Basic Information

Insect: Sogatella furcifera
Gene Symbol: -
Assembly: GCA_014356515.1
Location: Scaffold66:2359-13080[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.8 1.1e+03 0.0 0.0 21 48 178 205 168 209 0.81

2 12 0.0013 1.8 9.0 0.0 21 52 206 237 193 238 0.87

3 12 1.6 2.2e+03 -0.9 0.0 22 45 319 342 316 348 0.88

4 12 0.053 75 3.8 0.1 21 44 346 369 339 373 0.86

5 12 0.0068 9.4 6.7 0.4 21 46 374 399 369 405 0.85

6 12 0.0096 13 6.2 0.7 21 47 402 428 398 435 0.85

7 12 0.37 5.1e+02 1.1 0.1 23 49 488 514 484 517 0.76

8 12 0.0054 7.5 7.0 0.2 21 45 514 538 509 546 0.86

9 12 0.15 2e+02 2.4 0.1 14 44 562 593 558 597 0.77

10 12 0.0026 3.6 8.0 0.3 21 45 598 622 590 630 0.84

11 12 0.14 1.9e+02 2.5 0.1 14 44 646 677 641 681 0.77

12 12 0.0025 3.5 8.0 0.5 21 47 682 708 678 715 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.8	1.1e+03	0.0	0.0	21	48	178	205	168	209	0.81
2	12	0.0013	1.8	9.0	0.0	21	52	206	237	193	238	0.87
3	12	1.6	2.2e+03	-0.9	0.0	22	45	319	342	316	348	0.88
4	12	0.053	75	3.8	0.1	21	44	346	369	339	373	0.86
5	12	0.0068	9.4	6.7	0.4	21	46	374	399	369	405	0.85
6	12	0.0096	13	6.2	0.7	21	47	402	428	398	435	0.85
7	12	0.37	5.1e+02	1.1	0.1	23	49	488	514	484	517	0.76
8	12	0.0054	7.5	7.0	0.2	21	45	514	538	509	546	0.86
9	12	0.15	2e+02	2.4	0.1	14	44	562	593	558	597	0.77
10	12	0.0026	3.6	8.0	0.3	21	45	598	622	590	630	0.84
11	12	0.14	1.9e+02	2.5	0.1	14	44	646	677	641	681	0.77
12	12	0.0025	3.5	8.0	0.5	21	47	682	708	678	715	0.86

