 14 0.016 2.4 9.6 0.3 1 23 464 485 464 485 0.81 8 14 0.00062 0.094 14.0 0.1 2 23 491 512 490 512 0.95 9 14 4.5e-05 0.0068 17.6 4.8 1 23 579 601 579 601 0.99 10 14 2e-06 0.00029 21.9 3.7 1 23 607 629 607 629 0.96 11 14 0.00023 0.034 15.4 4.1 1 23 635 657 635 657 0.97 12 14 1.4e-06 0.0002 22.4 0.8 1 23 663 685 663 685 0.98 13 14 2.8e-05 0.0043 18.2 0.2 1 23 689 711 689 711 0.99 14 14 0.00067 0.1 13.9 0.2 1 23 719 741 719 741 0.97
Sequence Information
- Coding Sequence
- atggGCACGCTGAACCTTACCTGTCCGATGTGCTGCGGCGAAACCTTCAACAATCCTCAGTCCCTCAAGCATCACTTGTTGAGCATGACGAACAATCTCTATTGCCCCGGCTGCTCGCAGCGTTCCGACTCCGTGACGGCGCTCATTCAGCACCTGGATACGTGCGAGCACGACTTGAGGTGCAGAATGAAGCCGGAGTTGCTCGTGGAAAAGCTGAGGAAAGGTGGAAGGGAGTCCGAGATTAAAATGGATCTGTTAATGGATATAAAGGGGCAGCAGATCAATCGGAGCTTCCTCGCAACCATGGGCAATAATGGAGTTGTCATAATGGGCGATCCGCAGACGATACAAATGGATGAAAATGGAGAGATTAAAGTCGTAGAAAAGATGGACACAGAAGAAATGCAACCAGATCAAAATTCTCTGGATTTCAAGATATCCGAAGGTCTCGCCAACGACGGAGTGCAAAGAAGATTGCAGTCGTCGCAGGGATTAGTGGCTATCCCCATACAAAATGTGGATCACAAGGCGGCGTTGATGGAGAAGAACATAATCGTGTTACCAGATAGTTCTGAGCTCATGGACGGTGAGACCGCGACCCTGATCGACGTAAATCGTGTAAACGAGGGGGAGGAGGTTGACGAGGCTGATCTTCTGCGTGTCAAGCGAGAGTTGTGCGAGTTCGAGTCCGACGCCGTATACAGTTGTACCAGTTGCGAAATGAGCTTCAATTCTGTCCTAGAGCACATCAAGCAGTTCCATGATGGCCAGGAGGTTTTGTTAGAGATGGCGGAACAATTAAACGACGTGGCAACGACGAGTCCGGCATCAGCGATATCTGAAAACTCGGAAAATGTGGTGAACTCACGGCCACGGCAGGCGTTGAACACTCTGCGCACGGAAGAATGTGTGGATAACGATGGTAGGCTCTATACCAGAAAAGTGGTGCAAATTGAGAGATTCTGGGACCGTACTCCGATTCAGGTCACGACGTCGCAATCAGCGAAAGCACCGATGATCGAAAAGTTCTTTTCGAACGTGGAGGGTGTTAAGGTACGAGAGAAACGCCTGGCGACTGCATCGGTGCGAATGTACAAGTGCAATCAGTGCCTGCAGCAGTTCTCCAAGTTGGGAAACTATCGCGTGCACGCCTGTCATCGCGGCAATAATCGTTGCGAGCAGTGCGATCAAAGTTTCGCAACCCCTAGGGCCTTGCAGCTTCACGTGAAGGTGCACGAAATCGAAGCCGATCCGAGCCAGAAGACGTTTATCTGCACTACGTGCGGTACCGAATTTTGCTCCCACAAAAGTCTGCGATTGCACTCGAGGATGCACGCGCCAGTGAGAGCCAGACATGTCGATGCACCCGAGGGCACCCCTAACGCAACTTTCACTTGCCCCGAATGCGGCAAAACGCTGTCCGAGTCATACAAAGATGCGCACATGACGCTGCATACGGGTGACTCGGTGACGTGCACCGTTTGCAATCGGAAGTTTGATTCTGCGGACAGTCTAGCAATGCACGCGGCGGTGCACGTTGACCTGGTACCTCCGCAATCGCCTACTCCTTCAGTCTCATCTTCATCCGCTGTGGAGACAACGACATCGGCGACAATATCAACGGTAACATCAGCAATGACGGCGACATCGACGATCGCCACGACATCAACAACGACGgtaacgacgacgacggcaacGGTGGCAACGGCGGAATCCGGCGACAGCCAGAAGCCCTATCAGTGCCAGCATTGCGGACGCAGGTTTACCAGACCGCACGAGAAAGTCAAACACGAGCGGATACACACTGGGGAGAAGCCGCATGCCTGTGAGGTTTGCGGCAAGACTTTCCGCGTGTCTTACTGCCTGACCCTTCACATGCGCACGCACACGGGCGTCCGGCCGTACGCCTGTCAGCACTGCGGCAAACGCTTCAAAGCGTCCTCGGTCTACAATCATCACCTGCTAACGCACGGCGAAGAACGCGCCTATACGTGTCCGTATTGTCCGAAGACGTTCAAGACGCGGGTCCAGCTGGCCGGTCACAAAAACAGTCACACGAAGCCGTTTCGGTGTACTGAGTGTTCACGGCCGTTCGCATCGCTCTACGCAGTTCGCGCGCACATCCAGACCCATAAGAAGGACAACAATCTTAAGTTCAGTTGCTATGTATGCGGCGCATCGTACGGTCGAGCGTTCGCCCTCAAGGACCATCTGAAGCAGCACGGCCAGGATGTACTAGCGCTACCGGAGCCAGCGCGGGAGGAAGAGGTACACGAGAACTTCCTTCTTGGCGAGGAGGAGGCCGAAGAAGATGAATTCGCAATCCCgacgccaccgccgccgccatcACTCCCCGTTGCGTGCTCCTCCGGCGGCGTGAACGACACCGACTAG
- Protein Sequence
- MGTLNLTCPMCCGETFNNPQSLKHHLLSMTNNLYCPGCSQRSDSVTALIQHLDTCEHDLRCRMKPELLVEKLRKGGRESEIKMDLLMDIKGQQINRSFLATMGNNGVVIMGDPQTIQMDENGEIKVVEKMDTEEMQPDQNSLDFKISEGLANDGVQRRLQSSQGLVAIPIQNVDHKAALMEKNIIVLPDSSELMDGETATLIDVNRVNEGEEVDEADLLRVKRELCEFESDAVYSCTSCEMSFNSVLEHIKQFHDGQEVLLEMAEQLNDVATTSPASAISENSENVVNSRPRQALNTLRTEECVDNDGRLYTRKVVQIERFWDRTPIQVTTSQSAKAPMIEKFFSNVEGVKVREKRLATASVRMYKCNQCLQQFSKLGNYRVHACHRGNNRCEQCDQSFATPRALQLHVKVHEIEADPSQKTFICTTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKDAHMTLHTGDSVTCTVCNRKFDSADSLAMHAAVHVDLVPPQSPTPSVSSSSAVETTTSATISTVTSAMTATSTIATTSTTTVTTTTATVATAESGDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHGQDVLALPEPAREEEVHENFLLGEEEAEEDEFAIPTPPPPPSLPVACSSGGVNDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126922;
- 90% Identity
- iTF_01355629;
- 80% Identity
- -