Basic Information

Gene Symbol
-
Assembly
GCA_003595255.1
Location
QKQZ01047524.1:16439-24518[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 6.5e-06 0.00098 20.2 1.0 1 23 183 205 183 205 0.98
2 32 0.0094 1.4 10.3 3.7 1 23 228 251 228 251 0.96
3 32 0.00064 0.096 14.0 0.5 2 23 258 280 257 280 0.96
4 32 0.003 0.45 11.9 0.1 1 21 300 320 300 321 0.95
5 32 0.0083 1.3 10.5 0.1 2 23 419 440 418 440 0.95
6 32 0.011 1.7 10.1 0.3 2 23 447 469 446 469 0.90
7 32 0.0002 0.029 15.6 0.2 1 23 540 563 540 563 0.96
8 32 0.07 11 7.6 3.1 1 23 569 592 569 592 0.95
9 32 0.13 19 6.8 1.5 1 23 605 627 605 627 0.97
10 32 3.6e-05 0.0054 17.9 0.9 3 23 672 693 671 693 0.96
11 32 4.8 7.2e+02 1.8 0.3 1 23 726 749 726 749 0.88
12 32 0.016 2.4 9.6 0.8 2 23 756 779 755 779 0.93
13 32 0.94 1.4e+02 4.0 0.0 2 23 788 810 788 810 0.90
14 32 0.027 4.1 8.9 0.0 2 23 817 839 816 839 0.93
15 32 9.3e-05 0.014 16.6 3.2 1 23 847 869 847 869 0.97
16 32 0.025 3.8 9.0 0.8 3 23 911 933 909 933 0.93
17 32 0.00022 0.033 15.4 3.3 1 23 936 959 936 959 0.97
18 32 0.00016 0.024 15.9 0.2 2 23 966 988 965 988 0.96
19 32 0.00095 0.14 13.4 3.9 1 21 1015 1035 1015 1036 0.95
20 32 0.0028 0.42 12.0 1.8 2 23 1050 1071 1049 1072 0.93
21 32 0.37 56 5.3 1.1 1 23 1075 1098 1075 1098 0.94
22 32 0.0092 1.4 10.3 1.6 2 23 1105 1128 1104 1128 0.91
23 32 3.2 4.8e+02 2.3 0.2 2 23 1136 1158 1136 1158 0.94
24 32 3.4 5.1e+02 2.3 0.0 2 23 1165 1187 1164 1187 0.88
25 32 0.24 36 5.9 2.7 2 23 1196 1218 1196 1218 0.96
26 32 0.64 96 4.6 0.5 2 23 1224 1246 1223 1246 0.92
27 32 0.017 2.6 9.5 0.1 1 23 1308 1331 1308 1331 0.95
28 32 0.00023 0.034 15.4 1.0 1 21 1359 1379 1359 1380 0.96
29 32 0.14 21 6.6 1.2 2 23 1481 1503 1480 1503 0.94
30 32 0.96 1.4e+02 4.0 0.4 2 23 1510 1532 1509 1532 0.94
31 32 0.72 1.1e+02 4.4 2.5 1 23 1543 1565 1543 1565 0.97
32 32 0.051 7.7 8.0 0.1 1 19 1569 1587 1569 1590 0.93

Sequence Information

Coding Sequence
