Sinv007303.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Solenopsis invicta
Gene Symbol
-
Assembly
GCA_016802725.1
Location
NC:6813841-6818774[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0001 0.0089 16.1 4.5 2 23 374 395 373 395 0.97
2 15 0.00095 0.084 13.0 2.1 2 23 402 424 401 424 0.94
3 15 2.5e-06 0.00022 21.1 1.5 2 23 511 532 510 532 0.97
4 15 1.1e-05 0.00099 19.1 3.6 1 23 538 560 538 561 0.96
5 15 1.7e-05 0.0015 18.6 0.3 1 23 566 588 566 588 0.98
6 15 2.6e-06 0.00023 21.1 1.3 1 23 607 629 607 629 0.98
7 15 8.5e-07 7.5e-05 22.6 1.2 1 23 635 657 635 657 0.97
8 15 6.8e-06 0.0006 19.8 2.4 1 23 663 685 663 685 0.98
9 15 0.00095 0.084 13.0 0.2 1 23 691 713 691 713 0.99
10 15 3e-05 0.0026 17.8 1.1 1 23 719 742 719 742 0.92
11 15 1.3e-05 0.0012 18.9 1.3 1 23 748 770 748 770 0.98
12 15 0.00029 0.026 14.7 4.7 1 23 776 798 776 798 0.98
13 15 3.8e-06 0.00033 20.6 0.4 1 23 804 827 804 827 0.97
14 15 2.7e-06 0.00023 21.1 0.9 1 23 833 855 833 855 0.96
15 15 6.5e-07 5.7e-05 23.0 4.8 1 23 861 883 861 883 0.99

Sequence Information

Coding Sequence
AtgacaaaaataatgaataaggAAATGCCATTGAGTGTGGAATGGATGCCACAAAACGTGTATATGAACAATTCTCTGGATCACTTGCTGCCAGGAGATAGAAATCAGGACTACTTGATCATAAAACCGGAAGCAGAATTCTTTCAAAGCACTCTTAATTCACAGTCTGAGCAAGACAAAGTTGTGCCTCTACAAGTGCCTCTCTCACCTAAAGAGGACAAGGAAATCAAAGAACAAAGCAGCTGTTCAGATGTATTGGCACCCTGTCGAACGGATTCTTTAGATCAGAGACTACCCATAACATCGATTGACGtttcgaaaaaattatataacaaaggtCGCATCGATGTAATAGAGATGGCAGTAGACCCAGCGgtcagttataaatattttttcgtttatgAAGATCAGTTTTCCAAGTTTGTTGTACTAAAGGCTCTCCATAGCAACACGGCCAAAGAGATCGCGGCAAATCTATTAGATGTATTAGGAATCATAGGGGTACCGCGAGTGCTACAGAGCGGCAATGGACGTAAGTTTGCTGAGCAAGTTGTATATGAGCTACGTTTGCTGTGGCGCGATTTGTTCATACTGCACGGGGACGTGTCTAAGTGCGAAGTTAGCTGCAGGGATTTTAAAAGCTTGCTTGAATCCTGGATGAGAATGAATCCAACTAGGACCTGGAGCGAAGGGCTGAACTTCATACAGATCGTTCATAACTCGACGTACCGCTGTCAAAACGGCAAAGTTCCATATGACATATTGTTCACGCAAAACGCATATGAGAATTTTCAAGGTGTAGAAAAGGATAGGGGCAGTTTAAGGACGGAAGAAGAATTGATTGAATATTTGTCGAATAAGAAGGACGCAGATGTGGCTACGGTGACAGAAGACACGCAGAATAcatcgaatagtactaatCAGCgcgaagaaaatgaaaatgtacGAGATACACAGAGTGAAAACGCATTTTTGAAAGCCAATGATGTAAATATCTTTAGTTACGCCCATGTGAAGAATGAATCTCCGGCGAATAACGCATGCAGAACGGATTCCACTTCTACAGATGAAATAGACGTGAAGAATGAATCAAAAATCAACGAAGATACTCAATCCCTCAAATGCAAGTACTGCCAAAAGCAATATATGAAAATAGGGCATTTGAAAAATCACATGAGAACTCACAATGTGAAACAGGTTCTCCACTGTAAGCTGTGCAATAAAACATTTAGCGTTCCGAGATTATACGCAAAGCATGTGAAGCAATCGCATGGACAGGATAAATCAATCGATGACGAAAAAGAGACACCAGTCAGTAGAAATACGAGAAACAATACCAACGCATTAACGGTAATATCTAACAAAGAAAAGTCTGTAATCCAAACAACGCACGAAACATTGGATTCCGAGACGGTGAACGAAGACTGTGATTTCTCGTTGAATACGAAAGAATCCTCTAGCAAGAGCAGTAAGAGCTCCAGTCACAGTAGACGGAAGCTGTCTGCGGAGAGCCGCGTGTCGAAGATTTTACAGTGCACGTATTGCAAGCAAAAATTCAGCTTCCCGAGCGTGCTGGAGAGACATATGCGATCGCACACGAACGAACGACCGTACGTTTGCGAGGTGTGTAACAAGAGCTTCAAGCAGCTGGGCCATCTCAGTCAGCACTCACTGACCCATCACGATTATCGCTCGTTCCAATGCACGGTATGCGGTATAAAGTTTGATTCGTTAGATTTGCTGAAGCAACATGCGAACTCGCATAAAGGTGACGCGACATCGACGACGACATCCAAGATACGCGACGTATATCGTCTGTTCGAGTGCGATAGCTGCAAGAAAGTATTCACGACGAAGAGCGTGTTGGAGCGGCACATATTCACGCACACACAGGAACGTCAGTACGACTGTAAGGTATGTGGCAAGCGGTTCAAGCAGGCCGGTCACGTAAAGTCGCACATGCTAGTGCACACGGGCGAGCGTCGCTTTCAGTGCACCGTGTGCTCGAAACGCTTCAGTCTATCCAACTCATTGAAGAAGCACATGTACGTGCACAATGGCGAGAAGCCATATCAGTGTGACGTGTGCGGTGCGCGTTTTCTCGAGAAGCGCAATCTCAACGGCCACCTGCTGACGCACACCAACGAACGTCCGTACTGTTGTAAGATCTGTGGTAAACGGTACACCCTGGCGGACACTCTGCGCCGTCACGTTAGCGCCGCGCACGAAGATGGTCGTACGTATCAGTGCGAGATCTGTGCCAAGATGTTCAAGCAACTGGCACATCTATCGGTGCACAAGAAAGTGCACAACGACGAACGACCGTTCCAATGTCATCTGTGCGAAAAAAACTTCAAGCATAAGAATGTGCTCAAATCGCACCTGGCGATCCACGCGAACGTACGACCGTTCGAGTGCGATGTGTGCAAAGCAACGTTCGTCAGGAAGACAAATCTGCAGACGCATATCTCATCCGCGCACATGAACGAGCGTCCCTATACTTGCACTATCTGCGGCAAACGCTTCAAGCAGATTAGTCATCTGAACGGCCACGTGGTCGTGCACAGCAATCTGATGCCCTATAAGTGTGATTACTGCGACCGTCGGTGTAATCGACTCGACAATCTAAAGAAGCATATGCGCCTCCATATGAAGAATAAGGAGTGTGAAAGTACTTTGGCGAATTAA
Protein Sequence
MTKIMNKEMPLSVEWMPQNVYMNNSLDHLLPGDRNQDYLIIKPEAEFFQSTLNSQSEQDKVVPLQVPLSPKEDKEIKEQSSCSDVLAPCRTDSLDQRLPITSIDVSKKLYNKGRIDVIEMAVDPAVSYKYFFVYEDQFSKFVVLKALHSNTAKEIAANLLDVLGIIGVPRVLQSGNGRKFAEQVVYELRLLWRDLFILHGDVSKCEVSCRDFKSLLESWMRMNPTRTWSEGLNFIQIVHNSTYRCQNGKVPYDILFTQNAYENFQGVEKDRGSLRTEEELIEYLSNKKDADVATVTEDTQNTSNSTNQREENENVRDTQSENAFLKANDVNIFSYAHVKNESPANNACRTDSTSTDEIDVKNESKINEDTQSLKCKYCQKQYMKIGHLKNHMRTHNVKQVLHCKLCNKTFSVPRLYAKHVKQSHGQDKSIDDEKETPVSRNTRNNTNALTVISNKEKSVIQTTHETLDSETVNEDCDFSLNTKESSSKSSKSSSHSRRKLSAESRVSKILQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGIKFDSLDLLKQHANSHKGDATSTTTSKIRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHMKNKECESTLAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01406725;
90% Identity
iTF_01354770;
80% Identity
-