Sfur002957.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr5:10330521-10344476[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.025 34 4.9 0.0 23 52 184 213 180 215 0.85 2 13 0.005 7 7.1 0.0 21 52 210 241 207 243 0.87 3 13 0.0048 6.8 7.1 0.0 21 52 238 269 234 271 0.87 4 13 0.005 6.9 7.1 0.0 21 52 266 297 263 299 0.87 5 13 0.005 7 7.1 0.0 21 52 294 325 291 327 0.87 6 13 0.0052 7.3 7.0 0.0 21 52 322 353 320 355 0.87 7 13 0.0052 7.2 7.0 0.0 21 52 350 381 348 383 0.87 8 13 0.0052 7.2 7.0 0.0 21 52 378 409 376 411 0.87 9 13 0.005 7 7.1 0.0 21 52 406 437 403 439 0.87 10 13 0.25 3.4e+02 1.7 0.0 21 44 434 457 432 465 0.87 11 13 0.36 5e+02 1.2 0.0 22 44 463 485 458 492 0.87 12 13 0.35 4.9e+02 1.2 0.0 21 45 546 570 537 577 0.81 13 13 0.36 5.1e+02 1.1 0.4 22 48 575 601 570 604 0.74
Sequence Information
- Coding Sequence
- ATGGACATGGATGACAGCCAGTACAAAGAGGCGGTCGAGTCAATGTTAATTGGGGATTCCAAGACAACCTTGGCTTGCCAGGAGAGAGATCAAGCGTCAGAGTACAATGAAATAGGTTCCACCATATGGATAAAACAGGAAGAAGTGTGTGATTCCCAGTCGATTGAAGAATGTGCTGTTGATGCAGGATTTGAAGACAGCAGGGACAGATTGAGTTTGATTTCTGCAGAAGGAGACAGCATTCAGTCTGAAAATGTCACAAATGAACAATTAGTGTGTGTTGAAAATACCAAACCGACAACAGCTCCCAAGAATAATCAGCCAACTGATCAAGATCTCCAGGATTCTCATAGATGTGCTCATTGTAGCTATCAATCTCCGATAATGAGTAGTTTGCTGAGACACATTAGAAGAACTCATTCTACCAAGGGAAACAGTGATCTTTCTCACCACAACCACAATGACATTACATTCAACAAGGAACAAAAAAATGAGTTCTGTGATTACAAGACTTCTCATTCAAGCATTTTCATGACACACAAAGGGTACAAACCTCATATCTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCATTGAAGAGACATGTTATGATACATACCGGGGAGAAGCCTTACGTTTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCATTGAAGAGACATGTTATGATACATACCGGGGAGAAGCCTTACGTTTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCATTGAAGAGACATGTTATGATACATACCGGGGAGAAGCCTTACGTTTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCATTGAAGAGACATGTTATGATACATACCGGGGAGAAGCCTTACGTTTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCATTGAAGAGACATGTTATGATACATACCGGGGAGAAGCCTTACGTTTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCATTGAAGAGACATGTTATGATACATACCGGGGAGAAGCCTTACGTTTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCATTGAAGAGACATGTTATGATACATACCGGGGAGAAGCCTTACGTTTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCATTGAAGAGACATGTTATGATACATACCGGGGAGAAGCCTTACGTTTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCATTGAAGAGACATGTTATGATACATACCGGGGAGAAGCCTTACGTTTGTGAGTTTTGTGATTATAAGACCAATCAATCAAGTGCTTTAAAGACACATGTCATGTCACACACAGGGGACAAACCTCACAACTGTGAGTTTTGTGATTATAAGACCACTAAATCAAGTCATCTGAAGAGACATGTCATGACACACACAGGAGAGAAAACTTATGTATGTGTTTTTTGTGATTATAAGACCACTACATCATGTTATTTGAAAAGACATGTCATGACACACACAGGGAAGAAAACATACATCTGCGATTTCTGTGATTATAGGACCACTACATCAAATGCTTTGAAAACACATGCCAGGACACACACAGGTGACAAACCTTATATTTGTGAGTTTTGTGGTCACAAGACCACTAAATCAAGTAATTTGAAGATTCATATCAGGACACACACAGGGGACAAACCTTACAAATGTGAGTATTGTGATTATAGGACCATTACATCAAGTCATTTAAAGAGACATCTCATCAGGTCACATGCAAACAGCCATTCTTAA
- Protein Sequence
- MDMDDSQYKEAVESMLIGDSKTTLACQERDQASEYNEIGSTIWIKQEEVCDSQSIEECAVDAGFEDSRDRLSLISAEGDSIQSENVTNEQLVCVENTKPTTAPKNNQPTDQDLQDSHRCAHCSYQSPIMSSLLRHIRRTHSTKGNSDLSHHNHNDITFNKEQKNEFCDYKTSHSSIFMTHKGYKPHICEFCDYKTNQSSALKRHVMIHTGEKPYVCEFCDYKTNQSSALKRHVMIHTGEKPYVCEFCDYKTNQSSALKRHVMIHTGEKPYVCEFCDYKTNQSSALKRHVMIHTGEKPYVCEFCDYKTNQSSALKRHVMIHTGEKPYVCEFCDYKTNQSSALKRHVMIHTGEKPYVCEFCDYKTNQSSALKRHVMIHTGEKPYVCEFCDYKTNQSSALKRHVMIHTGEKPYVCEFCDYKTNQSSALKRHVMIHTGEKPYVCEFCDYKTNQSSALKTHVMSHTGDKPHNCEFCDYKTTKSSHLKRHVMTHTGEKTYVCVFCDYKTTTSCYLKRHVMTHTGKKTYICDFCDYRTTTSNALKTHARTHTGDKPYICEFCGHKTTKSSNLKIHIRTHTGDKPYKCEYCDYRTITSSHLKRHLIRSHANSHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353981;
- 90% Identity
- iTF_01353981;
- 80% Identity
- iTF_01353981;