ATGGAAGATGATTGTTTGCCAAAAGTCCTGTGTTATCGATGCATGTTCAACTTGGAAAATTTCTACGACTTCAGGACTGCATGTATTAACGCAGCTGCCTGGTTGGAAAGAAATAGGCCGAAGGAAGGCGCGAGCGATGACGACGCAAATGATAACGCGCAAATCGGCGAGGGACACACGGAGCTTCTTAATGGAAAGGAAAATATGCCAGTACTTATCCCAGAGGCACCCGTAGTCAATCCCAATGCAGCATTGGGTACACCGCCGAGATTAAATTCGGACGGTGAAGCAGATCCCGAGATCGAGGAGATTCTCGACACAAGCGAAGGTACGGATGAAGcTACAGTGATAGACGATTCGGAAGATCGGCGATCGGAATATGAGATGGCGTATGAGATGGACATGGAGACGAATCCTAGCGACTTCTTGGAAATGACCCCAATGGTAACCGAGGAGAATGAAGAGGAGTGCGATACGAACAACGCGAGCGCCGCGACTACTCAAGATACCACGGTCTTTCCACATACATCGCAACAACACGAAGTCTACGTCTGTTCTCTATGTAACAAGGCATTTAGTTCCAAGGGTCACTTGTCACTGCATGCGAGGATTCACGTGGGCGAGGGTGATGTGATCGGCGAGAGAGTGATCACAGACGATCATACTTCATACCAACGACCGTATCAATGTGATCTTTGTCATAAGTCTTATTCTACCGCCAAGCATCGCTGGGGACATGTTTCTACGACACATCGGGGACATCCTGCAGTAACGTGTGCATACTGTTCTCGTATATACTCGACGCGATATAATCTTGATGAGCATATAAAATCGCGACACGCTGGTCTACCGCCACCCCCAGAGTTATCTGTTCCCCTTTCCCGCACGGAAAATCGTTATCAGTGTCAAACGTGTCCGATGGTGTATACGGATCTGGCGGATTTCAATGCGCATCGTCAGATATGCGTCCAGGAACAACGTACAGACTTGTTGGGGCAAACTGAGGCGCAGAACAATAAGATTTTCGCCGACACGTCTGACATCTCGAGCGTAGATTCGGATGACGAGAATAAAGACTTCAGGAGTGCTGAGGCTAAATTGGCGAAAAATCCACAGTTAACTATATTGAAACAAGCGCTGACTAAAGGAGATAATTTAAAACGAAATTTCGACGATGATGGTTCAACATCCAGCGGCAAGccgaaaaaaatagttaagtcagAAGAGGACGAGACGAATCCTCAGAAAAGATGGTATTGTGAAGCTTGTCCACAAAGTTTTACATCGGTGGACAGTTTGAAGGAACACGAGATCAGGCACGACGCCGAGAAGCCGTTTATTTGCATACTCTGCAACAAAGATTTCGCTTTGAAATCTTCATTAGTTAGACACATTACAATGTCACATGGCGTTGATCCTACTCCTATCATTGACAGTGATAAGTGTCTAAAATCGACAGTAATGTCTCAAAATTGGAACGATCGAGTGGACGTCAGTGTCTATGAGCaaagtgaaataaaagaaCCACCAGAGCTCTCGTCATCATCTgagATAAATTTGGAGAATGATGACAAAGATTATAAGAACAACCACGAGAATATAGAAATTGAAACGGTATTCGTATGTGAGACTTGTAAGAGAGATTTCAACGACCGAGCATCATTATGGCTACACATACGAGCGATGCATAAAGAATATGCTGCATTTACCTGTGGAGTGTGTTTAAAAATGTGCTTTAATAATACGCAACTTCAAAATCATGTCTTTATGTATCATGGAAGGTCTAAACTCTTAATATCGGAACAAAGAAGGTACAGTTGCACTATATGCGGTAGACAACATGACTCgagaaaaaaactaattacTCATGTCTCGATACATAATGTCGATCCTGCCTATGATCCTGCAAgttttgtacaattaaatagtaattattataatgaaaacttAAATGGTAACGAAGGAAATGAACAAGTATTAGATTTTGACGGGGAAGATGGTGAGAAGGTCGATTGTTACATTTGTTACAAATCTTTTCCGACTGAGGATCATCTAATACGACATCAGAGAAATGCTCATAAGTCTGATCAGATAGGTTCATTAGGAGATGGCACGGGTAATGGAAATACTCTGAGCGTCAATGGTAATGGTAATAGGGCGcagtatcatttattttttgtttgcgaAGTATGTGGCAGTTCACATTCGAGCAAATGGGAGCGCTGGTTGCATATCAACGATACGCATAACAACGAATCTTCTATCAAATGCGAATGGGAGAGTTGTGGAAAGATATTTGCGACGAAGTCGCTACGTAATGAACATCTCCAGCATCATGCGGTGCAAGGACCCTCGCCAAATACCTGCGAGATATGCGGGAAATTATGGCCTACCCGCGTCGATTATTGGAAACACGTGATGGGCGTGCACGCGGATACAGTGCCTCTCATTTGTGGCGTTTGTCTGAAAGTATTTTCCGATGTTATGCAATTAAGCGCGCACGTGAAGGCGAAGCATTGGCCGCTAACTAGTGGTGACTTCTGTTGTGATATTTGCGGTAGACCATACTCTAATAAATCAAAGATGTCTCGGCACAGAAAGATCCACGGCTTGGAGGCGGCGACGGCAGCGGCCATGGACGTTGCATGCGATAACAGCAGTTTCAATGAAACGACCAATGAATCGGTGAAGCCCGAACACAGCAATGGCGCTTCGGAATTAGAGTTAAATTGCGAGCAATGTCCCGAGCTTAGCTTCACAACACTGGACAGTTTGTGTAATCATCGACGGATAGCGCATAATCTTTTCCCATGCGACTTGTGTAACAAGTGCTACGGCAGAACGTCACACTTATGGAAGCATGTGAATAGAGTTCACAAAGGACACGCGGACGTGACTTGTCCTTATTGTTCAAAGACGAGCGCGTCGAGGGATCATCTAGCAGCGCATATCGCCAAGATTCACAGGTTCATGCCCGCAATGGGTAAGGACACTCAAAACTGCGTCACTTCAAAGTCCTTGAGTGTGGAGGACGGTGTCTTGCATTACTGCGAGAAATGTAACAAGGGATTCCATAAGCGCTACCTGCTCCGTCGTCACATGAAAGGCTGTCAAAACTATCGTAAGGATCCGGGCGCGTTGTTGACTCGTTGCCGAGCCTGCGAGAGGATATTCAAGGATCGTGCGAGTTTGCAGAAGCACATTGAGAATCATCACAGCACGTATACTTGCCATTTGTGTAACGAGACGATCACTTCCAAGTTGGGCATTATGACGCACAATCGCGTCAATCATATGGATCACCCAGATCTGACGTGCGATCATCCGAGCTGTAAAAAACTCTTCCGCACCAAAGAAGATCTGGAAGCTCATCGCAAGGAACACAAGTATCATAGCAACCCGAACGTTTGTGACTTTTGCGGTGACACCGTGGAAAACAAATTGAAACTGAAGATGCATGTACTGTCGTTGCATCGAAACGAGATCGGCGTATCCTGCGGCGTCTGCCTCATTCCTATGAAGGACCCCAAAGATTTGAAAAAGCATGTTGAAGCGGAACATAGCAGTGTTCTGTCCAATCCAAACACGTGTCAGGTGTGTGGCAAGCAATACGCGTCCAAGTGGAAGGCATTCGATCACACGAAGAAGTGTCATGGCAAAGTTTTCATCACCTGCAAACAGTGCTTAGCAGTTTTTACCAACGAGAATGATATACGCGATCACTATGAGCATGTGCATAATGTTCCAAAGGACCAATTGGCCATTTTCGAATATAGAATGGATATTGGTGCAAAGAGGGAGGGTTATGAGACTCCCGATATTATTGTGAAGGAGGAACCGGATGATTTGGAGTTTGACGAGGAACTGTGCGACGAGAGTTCGAACGACTCTCGCAAACGTAGAAGATCGCCGAATGATACGTATGACTGTGAAATGTGTCCCGAGATCTTCCTCAATTCGGACACTCTCGCCAAACATTATCAGAACGTCCATAACACCGATCCCGTCCGTATGTTCAAGAAATTCAAAAAGGATAATGGCGACAGCAAGCGCAAGATGAGAAACAGAAACAATTTTGAGTGCAAGAATTGCAAAAAGCAATTCTCTACTAAGACTCTATTCTGGAATCATATCAATGCATGTCCGCGGCGAAACTCGATAGGTAGATTTGATATGCCAAATAATGTTCCAACGTCAATACTGGAGTCTCAtctaaagaataataatcagATACCACGAGAAGAATCGGTACCGCTTACGAACGAATCCAATTTGAACATTCCCGACTTCAATTTATTCGAAGACATTAATTTACAGTTGTCAGCTCAAAAACCTGTACCGAATCTTATGCCATTGTCGCAAATGAAGGCGACGGGTAATAGCAAGTGTTCGAGAAAAGACTCACGCAAGGTTTACGATGAATCGACCAATACCGAATGCACGTGCGAGGTCTGCGGTAAACCGTGGCCTGCCAAGAAACATTTGTGGCAACACCTAATTCGATTCCATCGCGCCGAAGCCGCCGTTACGTGTGGCGTATGCTTAAAGCTGTGTAAATCTTATCAAGATCTGGCCGATCACTTGAAGGCCGAGCACGCCCCTGTTTTGTCACCGGAAGGCAATAACTTTACTTGTAAGACATGCGGTAGATATCATAATGCGAGAAGCAAATTACTGTTGCACATGAGCATCCACATCGGGAACTTCCGGTGTCAGAAATGCCAGCAAGGTTTCGCGAGTGAGGAAAAACTCGCCGAGCACGCGACGAGCTGTAATGGCAAAGAGTTTGAGGATCACGCGGTGGCGGACGAAGATAACGCAAAGAACGACAACGACGAAAAGGGCAGTTTAATTGCCGATGAGACGTCGGTCATCGAGGAAGCAGAGGAAGCGGATTTCGATTCGGAAGGCGAAAGGAGTAGGGATATTAACGATGAAGACAATTCGGAAAACAGCGAAGAAGACAATTCGGATAATAGCGACGATTCAGACAGCGATAGTAATAGTAGTTCGAGTGAAGACGAAAACGAGAATGAAGAgggagaggaagaagaggaggaggaagatgaaaatgaaaatgaaaatgagtCTGATACGAGAACCACTAGTAGAGCGAGCGGCGACAGTGTATCGTGTAATTCCGAGAGCGATGAAGAATCGGATATGGATGAAACGGAAGTGAATGCAACGGAAAAGAAAACGATACAATTGACCGATATTGGTAGATTCAGGATACGCAGTGAAGGTATTCAAGAGAATATGTCGATGGAGAACGCCAAGGACCAGAAAACCGAGCTTACCGTAATGACGGCTGCAGAACAgactaaacaaaataattttaatgatcttATGACTCCCAGCGCATCTGTAAACAAATTTGAGGCGTTTCATCTCGAGGAATCTGCTAAAGCTGCGACGAGCGATGTAGACTTATCTGACGATAATGAAGACGATGGTGATAACGAGGACGATGATgaggaaaataatgaaaatgaagaggaggaggaagatgGTGAAGAAGGTGGTGAGGATGAAGACGGTGAGGATGAAGATGAAGGTGAGGCTGAGTCTGAAAGTGAGAATGAGAATGAGAGTGAAGCCGCAGTTGAGggagaaggagaagaagaagaagaggaggaggaggaggaggaagaggaagaggaagaggaagaggaagaagaagacgaTGAAGACGACGGACCGCCTGTGTTAAGTCCAATAATGCCTTTGTTACCAGAAAACGAATCTGAGGAGCACAGCGGTACAACGGATCGCACAAGGCACAAGCTTAGCCCAATGGTTTCGCTGAGTATGGCTAAAGATTTGGAAGAGTGTGAAATAACCGAGATACCAAATGATGCGGAGAATGCAGCGAACTTCTTTGCGGCTAATAACAATGATCTGCCCATAACATGGGAGAACTTGGACGATAACGGAATCGACAATGGCGATTGCAATTCGGACATTGAAGACAGGGATGTGGAAAAAAATGAGGACTTCAGTAAGGAATATGACAAAATGGGAGTGCATGAGGGCGAAGACTTTGAGGAGGATTCCGCAGATGAGAATGTAGTGGACAATTGTAGGGAAGGTGATGGAGATAATCAAGTGCACGAGATGCATAATCTGGATGGAACTGTGTTAATGGTGACTAATGACGCGGAAGGTAATCAGATTTTGATTGAACAAAACGTGCTAGATATCGATAACGAGGACTCTAATGTCGAAGCGACGCAATATATTTATCCAGAGAACACTTACGAAATCGCGGAGGAAGACTACGCGACGCGAAACGAAACCGATGTCATGCAAACGGATGAGATGCAAAGTGGTATGTCCTACGTTCAAGTTCCATCGGAGAACGAGGATAATAGTATGGAAGGTGTTGTCGAGGAGAACAGCAGTGACGTGCAGAAACAATAG
