Basic Information

Insect: Solenopsis invicta
Gene Symbol: -
Assembly: GCA_016802725.1
Location: NC:15686826-15694829[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.29 25 5.2 6.7 2 23 364 386 363 386 0.96

2 18 0.029 2.5 8.4 2.2 1 23 435 457 435 457 0.97

3 18 0.86 76 3.7 1.1 1 23 506 528 506 528 0.97

4 18 0.028 2.5 8.4 0.2 1 20 578 597 578 599 0.93

5 18 0.0097 0.85 9.9 1.3 1 23 639 661 639 661 0.97

6 18 3.9e-05 0.0034 17.4 0.2 1 23 712 734 712 734 0.96

7 18 0.00043 0.038 14.1 0.1 1 23 740 762 740 762 0.97

8 18 3.9e-05 0.0034 17.4 0.5 1 23 803 826 803 826 0.97

9 18 0.0002 0.017 15.2 0.6 1 23 832 855 832 855 0.96

10 18 1e-05 0.0009 19.2 0.7 2 23 863 885 862 885 0.97

11 18 0.00011 0.0099 16.0 0.0 1 23 893 915 893 915 0.93

12 18 0.057 5 7.5 0.3 1 20 975 994 975 994 0.97

13 18 0.00043 0.038 14.1 0.1 2 23 1014 1035 1013 1035 0.97

14 18 9.3e-06 0.00082 19.4 1.2 1 23 1048 1070 1048 1070 0.98

15 18 8.3e-05 0.0073 16.4 3.1 1 23 1092 1115 1092 1115 0.94

16 18 0.00099 0.087 13.0 1.6 2 23 1176 1198 1175 1198 0.96

17 18 0.00046 0.041 14.0 1.0 1 23 1220 1243 1220 1243 0.93

18 18 0.00094 0.082 13.1 0.2 2 23 1336 1358 1336 1358 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.29	25	5.2	6.7	2	23	364	386	363	386	0.96
2	18	0.029	2.5	8.4	2.2	1	23	435	457	435	457	0.97
3	18	0.86	76	3.7	1.1	1	23	506	528	506	528	0.97
4	18	0.028	2.5	8.4	0.2	1	20	578	597	578	599	0.93
5	18	0.0097	0.85	9.9	1.3	1	23	639	661	639	661	0.97
6	18	3.9e-05	0.0034	17.4	0.2	1	23	712	734	712	734	0.96
7	18	0.00043	0.038	14.1	0.1	1	23	740	762	740	762	0.97
8	18	3.9e-05	0.0034	17.4	0.5	1	23	803	826	803	826	0.97
9	18	0.0002	0.017	15.2	0.6	1	23	832	855	832	855	0.96
10	18	1e-05	0.0009	19.2	0.7	2	23	863	885	862	885	0.97
11	18	0.00011	0.0099	16.0	0.0	1	23	893	915	893	915	0.93
12	18	0.057	5	7.5	0.3	1	20	975	994	975	994	0.97
13	18	0.00043	0.038	14.1	0.1	2	23	1014	1035	1013	1035	0.97
14	18	9.3e-06	0.00082	19.4	1.2	1	23	1048	1070	1048	1070	0.98
15	18	8.3e-05	0.0073	16.4	3.1	1	23	1092	1115	1092	1115	0.94
16	18	0.00099	0.087	13.0	1.6	2	23	1176	1198	1175	1198	0.96
17	18	0.00046	0.041	14.0	1.0	1	23	1220	1243	1220	1243	0.93
18	18	0.00094	0.082	13.1	0.2	2	23	1336	1358	1336	1358	0.96

