Sfur002799.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr5:3105296-3106816[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0063 8.8 6.8 0.0 21 45 38 62 30 70 0.86 2 12 0.36 5.1e+02 1.1 0.0 22 44 67 89 63 97 0.85 3 12 0.05 70 3.9 0.0 22 45 112 135 104 143 0.85 4 12 0.36 5.1e+02 1.1 0.0 22 44 140 162 136 170 0.85 5 12 0.33 4.6e+02 1.3 0.0 23 45 169 191 165 198 0.85 6 12 0.02 28 5.1 0.0 22 44 196 218 192 222 0.90 7 12 0.02 28 5.1 0.0 22 44 224 246 220 250 0.90 8 12 0.0068 9.5 6.7 0.0 22 44 252 274 247 279 0.90 9 12 0.0046 6.4 7.2 0.0 22 45 280 303 275 311 0.86 10 12 0.0072 10 6.6 0.0 22 44 308 330 304 334 0.90 11 12 0.28 3.9e+02 1.5 0.0 22 44 347 369 332 377 0.84 12 12 0.32 4.5e+02 1.3 0.0 23 45 376 398 371 405 0.85
Sequence Information
- Coding Sequence
- ATGTTAAGACACATTAGGAAGAATCATTCTTCTGGGGGTGGGAAAAACCTTGTTCACTGTAACTCCCATGAAATTAGAATCGACAAAAAGAAACATGGAATTACACATAAAGGGGACAAGCCTCACAGCTGTAAGTTTTGTGATTATAAGACAAATCAATCAGGTAATTTGAAGAAACATGTCATGACACACACAGGGGACAAGCCTTACAGCTGTAGGTTTTGTGATTATAAGACTAATGAATCAGGTTCTTTAAAGAGACATGTCATGACACACACAGGGTACAAACCTTACAGCTGTCATTTGAAGAAACATGTCATGACACACACAGGGGACAATCCTTACAACTGTAAGTTTTGTGATTATAAGACAAATCAATCAGGTAATTTGAAGACACATGTCATGACACACACAGGGGACAAACCTTACAGCTGTAGGTTTTGTGATTATAAGACTAATGAATCAGGTTCTTTAAAGAGACATGTCATGACACACACAGGGTACAAACCTTACAGCTGTAAGTTTTGTGATTATAAGGCTAATCAATCAGGTCATTTGAAGAAACATGTCATGACACACACAGGGGACAAGCCTTACAACTGTAAATTTTGTCATTATAAGACTAATCAATCAGGTAATTTGAAGACCCATGTCATGACACACACAGGGGACAAGCCTTACAACTGTAAATTTTGTCATTATAAGACTAATCAATCAGGTAATTTGAAGACCCATGTCATGACACACACAGGGGACAAGCCTTACAACTGTAAATTTTGTCATTATAAGACTAATCAATCAGGTAATTTGAAGAAACATGTCATGACACACACAGGGGACAAGCCTTACAACTGTAAATTTTGTCATTATAAGACTAATCAATCAGGTAATTTGAAGAAACATGTCATGACACACACAGGGGACAAGCCTTACAACTGTAAATTTTGTCATTATAAGACTAATCAATCAGGTAATTTGAAGAAACATGTCATGACACACACAGGTAATTTGAAGAAACATGTCATGACACACACAGGGGACAAGCCTTACAGCTGTAGGTTTTGTGATTATAAGACTAATGAATCAGGTTCTTTAAAGAGACATGTCATGACACACACAGGGTACAAACCTTACAGCTGTAAGTTTTGTGATTATAAGGCTAATCAATCAGGTCATTTGAAGAAACATGTCATGACACACACAGGGGACAAGCCTTACAACTGT
- Protein Sequence
- MLRHIRKNHSSGGGKNLVHCNSHEIRIDKKKHGITHKGDKPHSCKFCDYKTNQSGNLKKHVMTHTGDKPYSCRFCDYKTNESGSLKRHVMTHTGYKPYSCHLKKHVMTHTGDNPYNCKFCDYKTNQSGNLKTHVMTHTGDKPYSCRFCDYKTNESGSLKRHVMTHTGYKPYSCKFCDYKANQSGHLKKHVMTHTGDKPYNCKFCHYKTNQSGNLKTHVMTHTGDKPYNCKFCHYKTNQSGNLKTHVMTHTGDKPYNCKFCHYKTNQSGNLKKHVMTHTGDKPYNCKFCHYKTNQSGNLKKHVMTHTGDKPYNCKFCHYKTNQSGNLKKHVMTHTGNLKKHVMTHTGDKPYSCRFCDYKTNESGSLKRHVMTHTGYKPYSCKFCDYKANQSGHLKKHVMTHTGDKPYNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354049;
- 90% Identity
- iTF_01354049;
- 80% Identity
- iTF_01354049;