Protein Sequence
MEDDCLPKVLCYRCMFNLENFYDFRTACINAAAWLERNRPKEGASDDDANDNAQIGEGHTELLNGKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEECDTNNASAATTQDTTVFPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPLSRTENRYQCQTCPMVYTDLADFNAHRQICVQEQRTDLLGQTEAQNNKIFADTSDISSVDSDDENKDFRSAEAKLAKNPQLTILKQALTKGDNLKRNFDDDGSTSSGKPKKIVKSEEDETNPQKRWYCEACPQSFTSVDSLKEHEIRHDAEKPFICILCNKDFALKSSLVRHITMSHGVDPTPIIDSDKCLKSTVMSQNWNDRVDVSVYEQSEIKEPPELSSSSEINLENDDKDYKNNHENIEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFNNTQLQNHVFMYHGRSKLLISEQRRYSCTICGRQHDSRKKLITHVSIHNVDPAYDPASFVQLNSNYYNENLNGNEGNEQVLDFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQIGSLGDGTGNGNTLSVNGNGNRAQYHLFFVCEVCGSSHSSKWERWLHINDTHNNESSIKCEWESCGKIFATKSLRNEHLQHHAVQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEAATAAAMDVACDNSSFNETTNESVKPEHSNGASELELNCEQCPELSFTTLDSLCNHRRIAHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHADVTCPYCSKTSASRDHLAAHIAKIHRFMPAMGKDTQNCVTSKSLSVEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLEAHRKEHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFITCKQCLAVFTNENDIRDHYEHVHNVPKDQLAIFEYRMDIGAKREGYETPDIIVKEEPDDLEFDEELCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKDNGDSKRKMRNRNNFECKNCKKQFSTKTLFWNHINACPRRNSIGRFDMPNNVPTSILESHLKNNNQIPREESVPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQMKATGNSKCSRKDSRKVYDESTNTECTCEVCGKPWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQKCQQGFASEEKLAEHATSCNGKEFEDHAVADEDNAKNDNDEKGSLIADETSVIEEAEEADFDSEGERSRDINDEDNSENSEEDNSDNSDDSDSDSNSSSSEDENENEEGEEEEEEEDENENENESDTRTTSRASGDSVSCNSESDEESDMDETEVNATEKKTIQLTDIGRFRIRSEGIQENMSMENAKDQKTELTVMTAAEQTKQNNFNDLMTPSASVNKFEAFHLEESAKAATSDVDLSDDNEDDGDNEDDDEENNENEEEEEDGEEGGEDEDGEDEDEGEAESESENENESEAAVEGEGEEEEEEEEEEEEEEEEEEEEEDDEDDGPPVLSPIMPLLPENESEEHSGTTDRTRHKLSPMVSLSMAKDLEECEITEIPNDAENAANFFAANNNDLPITWENLDDNGIDNGDCNSDIEDRDVEKNEDFSKEYDKMGVHEGEDFEEDSADENVVDNCREGDGDNQVHEMHNLDGTVLMVTNDAEGNQILIEQNVLDIDNEDSNVEATQYIYPENTYEIAEEDYATRNETDVMQTDEMQSGMSYVQVPSENEDNSMEGVVEENSSDVQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01355612;
90% Identity
iTF_01016010; iTF_01355612;
80% Identity
-