Sfur002956.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr5:2646614-2652483[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.016 22 5.5 0.0 22 45 238 261 234 268 0.86 2 6 0.07 98 3.4 0.0 22 44 266 288 262 293 0.89 3 6 0.044 62 4.0 0.0 22 45 294 317 290 324 0.86 4 6 0.025 35 4.9 0.0 22 45 322 345 317 353 0.85 5 6 0.072 1e+02 3.4 0.0 22 51 382 411 372 413 0.80 6 6 8.5 1.2e+04 -3.3 0.0 23 37 453 468 450 474 0.75
Sequence Information
- Coding Sequence
- ATGTCAAAAGTACCATTTGTGAGACTTGTTAGATTGGAGGACCTCTTACATCTAAGATACGAGACAAATTATATCAAAAAGGAAATTGGATACAGCGAGAATGTTCCAATGCAATTGGATAACAGTGGATTCATACCGAGAATCAAGACAGAGTTGTTGGAGGAAGCAGATGATTCACAGATGACCAATGCCGATCTGGAGAAAGATCACTGCAGGGAAGAGGCAGAGTCTGATTTCACCACAATTATTATCAAGCAGGAAGAAGTGTGTGATTTCCATTTCATTGAAGGATGTGCTGAAGATGTAGGATTTGTGGACAGCAAGGACAATTTGAGTTTGATTTCTACAGAAGGAGCCACCATACAGACTGGGACTGTCAGGAATGGTGAATCAGTGTATAATGAAAATGCCATTCTGCCAACAGATCCTGAAAGTAATCCATGGATTCATCAATATCCACAACAGTCTCACAGATGTGCTCATTGTAATTATCAATCTACAAGAATGAGTGGTTTGTTCAGACACATTAGGAAGAATCATTCTTCTGGGGGTGGAAAAAACCTTGTTCACTGTAACTCCAAAGAAATTAGAACCAACAAAAAGAAACATGGAAAAACACATACAGGGGATAAGCTACACAGCTGTAAGATATGTGATTATAAGACTAATAACTCAGGTTATTTGAAAATACATGTTATGACACATACAGGGGACAAGCCTTTCAGCTGTAAGTTTTGTGATTATAAGACTAATCAATCGGGTAATTTGAAGAAACATGTCATGACACACACAGGGGACAAACCTTATAGCTGTAAGTTTTGTGATTACAAGACTAATAAATCAGGTAATTTGAGGAACCATGTAATGACACACACAGGGGACAAGCCTTACAGCTGTAATTTTTGTGATTACAAGACTAATAAATCAGGTAATCTGAGGAACCATGTAATGACACACACAGGGGACAAGCCTTACAGCTGTAAATTTTGTGATTATAAGACTAATCAATCTAGTAATTTGAAGACACATGTCATGACACACACAGGGGACAAGCCTCACAGCTGTAAGTTTGTGATTTCAAGGCGATTGTATCAGGCTATTGTATCAGGTGATTTGAAGAGACATGTGATGACACATACAGGGGACAAGCCTTACAGCTGTAACTTTTGTGATTATAAGGCTATTCAACCTAGTAATTTGAAGAAACATGTCATGATACACACAAGGGACAAGCCTCACAGCTACTATTACATGAGGTCCTTTGAATACACATGTCATGACACACAGGGCACAAGCCTCATAGCTTCTATTACATCAGGTGATTTGAAGAGACATGTCATGACACATACTGGGGACAAGCCTTACAGCTTTGAAATTTGTGATTATAATACCATTCATCAAAGTGCTTTGAAGATACATGTCATGAAGCATAAGAGATCTAGCACCTAA
- Protein Sequence
- MSKVPFVRLVRLEDLLHLRYETNYIKKEIGYSENVPMQLDNSGFIPRIKTELLEEADDSQMTNADLEKDHCREEAESDFTTIIIKQEEVCDFHFIEGCAEDVGFVDSKDNLSLISTEGATIQTGTVRNGESVYNENAILPTDPESNPWIHQYPQQSHRCAHCNYQSTRMSGLFRHIRKNHSSGGGKNLVHCNSKEIRTNKKKHGKTHTGDKLHSCKICDYKTNNSGYLKIHVMTHTGDKPFSCKFCDYKTNQSGNLKKHVMTHTGDKPYSCKFCDYKTNKSGNLRNHVMTHTGDKPYSCNFCDYKTNKSGNLRNHVMTHTGDKPYSCKFCDYKTNQSSNLKTHVMTHTGDKPHSCKFVISRRLYQAIVSGDLKRHVMTHTGDKPYSCNFCDYKAIQPSNLKKHVMIHTRDKPHSYYYMRSFEYTCHDTQGTSLIASITSGDLKRHVMTHTGDKPYSFEICDYNTIHQSALKIHVMKHKRSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354085;
- 90% Identity
- iTF_01354085;
- 80% Identity
- iTF_01354085;