Sequence Information

Coding Sequence: ATGGACGAGGACGTGATCGAGATCGAGAGTGTGGAGAATGTCTGCAGACTGTGCCTTTCCACGGATAGGCCTAGGTCCTCGGTGTTCGCAACACAAGACGATGAGAAGGAAGGCTCGTCTGGTGTGCCGTTGGCCACCAAGATCCAGACCTGTCTATCCATCCAGattttaacaACTGATAAATTGTCCACATTGATATGCGCAAATTGCGTGAAAAACGTCAATCAATGGCATACTTACAAGGAGTCATGTCTGCGTTCTCAAGACAAACTACAAGAATGGCTGGCAAATCAAATACAATCAAACCCTATGGTTATAACAATTAAGGATGAACCAATGGATTTTGATTATGAAGATAATGTAGAAATTATATCTGAGATCACCAATAATTTGGAACAATCaTTACCAGCTCAGGAAGTAGAAAATAATGACTCTAATGATGACAAAGATGACAATGTGCAAGATGTAACAGCTAACAACGATATGCAGGATGTAACAGATAACAACGATGTGCAAGATGTAATGGATAACAGCGATATGCAAGATGTAACAGATAACAGCGATATGCAAGATGTAACAGATAACAGCGATATGCAAGATGTAACAGGTAACAACGATGTGCAAGATGTAATAAGTAACAGCGATGTGCAAGATGTAACAGATAATAATGACGTGCAAGATGTAACAGATAATAATGACGTGCAAGATGTAACAGATAGTAATGACGTGCAAGATGTAACTGATAATGATGCTAACGATACTAATGAAAATTCTGAATCAATTCCACTTGTTGAGACTGTAGAAGTGGAAAAGGAGATTGATAAAGAAGAAAGTCAAACGAATCAGCAGGATTCCATTGCTCTGTGTTCTATTAAGAGCGAACCGCAAGATGATGATACCGATTGTACCGTAGAATTAGAATCCACGAATAGCAATGAGTTACTGTTGAATTCCATGGCAGATGAGACAGAGGACATAGTCATGGAAGCCGATTCCACACAGAAGTCCAACTTAGCTGGCGCACCGCCTAAAAAGAAGTTGAGACGTGGGCCTCACACTCACTTCAGAGGAACGCGTGTCTTTAAGCAAAAATGCACGCATTGTCAGATATTTCTACATTCTAAGTATTCGTTTATGAAGCACATGGAAAGGTTTCACAGTAAAGAAAATGGTATCGGGAATTTAGAGTCACAGAATGATGACGAAGAGATGGTTGAAGATTTGGAAGATGAACTTGTCAGCATGGAAAAGGACTCACCACTAACGCAAGTCCAACAGGACATTATTAGTCAACTAAAGACTTTCTCTTGCTACTCTTGTGAACAGACTTTTAACGATCGACGCAGCACCCTTTCTCACATACGTCAACATTTGCCGGATTTGAGGCCGTATACATGTATCGCCTGTCTGACAGAATTTCCAGATCGATCGATGTATCAATTACATTGCGGAGCTTCCTTTGAATGTGCTATGAAGATCGCCCTAGTCGTACCAAAAATCGGTAATGAGCGATACTTTACATGCAACATGTGTTTGCGCTCAATGCAGGGGAGGAAGGAGTTGCTCAGTCACTTGTCGAAACATTCTGACAAGCAATATGAGGAGATGATGGGGCCGGCGCGAGCCCCGCCCAAACTGAAGCCGATGGCGCCGTTGCCATCCGGGAAAAGCAGCGTGCCCAATAAAAATGTTGATGGACTGCCTTACAAAAACGGCGATCCAATGCATAATCATGTCTGCGATCTGTGTGGCATGATCTACCGATATCGGCCCAATATGCTTAAACACAAGGAGATGTGTAAGCAGTTGGATCCGCAAAGCAGAACATTATATAAATGCGTACATTGTTACATGACGTTTCTTGTATTTAATAAGTTCCATTATCACTTTACATCAGAGCATAAGAAGAAGGATTTTATTTGTGCCGTGTGTTTTTCCAAGTTCCGATCGCCTAGCGATTTCCTGATTCATCACGAGACTCATCGCGAAGCAGTGCAAAGTAATCTGCAAAGTAATCAGCAAATGCAGTATGACGATACTTCGCAGAATACAGTTCAGACACCATTGAAGGAACGTAATGCTTACGAAACAAATACCAAGTCAAGAATGAGTTCGCGAATATCAAGTCAGAAATTCAGTTGTCCGCTCTGCCCCCAGGAGTTCTCTACAAAGGCCGAGTTGAATGAGCATCGGACTCTCCatctaaaagtaaaaatatactCATGCGCTATTTGCCGTAGTATGTTCAGCAGCGCCGGTGCCTTGGAGATTCACATGAAGGATCACGGTATTGAGGACCCGAACGAAAGAAACGCCAATGTCTCTTGCGTGGAATATGGCAACTTAGAAGAGGACGTTAGACTCGATATGAATGCTAGTGCTGTTTCTGATCCTGGTACTCAAATTCACAAGTGTGGCGAGTGCGGTAAGGTGATGTCAAGTTACGCTAATCTTCGACGACATGTCAAAATAGCTCACCGAAATTCTAAGATCTATGATTGTGTCGAGTGTTCGCGAATGTTCATGCGTAAAGATCTATACGAAAATCACATGATGGTCAAGCACAACAGCAAGAAGACAATGATACAATGTCCGCAGTGCCCTAAGAGTTTTGTCTTCCAATCAAATTTCTCTTATCACTTCCGTACTGCTCATCTCGAAAAATCACAGACTGGTTATGCCTGCGATATCTGCGGCAAAGTCTTTGTCGAAGAAGCATCTTTAAAAATACACAGGGGTTGGCATAATCGCGCCAACTCGCGTCTGAGTACTCGGTTTATACTGGGCAATCAGAAGTCACCTAAAAATACGCAGAAGGTACCGAGCAATGTTGAATCTGGTGAGATTTCAGAACGGCCGGCGAGAGCACGGAAATCATTCCCTAATCCTCCACTTCAATCGCCAGAGAGGACATTAGGAAATTTCCAATGTCAAGTATGCAATGATAAATTTAACGACGTCACAGAGTTGAGAACCCATCTGTGGGACGTCCACTGCGCCCGCAACAAAGCAGAAAAAAGTTTCTCTAACGACGAGCTTCAATGCGAACTCTGCACCAATATTTTCCCTGATCAAGAAACTCTAGCTTCTCATATGCGATGGCACAAGGCCAATCCGATTCTCAGTGACATACAAAAGACATTCTCCTGCGACGTATGCGGCAAATCTTATAGTTCAAAGAAGGTTCTATGGAAGCACAAGAGGCTTCACAAGGCTACCGTTGTAGCTTCGTTCAAATTCCAATCTTTAGCTAGAAAACCGATGGCTACACAATTCTTATGCAACTTCTGCCGCAAAGTTTTTTCTAGCAGTCAATCTCTGCAGCGGCACAAACTCACCTTCCACAGTGAGCTGCAGAATCCACAGCGCCCGCACCAACAACAGCTGTACAACAATCGAGCATCGTTTGAGGATGAGCCGAGGACAAAGCGTACGAAATATGACCATGTCATCGAAAATGACAATTCACAGGCTAAGCTTTCTCCTTTCGCTATGGACTTTGCTGGTGAAAGAAGGAAACCGGTCATGTGTCACGTTTGCAAGAAAATGTTCCCTAACATGAGCGTTCTGTACAAGCACAAGCAAACCGTCCACAAGGCCCGTGGAAATAAAGACTCGATACCCGAATGCATACCGATGTCCACCGATGACGGCAAATTTTCGTGCAACATCTGTTTCAAGGAATTCCCTGGTTTGTCGAATCTGCGACAGCATTTCACGATCAAGCACAAGAAGGCAGCACAGTCCGAAGCTAGCAACGCATCGAACAATGACAGATTGTCGCTTCCGACACCCGAACGACCAAGAGAAGTTCCTACCTACGAAGTGGCCTACAATAACGTGATGTACAGTTGCAAACTGTGCAAGCAGTGCCATGTCTTCAATAAGGAATCCATCATAACCCATATTACTAATGTTCACAATACGGTGTACCAGGCCGATAGCAAGACGTTCCATAGAGAGGTCAATCTGAGCACTTACGTAGTGAAAGACGCAATCGGAGCTACTTGCCCGGAATGTGACGTCAAATATCCCAACAACAGAGCTCTGAAGATACACTATATAAAGTTCCATGAGAATGCCGATTAA
Protein Sequence: MDEDVIEIESVENVCRLCLSTDRPRSSVFATQDDEKEGSSGVPLATKIQTCLSIQILTTDKLSTLICANCVKNVNQWHTYKESCLRSQDKLQEWLANQIQSNPMVITIKDEPMDFDYEDNVEIISEITNNLEQSLPAQEVENNDSNDDKDDNVQDVTANNDMQDVTDNNDVQDVMDNSDMQDVTDNSDMQDVTDNSDMQDVTGNNDVQDVISNSDVQDVTDNNDVQDVTDNNDVQDVTDSNDVQDVTDNDANDTNENSESIPLVETVEVEKEIDKEESQTNQQDSIALCSIKSEPQDDDTDCTVELESTNSNELLLNSMADETEDIVMEADSTQKSNLAGAPPKKKLRRGPHTHFRGTRVFKQKCTHCQIFLHSKYSFMKHMERFHSKENGIGNLESQNDDEEMVEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKIGNERYFTCNMCLRSMQGRKELLSHLSKHSDKQYEEMMGPARAPPKLKPMAPLPSGKSSVPNKNVDGLPYKNGDPMHNHVCDLCGMIYRYRPNMLKHKEMCKQLDPQSRTLYKCVHCYMTFLVFNKFHYHFTSEHKKKDFICAVCFSKFRSPSDFLIHHETHREAVQSNLQSNQQMQYDDTSQNTVQTPLKERNAYETNTKSRMSSRISSQKFSCPLCPQEFSTKAELNEHRTLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNERNANVSCVEYGNLEEDVRLDMNASAVSDPGTQIHKCGECGKVMSSYANLRRHVKIAHRNSKIYDCVECSRMFMRKDLYENHMMVKHNSKKTMIQCPQCPKSFVFQSNFSYHFRTAHLEKSQTGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGNQKSPKNTQKVPSNVESGEISERPARARKSFPNPPLQSPERTLGNFQCQVCNDKFNDVTELRTHLWDVHCARNKAEKSFSNDELQCELCTNIFPDQETLASHMRWHKANPILSDIQKTFSCDVCGKSYSSKKVLWKHKRLHKATVVASFKFQSLARKPMATQFLCNFCRKVFSSSQSLQRHKLTFHSELQNPQRPHQQQLYNNRASFEDEPRTKRTKYDHVIENDNSQAKLSPFAMDFAGERRKPVMCHVCKKMFPNMSVLYKHKQTVHKARGNKDSIPECIPMSTDDGKFSCNICFKEFPGLSNLRQHFTIKHKKAAQSEASNASNNDRLSLPTPERPREVPTYEVAYNNVMYSCKLCKQCHVFNKESIITHITNVHNTVYQADSKTFHREVNLSTYVVKDAIGATCPECDVKYPNNRALKIHYIKFHENAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01354795;
90% Identity: iTF_01354795;
80% Identity: -