Basic Information

Insect: Solenopsis invicta
Gene Symbol: pita
Assembly: GCA_016802725.1
Location: NC:14474243-14477975[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.5e-05 0.0048 16.9 1.6 2 23 302 323 301 323 0.97

2 11 0.00018 0.016 15.3 1.3 1 20 331 350 331 354 0.91

3 11 0.00064 0.056 13.6 2.7 1 23 396 418 396 418 0.98

4 11 4.2e-07 3.7e-05 23.6 1.5 2 23 473 494 472 494 0.97

5 11 5.3e-05 0.0047 17.0 1.1 1 23 499 522 499 522 0.95

6 11 7.5e-05 0.0066 16.5 0.2 1 23 560 582 560 582 0.97

7 11 7.2e-07 6.4e-05 22.9 1.7 1 23 592 614 592 614 0.96

8 11 1.6e-06 0.00014 21.7 1.2 1 23 620 642 620 642 0.99

9 11 8.3e-06 0.00073 19.5 0.2 1 23 648 670 648 670 0.98

10 11 3.4e-05 0.003 17.6 4.5 1 23 676 698 676 698 0.98

11 11 0.00095 0.083 13.1 0.5 1 21 704 724 704 725 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.5e-05	0.0048	16.9	1.6	2	23	302	323	301	323	0.97
2	11	0.00018	0.016	15.3	1.3	1	20	331	350	331	354	0.91
3	11	0.00064	0.056	13.6	2.7	1	23	396	418	396	418	0.98
4	11	4.2e-07	3.7e-05	23.6	1.5	2	23	473	494	472	494	0.97
5	11	5.3e-05	0.0047	17.0	1.1	1	23	499	522	499	522	0.95
6	11	7.5e-05	0.0066	16.5	0.2	1	23	560	582	560	582	0.97
7	11	7.2e-07	6.4e-05	22.9	1.7	1	23	592	614	592	614	0.96
8	11	1.6e-06	0.00014	21.7	1.2	1	23	620	642	620	642	0.99
9	11	8.3e-06	0.00073	19.5	0.2	1	23	648	670	648	670	0.98
10	11	3.4e-05	0.003	17.6	4.5	1	23	676	698	676	698	0.98
11	11	0.00095	0.083	13.1	0.5	1	21	704	724	704	725	0.94

