Sinv004673.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- -
- Assembly
- GCA_016802725.1
- Location
- NC:28119184-28126515[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.014 1.3 9.3 3.1 1 23 389 411 389 411 0.97 2 19 0.012 1 9.6 0.5 2 23 448 469 447 469 0.96 3 19 0.00029 0.025 14.7 1.3 1 23 536 558 536 558 0.97 4 19 0.00088 0.078 13.1 0.8 2 23 562 583 561 583 0.96 5 19 3.3e-06 0.00029 20.8 0.8 2 23 633 655 632 655 0.97 6 19 0.0094 0.83 9.9 2.9 1 23 661 683 661 683 0.95 7 19 0.00047 0.041 14.0 0.7 1 20 689 708 689 713 0.94 8 19 0.00011 0.0094 16.0 1.1 1 23 787 809 787 809 0.97 9 19 0.00015 0.013 15.6 5.0 1 23 873 895 873 895 0.97 10 19 0.00012 0.011 15.8 0.7 1 20 900 919 900 921 0.94 11 19 0.035 3.1 8.1 0.3 2 23 932 953 932 953 0.97 12 19 2.1e-05 0.0019 18.2 0.6 2 23 992 1013 991 1013 0.97 13 19 1.9e-05 0.0017 18.4 1.6 1 23 1018 1040 1018 1040 0.95 14 19 0.00083 0.073 13.2 1.7 1 20 1046 1065 1046 1068 0.93 15 19 3.4e-06 0.0003 20.7 0.4 1 23 1084 1106 1084 1106 0.95 16 19 3.8e-07 3.3e-05 23.7 0.6 1 23 1112 1134 1112 1134 0.98 17 19 3e-05 0.0027 17.8 0.2 1 23 1140 1162 1140 1162 0.97 18 19 0.018 1.6 9.0 6.9 1 23 1168 1190 1168 1190 0.96 19 19 0.0038 0.33 11.2 0.6 1 20 1196 1215 1196 1217 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAGATAAATACGTCGGATCCGCCGCAGGGCGAGGACGCGGTCACGTCCACTATGAAGATATGCCGTGTCTGCCTACTCGACAATCTCATGATGCGCGATCTCTTCGTAGGGAACGAGGTCGCGTCCCTATCGGCGAAAGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGTGACGGTCTCCCAGCACAGGTGTGTTGCATGTGTGCTGACAAACTGGAGTCAGCATACGAGTTTAAGTTGCAAGTGGAGCAAGCTGATAATGTTCTTCGGGAAAAGTTTGTTGGAGGGATAATAAAGGAGGAATTGTTTCTTAACGAGGTTGAAATACACTTGGATACCGAAAGGAGTGACAATATCGAAGAAATCAGTGTCAGTACTGATTATGAATCTACTGTCACACTGCCAGTAGAGTCAGAAGCCGATAAGAACTTtctgaaaaatcaattaatgaTTTTAGAAGCTGAAAAGTTACAAGAGTCTGGGGAAATGCAACAAGATTCAGAACAAGATAACTCGCAAGAAATCACACAAGAAAGTATTGAGGAAGAATTGCAACAAGAATTATCCAGTGCAGAAGATAATGATATATCAGATGCTATCGATGAATCAAGGAATGAAGAACCTTCCAGCGACGAGAATATTATTCGAAGTTGTACAGATGCAATTCCAACAGAGGAACATGATTATATTATGCAGCAACAGTGTATATTGCCTGAACGATTCTCTTTGCAAGAAGATATACAAGAGACTGTATCAGAACTTGAACAAGACACAGTAGAACACCAAGAGACTCTATCCGAACAAAATCAAGAGATTTTAGCTGAACAGAATCAAGAAATTCAAACTCAACAAATTTACGAGCTTCAGGCTGAGCAAAATGAAGAAATTCAAGCAGAACTGAAAGAAGAAGCTCAGATCGAACAGGAGAGTAAAGCTGaacaaaatcaaaataagaAATTACCTGAGGAAGAAGCTAAAAATGAGCCAGTAGAACAGGAATCATTTCAAAATGAAACTAGAAGAAGTAAACGTAGATTGGCTCGTCGGACATTTACCGAGCGAGATTCCGACGAGGAGAATTACTTCGAAAATCTGAATCTCAGTTCACGATTGAAAAAAGCACAGGCAGATAAGACGGAGAAGATCTTTTTCATGTGTTACTTGTGCGATAAGCAGTTCCTTTCAAAGAGCGTTCTGAAAGAACATATGCACTCTCATGAAGAAGTGAGAAAAACGCTGTCGCTGAAGAAAACGCCGGAGAAACCGCAGAAAGTGCAGACCAGCGTTTCCGTCGTGAAAACGCCGCCATCCGGAAAAAAAGCCAACAAGTGCCCTTATTGTGGTaaagaatatttgtatataatttcgtTTACTAAACACATTAAACAACACGAGCGAGAACGGGAGGAAGCGAAGGAAGAGTCGATGCCGCTTGAGATCTCCTTCCACGAGGACGAGGACAGTCTAGACTTGGATAACGGCAATAAATCGGATAGCGAATGCAAGAAGCGAAAGAGAGGAAATACAGCCGACGACACCGCGAGCGACAATGATCATGATAAAAGAAGAAAGCGTAGTCATGTTGAGGAGTTTGCATGTGACAAATGTTCAgaaaaattcgatacaaaaCGAGGTTTGCAAAAGCATTCACTTAcgcatattaatttaaaatgcagCGTGTGCAACGAGGAGTACGATACTTTGGAACAACTAAGAAACCATCGAACGAAACATGTAGTTGAGGGCGTGCTCACCGAACAGGATTTGGAAGAGGATATAAAACAGATTGTAGTTAAAACCACTGAGAACAATGATGAAGACAACAAGAACATTGAAGATGAGGAAAACATTGGCGAATCCGTTGAAAATACGAAGGAAATAAAGTGTCCAACATGCTCAGTGACGTTCTCGCGCAAGAAAACGCTGACCAGACACATTGAGACGGCGCATTTTAATACTCGCTCTTACGAATGCAAGATATGCTGTCAACAATTTGCGCGGAAGGATCTCCTGCGTAGGCATTCTGAACAACATGCTCGAATGAAGACTTATAAATGTACCCAATGCAATAAAACCTTCGGCAACGAGCTTACGCTGAGAAATCACCTGGTTGCCACGAATCATAAGACATTTATACATGGGAAAGAATACGATCCAAACAAGCGTATAAAGCGTGTCGCGGCGAGAGCAGCGCAGAAAATCATTGACAAGATTAAGACGGAGGATGGTCTCGAGGATTACGACGATGATAACGATGATAATACCGATTATGACGCCAAGTTGGATGGGCATTATCGTCGTAAACGTGACGCTACACCAAAGAAGTACAGTTGTAAGAAAGAGTTTGAGTGCGCGTCTTGTAACAAGAGGTATAGCTCGAAGCAAGCGTTGTCAAAGCATATGGAACAGCATGTAAAGGATGAAAAAGCGGAGAAGGTAGCGGAGAAGGCAATGGAAAAGGCAGCGGAGAAGGCaacagaaaaattgaaaaagaccACTTTGGAGAAGAAAGAGACGCAGAAGATGAGCAACGTgggcgataacgatgatgatgataacGACTCCGACTTTGAAAGCGGTCTCGACTGGCCGATGGACAGCCATGAGTGCACCACGTGCAAGAAACGGTACAGTACGAAAAAATCGCTACTGCGCCATCAGCTGTTGCACGAGGAGCCAAATTTTGAGTGCGATATCTGCAATATCAAGTTCTATCGCAAAGACAAACTGAAGGCGCATTATGACAAGTGTTCGGAGAAGAATCCCGATCAGGTGAGAAAATGCAACATCTGCGGTGATAGTTTCGAGAACAATGAGATTTTGCGCGAACACAGGGCCAAACACGTCACCGAAGGTATCTTAACAGAGGAAGATCTGAGGGACATCGAGCCGAAATCCGAAGAAAAGAAACCGGGTGAGAAAATCGGCCGAAAGAGAAGAACCGATATAGTGGGGCTCGAATGTACCGAATGCAACAAACAATATACCTCTAGAAAGGGCCTACTGCGGCATATTCAAGTACACGAGGGCAAAAAGTACCTGTGTGACATATGTCCAAAGAAATTCTATCGGCGAGAGCATCTGAAGATCCATGTGGCCAAGCACAATATGATCAAGCCATATAAGTGCACTCGCTGCAGCAAGCGCTTCATCAAGGAAGAACAGCTCAACAATCACCTGCCTAAGCATGATCGCACTTTCAAGAAGAGCAAGGAGACCGACAGCTCGAAGAGATTCCTTTGTGAGATCTGCAGCAAGAGTTTCACGCAATCGACAACGCTGATAGCACATTTGCGCGCCCATAACGGTATCAAACCATTTGTATGCGAAGTATGCTCCAGGCCATTCACCACTAATGCTTACTTGAAGATGCATATGCGTACGCATACGCAAGAACGTCCATACATATGTCAGTACTGTTCGCGGGCATTCGCGCGTGCTGATACTTTGGCAAATCATTTAACGTCGCATACTGGCGAAGCCAAGTATCATTGCAAATGCTGTCCAAAGAATTTCCGGCGATTGAAATCACTGAAAGAGCATATGTTTATTCATACTGGTCAACGACCTTACGAGTGTCCAACTTGTGACAGAAAGTTTAACAATAATGGCAGTCGCTACGCGCATAGCAAGCGCTGCAAGCAGAATCTTTTGCAGAATCAGAACCGGGCACAGCAGATGATCCAACAGacacagcagcagcagcaacatcaacagcaacagcagcagcaacaacaacaacagcagcagcagcagcaacagcagcccCAAGTACAGATACATGTACAGCAGCAGTCACAGCCGCATCCGATCAGGTTACATCAAACTGCGATCGGTCAGGCACAGGTAGTCAAGGCGCAGAATATCAAGACGATTGCTATAGCGAGACAACCTGATCCTACCACAGTGGGTACAACGCAACAAGTAATGCAGCATCAGGAAATACTAATGCCTCTAATTCTACCACTTACCGTCACTCTCACCGATGTAGGTGAGGAGGTAATTTTACCCGAGGGTACAAAGATATTCACCACCTCCTAA
- Protein Sequence
- MDAVEINTSDPPQGEDAVTSTMKICRVCLLDNLMMRDLFVGNEVASLSAKAMSFANVKMLPGDGLPAQVCCMCADKLESAYEFKLQVEQADNVLREKFVGGIIKEELFLNEVEIHLDTERSDNIEEISVSTDYESTVTLPVESEADKNFLKNQLMILEAEKLQESGEMQQDSEQDNSQEITQESIEEELQQELSSAEDNDISDAIDESRNEEPSSDENIIRSCTDAIPTEEHDYIMQQQCILPERFSLQEDIQETVSELEQDTVEHQETLSEQNQEILAEQNQEIQTQQIYELQAEQNEEIQAELKEEAQIEQESKAEQNQNKKLPEEEAKNEPVEQESFQNETRRSKRRLARRTFTERDSDEENYFENLNLSSRLKKAQADKTEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKTLSLKKTPEKPQKVQTSVSVVKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEESMPLEISFHEDEDSLDLDNGNKSDSECKKRKRGNTADDTASDNDHDKRRKRSHVEEFACDKCSEKFDTKRGLQKHSLTHINLKCSVCNEEYDTLEQLRNHRTKHVVEGVLTEQDLEEDIKQIVVKTTENNDEDNKNIEDEENIGESVENTKEIKCPTCSVTFSRKKTLTRHIETAHFNTRSYECKICCQQFARKDLLRRHSEQHARMKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGKEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDDNTDYDAKLDGHYRRKRDATPKKYSCKKEFECASCNKRYSSKQALSKHMEQHVKDEKAEKVAEKAMEKAAEKATEKLKKTTLEKKETQKMSNVGDNDDDDNDSDFESGLDWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNIKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKSEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCSKRFIKEEQLNNHLPKHDRTFKKSKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPFVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMIQQTQQQQQHQQQQQQQQQQQQQQQQQQPQVQIHVQQQSQPHPIRLHQTAIGQAQVVKAQNIKTIAIARQPDPTTVGTTQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126152;
- 90% Identity
- iTF_01354771;
- 80% Identity
- -