Basic Information

Insect: Sogatella furcifera
Gene Symbol: -
Assembly: GCA_014356515.1
Location: chr1:18940478-18961432[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.8 3.9e+03 -1.7 0.0 27 43 260 276 251 281 0.88

2 11 0.024 34 4.9 0.1 21 44 282 305 278 309 0.91

3 11 0.12 1.7e+02 2.6 0.1 21 45 310 334 305 337 0.89

4 11 0.00077 1.1 9.7 0.5 21 48 338 365 334 371 0.91

5 11 0.98 1.4e+03 -0.3 0.0 21 44 367 390 362 395 0.86

6 11 0.072 1e+02 3.4 0.4 21 44 396 419 392 423 0.90

7 11 0.015 21 5.5 0.4 21 48 424 451 419 458 0.90

8 11 0.3 4.2e+02 1.4 0.2 21 48 453 480 447 483 0.83

9 11 0.07 98 3.4 0.4 17 47 478 508 473 513 0.86

10 11 0.11 1.6e+02 2.7 0.2 22 43 511 532 508 537 0.90

11 11 0.0004 0.56 10.6 0.0 21 45 538 562 533 567 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.8	3.9e+03	-1.7	0.0	27	43	260	276	251	281	0.88
2	11	0.024	34	4.9	0.1	21	44	282	305	278	309	0.91
3	11	0.12	1.7e+02	2.6	0.1	21	45	310	334	305	337	0.89
4	11	0.00077	1.1	9.7	0.5	21	48	338	365	334	371	0.91
5	11	0.98	1.4e+03	-0.3	0.0	21	44	367	390	362	395	0.86
6	11	0.072	1e+02	3.4	0.4	21	44	396	419	392	423	0.90
7	11	0.015	21	5.5	0.4	21	48	424	451	419	458	0.90
8	11	0.3	4.2e+02	1.4	0.2	21	48	453	480	447	483	0.83
9	11	0.07	98	3.4	0.4	17	47	478	508	473	513	0.86
10	11	0.11	1.6e+02	2.7	0.2	22	43	511	532	508	537	0.90
11	11	0.0004	0.56	10.6	0.0	21	45	538	562	533	567	0.87