Sequence Information

Coding Sequence: ATGGCAATCTCGAATAATGACGCGATGGTGAGTAGCATGGCACACACGGAGCGGCTCGTGGGCGACGAATGCCGCATCTGTCTCAAGTCCTGCACAGAGGTGTGCCAGCTCTTTCGCGACGACGGCGGAATACCGGAGAAGCTGATGGCTATCGCCGCCGTGCAGGTGGAGCAAGGAGACGGTCTGCCAGCTGCCATCTGTTTATCTTGCAATCATCTGCTGGATGTATCCTATGACTTCCGATGTCAAATTCAGAATGCCGACGTCAGACTACGTCAGATGTTGAAATTGCAGGTTCCATCCATGTTACATGACTCAAAGGATGCTATGATAATTAAGGATATTGCGGATGCTGTATCCGACGTAGTGTCTTGTAAAAAGAATAATCATGTTATAGAGCAGGATATTTATTCATCTCACGATATTGTTACTTTTGATAATACTGCAGTTCAGCCTAATATAATTAACGATGAATCTCATATAAATCACAAGTTTATGCAAAAGCCAGAAGAAAATATAGAACTAATTGAAAAAGTTATACCGTACACTACACTTGAAGAGAATGTACATAATGTTGAAATGATGGAAGTATTATGTCACGAAACGCATATGGAGGATGCAATTGCTGATCATTCAGATCAATTGTCCAGTTCAACAACAGAAGATAAATGCAAGCAGGAACAGTTAATGCCTGAAGATAATGAGACATCAGGAAGTGTAATGGATGAAAGTAGggaaaacataaaaattgaaattaagaacGATGTGCTTTTGGAACATTTCACTGATCACAATGTTTCAAAGGAGATAACAATGTTAGGTACGGACAATCAAGATACAAAAGGCATTGCAAACTGCAGCGATGATGAGGAGAAGCCACTCATAAGCAGGACAACCAGACAGAAGTGCTTGCATTGTATTAAATCGTTTGCGACAAAGGTAGCATTGCAGCGACACATGAATGTGCACAAACACAAAACAAAGCTGCGTTATGTGTGCGTCGTGTGCGATAAGCAATTTTCGAACATTGACAAATTAAAAAGCCACATGCCTACTTGTCATGAAACTCAGATGTCGGATAGTAAAGCATTGCAGGATGATAAGAAGGCGAATAAAGTGTCGGCAAAAGTTACTAGAAGTGGCAATGTGATAGACAGCACGAGAGAGGAGAAGAAAAACTTCAAGTTTACATGTAAAGTCTGCTCGAAGCAATTCATATATCAAAAGTCTTTTTTGTCTCATGCTAAAAGTCATGCCGAATACAATGTGGATATGTCGGACGACGTACTTGATCAATCAGCGAATAAGATTACGAGCGAGCAGAAGGAAAGGACGCCGACGTTTAAGGAAAACGAATctgaggaagaagaggaagaggaggacgaTGACGACAGTGATTTACCGATTGAAAGTCTACAGTGTACTCAGTGCGGGAAACTTTTCGCTACGAAAAGGAATCTGAAGAGGCACATCTCGACACACAGCGGCTTGAAATTCAATTGTTCGACATGCGGTAAAGGATTTTCGAGGATCGACAAATTGAAGGATCATGAACAATCAAAACACAAAGAGGAAATATTTGGTAATACTGACGACGAGATTGATGACGAAGAAGATAATGAGAGCAAGATCAACGAGAATTCCGAAAACCGAAAGAAGGACCGACACAACAGGCCACACAAATGCGCGCTCTGTCCAAAAGCGTTTGCACAGGCTCAATCTCTGGCAAATCATGTAGAAAGACATAAACGAGTGAAGGATACGCAGAAGCGGTTTCTCTGCGAAAAATGTAGTAAATGCTTTGCTCAGAGTGGCTCGTTGGTGGCACATATGCGCACTCACACTGGCATCAAGCCATACGTATGCAATGTGTGCAGTCGTGCCTTCACCAAGAGCACGTACTTGCAGCTACACCTGAGAACTCACAGCGGTGAGAAACCGTATATCTGCCAGTACTGCAGTAGAGCGTTTGCTCGGGCCAATACTCTGGCGCGGCACATCACTATGCACACTGGTGAGGCCAAATATCATTGCAACATTTGTACCAAGTCCTTCCGGCGATTGACCTCACTAAACGAGCACACGTATACACATACTGGCCAACGGCCGTACGCGTGTAAGCTCTGCACTAAGAGATACAATAACGCTGGCTCGTTATATGCCCACACAAAGAAGTGCAAAGCACAACAGCTTTCCAGTTCGACAACGACTGCGTTTGCGGTATCCACGGCGGACAATACTCCCCAGCAAAACGACGCGTCCATGCCCCAGCTATTGATATATTCCCAGAGGAAGCTGGTAGAAGAGGCGACTGTTGCTCAAGTTGTATCTACTCCGCAATACATGGTAACAAATGTGCACAATCAAAAAACAGTGCCCGCCAATGTAATCCAACCGTTCACGGTAGAGGACCCAAATGTGTATAATTCAAAACAGTTTAAGAACTCGTATTATGCTATTTATCCAAACATGTAA
Protein Sequence: MAISNNDAMVSSMAHTERLVGDECRICLKSCTEVCQLFRDDGGIPEKLMAIAAVQVEQGDGLPAAICLSCNHLLDVSYDFRCQIQNADVRLRQMLKLQVPSMLHDSKDAMIIKDIADAVSDVVSCKKNNHVIEQDIYSSHDIVTFDNTAVQPNIINDESHINHKFMQKPEENIELIEKVIPYTTLEENVHNVEMMEVLCHETHMEDAIADHSDQLSSSTTEDKCKQEQLMPEDNETSGSVMDESRENIKIEIKNDVLLEHFTDHNVSKEITMLGTDNQDTKGIANCSDDEEKPLISRTTRQKCLHCIKSFATKVALQRHMNVHKHKTKLRYVCVVCDKQFSNIDKLKSHMPTCHETQMSDSKALQDDKKANKVSAKVTRSGNVIDSTREEKKNFKFTCKVCSKQFIYQKSFLSHAKSHAEYNVDMSDDVLDQSANKITSEQKERTPTFKENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRIDKLKDHEQSKHKEEIFGNTDDEIDDEEDNESKINENSENRKKDRHNRPHKCALCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSSSTTTAFAVSTADNTPQQNDASMPQLLIYSQRKLVEEATVAQVVSTPQYMVTNVHNQKTVPANVIQPFTVEDPNVYNSKQFKNSYYAIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01476429;
90% Identity: iTF_01354784;
80% Identity: -