Sfur007012.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chrX:33085220-33092114[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.019 27 5.2 0.2 22 44 356 378 343 382 0.79 2 7 0.057 80 3.7 0.1 22 46 384 408 380 410 0.89 3 7 0.0065 9.1 6.7 0.1 21 45 411 435 407 439 0.88 4 7 0.00094 1.3 9.4 0.3 18 46 436 464 435 471 0.88 5 7 0.011 16 6.0 0.1 26 46 472 492 466 495 0.91 6 7 0.0027 3.7 7.9 0.2 21 46 495 520 491 523 0.90 7 7 7.6 1.1e+04 -3.1 0.2 26 43 531 548 529 550 0.85
Sequence Information
- Coding Sequence
- ATGGAAAGAATATTCGTCAATATGAGAGAAAATCAACGAGTCAATAATTCCCCTTATGCTGCAACAGCAGATATGGATAATCGCAGTATGGATGCGAGTAGATCAAATAGCGGAGCGAACAATTTAAAAAGTGGCAATACTCAACAACAGCAGCAACAACAACAACAAATGGATGTATCCAATGTGTCTAAATTGAACAAAGCGAAAAATAAGCCAGCAATAAAGTGGTCTTCGAGTGAGTGCTCCAACAATGGTGAAGATGGAGCCAGAAACGGAGGCAATATTGGTGTGGGCAATGGCAAGTACCACAATGTTCATGGTAATGCGGCGATCATGGGCCCGTCAGGCCCCTACAACAGCAACTTGCAGCAATCACCAGCTGGTATGCAGCATCCCCCCTCTGTCGACCAGGGTCTACCGCCTCACTATCCTCTCCCTCACTATAGCATGTCCTCCTATCTATATGATATAGGTCTGTACAATAAGACACTATTCAGCAATGTATCAACAGCACAAACTTCATCGATTGGCTGCTCGACTTTGGCACAGAACAACGCCGCAGATCATCCGATTGGACTTCTCAAGGACGATCAGCAGCAACATCAACAGCAACAAGATTCCAACAACGGTCAGGGCGACAAAGCCAAGAAGCCAGAACTCGGATCCGAAGACAGGATGCAAACAAATTCAAATTCTCGCAGCTCCAATCCTCTCATGAAGAACCTCACCTCTCCCGATAAGCATACAAAAATGACACAAACTGAAATTAGCACAACAAGAGGTATACCTCCAGAGTTTATGGCATTTATGAGAGATGGGAATGATTTGAAGAACTCTTTCGCAGCCGCTTCGACCAATGCCACCAGGAGTCTCGAGCTCATGGCTCTATTCAAAGACAGCAACCCTTCGGCCATGAATGAGGAGCATGTGAAGAATAACTGTAGTGAAGCAGGAGCGACGTCAACAACAGTTGCCACCACAACGGGGGGCAACACGACGCTGTCATTGGCTGCACTGATGTCGACGGCAGTGGTGCGACACCCTCCCCCCCTTGAGCCATCCGACCGGAGGCCCTACTCGTGTGACACCTGCTTCAAATGCTTCACCACATCGGGCAACCTCAAGCAGCACATTGTTATACACTCGGGGGAAAAGGTGCACACCTGCGAGTACTGTCCGAAATCGTTCAATCACTCGAGTAATCTTAAGGAGCACCTAAGGATACACACTGGGGAGCGCCCCTATACCTGCGATGTCTGCGAGAAGACGTTTGTGCGCTCAGGTAGTCTGAGGGAACACATGCGCCGTCATACCGGTGAGCGGCCCTACATCTGCATAGTGTGTCACAAGGCTTTCTCAACCTCTTCCAACCTCAAACAGCACCTCACCATTCATTCAGGAGTCAAACACTACACATGCAGCGTTTGCTTGAAATCGTTCAATCATTCAAGCAATCTCAAAGAACATCTTCGAATTCATAGTGGTGAACGCCCGTTCTCGTGTCACATTTGTAATAAATCGTTCTGTAAATCATCCAACCTCAACAAGCATATGTCGATACATTCTGGTGAACTAGCAATGAAGAACTATTCGTGTGAGGTGTGTTCGAAAACGTTTTCGCGCGCTACCAACGCGAGGCAGCATACGAGAAAGTACTGTTCGGGGGCAGTGTCGGTGTACGTGGGTGGGGGCGGGGGTGGCGGTGATGGCGAGTCTAGCTCACCGCCCCTTGAGGTCACCATCTCTGAACAACAGCAGCAGCAACAGCACCAGCACCATCAACATCATCATCACCACCATGTTATGGGTGACTTTGTCGGTGAGGTTGTCTGA
- Protein Sequence
- MERIFVNMRENQRVNNSPYAATADMDNRSMDASRSNSGANNLKSGNTQQQQQQQQQMDVSNVSKLNKAKNKPAIKWSSSECSNNGEDGARNGGNIGVGNGKYHNVHGNAAIMGPSGPYNSNLQQSPAGMQHPPSVDQGLPPHYPLPHYSMSSYLYDIGLYNKTLFSNVSTAQTSSIGCSTLAQNNAADHPIGLLKDDQQQHQQQQDSNNGQGDKAKKPELGSEDRMQTNSNSRSSNPLMKNLTSPDKHTKMTQTEISTTRGIPPEFMAFMRDGNDLKNSFAAASTNATRSLELMALFKDSNPSAMNEEHVKNNCSEAGATSTTVATTTGGNTTLSLAALMSTAVVRHPPPLEPSDRRPYSCDTCFKCFTTSGNLKQHIVIHSGEKVHTCEYCPKSFNHSSNLKEHLRIHTGERPYTCDVCEKTFVRSGSLREHMRRHTGERPYICIVCHKAFSTSSNLKQHLTIHSGVKHYTCSVCLKSFNHSSNLKEHLRIHSGERPFSCHICNKSFCKSSNLNKHMSIHSGELAMKNYSCEVCSKTFSRATNARQHTRKYCSGAVSVYVGGGGGGGDGESSSPPLEVTISEQQQQQQHQHHQHHHHHHVMGDFVGEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354065;
- 90% Identity
- iTF_01354065;
- 80% Identity
- iTF_01354065;