Sequence Information

Coding Sequence: ATGGCTGAAGAAGCTGGACGTTTGTTTGAGAATTACTTTGACAGCGCGCAAAAAGTGGCCAGGAAGAACCTGGAAGACGCTTTGCGTGCTGATTCGACAGGCGTCTATCGGTTCATTTTGAGTGGTGGCAATACCGTGGGCCACAATAGTGGCATTAGTGGGATTCCTAATTCTGTTGGACACAATAGTGTGTTATCCAACACCGGGGGACATAGTAGCGTGGTTCCCAATGCAGGGGGGCATAACAGTGGAGGACACAATAGTGGGGGTCACAACAGCGGAGGACACAACAGCGCCGGACACAGTGCTGGAGGGCATAATACAGGGCACAGCACAGGAGGACACAATACAGGGCATAGTGGTGGAGGACACAATACAGGACACAGCAGTGGAGGGCATAGTGGTGGGGGGCATGGCGGTGGGGGACAACACCCCGGTGTGCCGAATAACGGGGGCCACCAGCAGCAGCAGGGTGGGGGCTCGCAGCTGGTGGACGTGGGGACGAGCACCCCTTCGTCGGGGGTGCAGGTGCCGACCACGGTTGGCTCGACGGGTGGATCGGGTGGCGGCGGACAGCGTCGCGACGACAGTGGCGGCGGCCGAGTGATGTACCGCGGCGCCAACCAGGAAGAGGTGGAGGTTGAGGTGGATGTGTGTACCGATGTCTACTCGCAGACGTCGGGCGGCTCGGGCGGACAGCCCTCCTCCCTCGACGGCAAGGACCCCACCAAATGTCCTGTCAAGCCCCGCAAGCCTCCCAGGCACGGCGACTATCGATGCAAAGTCTGCTTCAAATCGTTCTCACAGATGGTGAACTTGGTAACACACGAGCGCATTCACACCGGCGAGCGTCCGTTTCGCTGTGAAATCTGTTTGAAAACGTTCACACAGCAGCCGAACCTGTGGAAGCACGTGCGCACGCACACGGGCGAGCGTCCCTACCGGTGTGAGACATGCATGAAGGGCTTCACACAGCAGGCTAACCTCACCAAGCACATACGGGTGCACACCGGTGAACGGCCTTACTCATGTCATATCTGCGGGAAGGCATTCTCACAGCAGCAAAACCTGCAGAAACATGTGCGCTTTACACATAACGGGGAACGGCCCCTGCAGTGCGACACTTGCCAGAAGGGCTTCTCGCAGCAGGTGAACCTGGACATGCACGTGCTGGCCATTCACAAGGGCGAGCGGCCTCACCAGTGCACGGTGTGCGACCGCGCCTTCACGCAGCCCGTCAATCTGCACAAGCACCAACGGGTGCACACCGGCGAACGGCCCTATAGCTGCACGCTCTGCGGAAAAAGCTTTGCTCAGCAGCAAAACCTGATGAAGCACGTGCGCTGCACGCACAACGGCGAGCGTGCCTACCCGTGCGACATCTGCGACAAGCGCTTCTCGCAACAGGTCAACCTCGACAAGCACGTACGTGCCGTGCACAACAAAGAAAGGCCTTTCGAGTGTCTCACTTGCAACAAGCGCTTCTCCCAACAGGCTAACCTGACGAAGCACGTGCGCCTGCACACGGGCGAGCGTCCGTTCCACTGCCGGTTCTGCACCAAGACATTCGTGCAGCAGTCGAACCTGGACCGGCACGAGCGCACGCACACCGGCGAAAAGCCTTTCACCTGCAAACTGTGCTGGAAGTCGTTTGCACAGAGTGGTAACCTGGTCAAGCATCAGGCGTCGCACCACGGCATGCTCACCCCGTCCACGACAACTGTGGACGCCGTCGAGAAGGCGGGAGGCGTGGCCGCATTCATTGCCAGCCAGCAGGCCAGTCAGGACGCCTCCTCCAACGACAACAACGACAAGTCAAGCATCTCCAAATCCGATTTCGATCAGAAATCCCTAGCCGAACAACTCATGAACCTCGGCGCCGGAGTTGGCGTGAGTGGGGGCAGCGGAGGCGGCGGTAGTGGCGGTGGCGGCGGCAGTGGAGGCGGAGCGCCCGACTCGAAACCTGTGCCTCCCTTCAATCCCCCCTTCAGTCATCCACCCAACTACCCGCCAAGAGACGACCAGGTCAATCCCAACGACGACAAGCATCGAATCACAGGTATGTCCATACCACATAACAACAAAGGCCACGACATGGGATTCATCGGCAATCCGAGGCCGTACTGCGTGGGAAATCCAAGGCAAATGGGAGTGGGTAGTCTGCGGACCATTTGTCTGGAGAACTCGCGAATGCCGTGTCCCAAGTCGTCTGGCAGCAACGATATCGGTAACCAACAACAACAGCAAGGTGTGAATAGCATGAACACATCGCGAGGCGGCATATGCAACTCGAGAACGGATGGCATGGGGCCAGAACCTAGACCCGGCGACATGAATCTCAATCTGAGGGGCTCCAATGCCATGGACGGTCGCAAAGGCGACGAGCTTCGCCATCCCAGAGTGCCCACCTTGGAAATACCCAGACCCGACGCCATGGGCCGCATGGAGAGAATGGGCAGTCGGCCCGATCTCATGGAAAGTTCAAAAGCACTCGGCATAGTGAATTCGCGGCCAATCAATAGTTCCATTCCAAATGACAAATAA
Protein Sequence: MAEEAGRLFENYFDSAQKVARKNLEDALRADSTGVYRFILSGGNTVGHNSGISGIPNSVGHNSVLSNTGGHSSVVPNAGGHNSGGHNSGGHNSGGHNSAGHSAGGHNTGHSTGGHNTGHSGGGHNTGHSSGGHSGGGHGGGGQHPGVPNNGGHQQQQGGGSQLVDVGTSTPSSGVQVPTTVGSTGGSGGGGQRRDDSGGGRVMYRGANQEEVEVEVDVCTDVYSQTSGGSGGQPSSLDGKDPTKCPVKPRKPPRHGDYRCKVCFKSFSQMVNLVTHERIHTGERPFRCEICLKTFTQQPNLWKHVRTHTGERPYRCETCMKGFTQQANLTKHIRVHTGERPYSCHICGKAFSQQQNLQKHVRFTHNGERPLQCDTCQKGFSQQVNLDMHVLAIHKGERPHQCTVCDRAFTQPVNLHKHQRVHTGERPYSCTLCGKSFAQQQNLMKHVRCTHNGERAYPCDICDKRFSQQVNLDKHVRAVHNKERPFECLTCNKRFSQQANLTKHVRLHTGERPFHCRFCTKTFVQQSNLDRHERTHTGEKPFTCKLCWKSFAQSGNLVKHQASHHGMLTPSTTTVDAVEKAGGVAAFIASQQASQDASSNDNNDKSSISKSDFDQKSLAEQLMNLGAGVGVSGGSGGGGSGGGGGSGGGAPDSKPVPPFNPPFSHPPNYPPRDDQVNPNDDKHRITGMSIPHNNKGHDMGFIGNPRPYCVGNPRQMGVGSLRTICLENSRMPCPKSSGSNDIGNQQQQQGVNSMNTSRGGICNSRTDGMGPEPRPGDMNLNLRGSNAMDGRKGDELRHPRVPTLEIPRPDAMGRMERMGSRPDLMESSKALGIVNSRPINSSIPNDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01353983;
90% Identity: iTF_01353983;
80% Identity: iTF_01353983;