Sequence Information

Coding Sequence: ATGTCCATAACGGAAAGCAGCAAAGCTTATATTAAAGAAGAGGCTAAGATGAAGCAGGAACATGATTTGAACACTATACAAATCAAAGATGAGATGGAGACGACCGGGCATGAGGAAGAAGGCTACAACACTATCTACCTAAAAGAAGAGGTGCCTTGTGAGAACTTGAAGAAGGCCAAAGCAACTGAAGACCCTCTTCAACTAGATGGAGTATGCAGTGTAACGTCGAGCAGCCAGGGGCTTGATGAATTGGAGACTGGTACAAAATGCAAAGCATCATTGCAAAGTGAACGCACTGCATCTGTTGCCAGTGATCATATCTCACATTGCTCCACCAATCAACAAGATCCATTGCAGTCGTCTGAATGTGAATATTGCATCAATCGTTTCTCAGTGGGCAGCGTCTTCAATTCTAAGACAAAAATTATTGATGGAAATAAGATAACATTCCATTGTGAACATTGTGGTAAACGTTTTATGATGACTGTAGGAAACTTACACACAAAGAGACCCATTAAGAAGCCCCTGAAAGTAGAGAAGCCTTTCCAATGTGAATCTTGTGATAAATCTTTCTCTGAAAAAAGTTACTTGAGAAGTCATTTAAGAATTCACACTGGAGAGAAGCCTTTCCATTGTGAATTCTGTGATAAAGTTTTCTCTGATAAAAATAATTTGAGAAGTCATTTAAGAATTCACACTGGAGAGAAGCCTTACCAGTGTGAATTTTGTGATGAATGTTTCTCTCATAAAGTTTCATTGAATGTTCACATATTTACTCACACTGGAAAGAAGCCTTACCAATGTGAATCTTGTGATAAAAGTTTCTCTCGTAAAATGTCATTAAATAGTCACATATTGACTCACACTGGAGAGAAGCCTTTCCAATGTGAATCCTGTAATAAAAATTACCCAAGTAATGATTCATTGAATAATCACATTAAGACTCATATTGTAGAAAAGCCTTACCATTGTGAATTTTGTAGTAAATGTTTCCTACAAGAAACCCATTTGAATTCCCACTTAAGGTCTCATACTGGAGAGAAGCCTTTCCAATGTGAATTGTGTAGTAAAAGTTTCAGTCAGAAACACTATTTGAAAAGACATTCAAGAATTCACACCGGAGAGAAGCCTTTCCAATGTGAAATTTGTCGAATTTGTTTTACACAAAAACAGTCTTTGAATAAACATTTAAGAACTCATACTGGGGAGAAGCCTTTCCAATGTGAAATTTGTCGAATTTGTTTTGCACAAAAACAGGCTTTGAATAAACATTTAAGAACTCATACTGGGGAGAAGCCTTACCAATGTGAATCTTGTAATAGATCGTTCTGTGACAAATCCACATTGAAAAGTCACATGAAGACTCACCTTATAGAAAAGACTTACCATTGCGAAATTTGTAGTAAATGTTTCTCACATTTATCCTATTTGAATTGCCACTTAAAAACTCATACTGGAGAGAAGACTCTGCAATGTGAATTTTGTAGTAAATTTTTCTTACGCAAATCTAATTTGAGAATACATTTGAGAATTCACACTGGAGAGAAGCCTTTCCAATGTGAAATTTGTAGTAAAAGTTTCTCACAAGAACCCCATTTGAAGAGACATTTAATAACTCATTCCGGAAAGAAGCCTTTCCAATGTGAATTATGTGACAAATGTTTCTCCGATAAAAATACTTTGAAAATTCATTCAAGAACTCACACTGGAGAGAAGCCTTTCCAATGTGAAATCTGTGACAAATGTTTTTCTGATAAAAATATTTTGAAATGTCATTTAAGAACTCACACTGAAGAGAAGCCTTTCCAATGTGAAATTTGTAGTGAAAGTTTCTCACAAAAATCCCATTTGAAGAGACATTTAATAACTCATTCTGGAAAGAAGCCTTTCCAATGTGAATTTTGTGACAAATGTTTCTCTGATAAAAATACTTTGAAAATTCATTCAAGAACTCACACTGGAGAGAAGCCTTTCCAATGTGAAATCTGTGACAAATGTTTTTCTGATAAAAATATTTTGAAATGTCATTTAAGAACTCACACTGGAGAGAAGCCATTCCAATGTGAAATTTGTAGTAAATGTTTCTCACAAGAACCCCATTTGAAGAGACATTTAAGAACTCATTCTGGAGAGAAGCCTTTCCTATGTGAATCTTGTAATAGATGTTTCTCTGATAAACCCACATTGAATAACCATATTATGAAGACTCATTCTTGA
Protein Sequence: MSITESSKAYIKEEAKMKQEHDLNTIQIKDEMETTGHEEEGYNTIYLKEEVPCENLKKAKATEDPLQLDGVCSVTSSSQGLDELETGTKCKASLQSERTASVASDHISHCSTNQQDPLQSSECEYCINRFSVGSVFNSKTKIIDGNKITFHCEHCGKRFMMTVGNLHTKRPIKKPLKVEKPFQCESCDKSFSEKSYLRSHLRIHTGEKPFHCEFCDKVFSDKNNLRSHLRIHTGEKPYQCEFCDECFSHKVSLNVHIFTHTGKKPYQCESCDKSFSRKMSLNSHILTHTGEKPFQCESCNKNYPSNDSLNNHIKTHIVEKPYHCEFCSKCFLQETHLNSHLRSHTGEKPFQCELCSKSFSQKHYLKRHSRIHTGEKPFQCEICRICFTQKQSLNKHLRTHTGEKPFQCEICRICFAQKQALNKHLRTHTGEKPYQCESCNRSFCDKSTLKSHMKTHLIEKTYHCEICSKCFSHLSYLNCHLKTHTGEKTLQCEFCSKFFLRKSNLRIHLRIHTGEKPFQCEICSKSFSQEPHLKRHLITHSGKKPFQCELCDKCFSDKNTLKIHSRTHTGEKPFQCEICDKCFSDKNILKCHLRTHTEEKPFQCEICSESFSQKSHLKRHLITHSGKKPFQCEFCDKCFSDKNTLKIHSRTHTGEKPFQCEICDKCFSDKNILKCHLRTHTGEKPFQCEICSKCFSQEPHLKRHLRTHSGEKPFLCESCNRCFSDKPTLNNHIMKTHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01353953;
90% Identity: iTF_01353953;
80% Identity: iTF_01353953;