Basic Information

Insect: Sogatella furcifera
Gene Symbol: -
Assembly: GCA_014356515.1
Location: chr7:13316659-13322691[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0015 0.079 13.7 0.8 2 23 78 99 73 99 0.89

2 15 2.7 1.4e+02 3.5 1.7 2 19 105 122 104 125 0.81

3 15 0.00014 0.007 17.0 2.4 2 23 140 161 139 161 0.96

4 15 0.004 0.21 12.3 0.4 2 23 165 187 164 187 0.94

5 15 0.15 7.7 7.4 1.9 2 23 197 219 196 219 0.93

6 15 5e-05 0.0026 18.3 0.8 2 23 226 247 225 247 0.96

7 15 0.0011 0.059 14.1 1.6 1 23 252 274 252 274 0.97

8 15 0.16 8.5 7.3 0.1 1 23 277 300 277 300 0.86

9 15 0.0014 0.07 13.8 7.0 1 23 309 331 309 331 0.98

10 15 0.00053 0.027 15.1 0.1 1 21 337 357 337 362 0.93

11 15 0.33 17 6.3 6.1 1 20 372 391 372 393 0.88

12 15 5.9e-05 0.003 18.1 0.9 2 23 403 424 402 424 0.97

13 15 0.00044 0.023 15.4 1.7 1 23 430 453 430 453 0.94

14 15 0.00079 0.041 14.6 0.3 1 20 459 478 459 481 0.95

15 15 0.0026 0.13 13.0 1.6 5 23 490 509 479 509 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0015	0.079	13.7	0.8	2	23	78	99	73	99	0.89
2	15	2.7	1.4e+02	3.5	1.7	2	19	105	122	104	125	0.81
3	15	0.00014	0.007	17.0	2.4	2	23	140	161	139	161	0.96
4	15	0.004	0.21	12.3	0.4	2	23	165	187	164	187	0.94
5	15	0.15	7.7	7.4	1.9	2	23	197	219	196	219	0.93
6	15	5e-05	0.0026	18.3	0.8	2	23	226	247	225	247	0.96
7	15	0.0011	0.059	14.1	1.6	1	23	252	274	252	274	0.97
8	15	0.16	8.5	7.3	0.1	1	23	277	300	277	300	0.86
9	15	0.0014	0.07	13.8	7.0	1	23	309	331	309	331	0.98
10	15	0.00053	0.027	15.1	0.1	1	21	337	357	337	362	0.93
11	15	0.33	17	6.3	6.1	1	20	372	391	372	393	0.88
12	15	5.9e-05	0.003	18.1	0.9	2	23	403	424	402	424	0.97
13	15	0.00044	0.023	15.4	1.7	1	23	430	453	430	453	0.94
14	15	0.00079	0.041	14.6	0.3	1	20	459	478	459	481	0.95
15	15	0.0026	0.13	13.0	1.6	5	23	490	509	479	509	0.90

Sequence Information

Coding Sequence: ATGCTGGGTGCGATAGCGGAGCTAGATACTAAGGAGCAATCGGAAGCTTATAACTATCTTCAAAAATGTGTCAATTATATGGAAGTAGAAGATAACCTACCCAACTCAGGATGTTTAGAGACTGATGACTGTAATTCTATTTCAAATGACTCGGGTTATCTAGACAATAACAAAGGAACCACTGAAACAGAGACTGATAGTAATTTAGTAACTGGATACGAGTGCAACAAGTCATGTTCAATATGCGGCTTGATTTTTACATCGGTCGATGATCTTTTCAGACACAGCGCACAGCACAAGGAGTACATTATCAGCTGCTATAATTGTAGGAAGTCATTCTGTTCGACAGATATCTTTGAAATACACAAGAAATTGAAAGTTTGCTCGAAAGACTCACAGAGTTGGGCTGGCAAATTGAAATGCACGCTTTGTGATCGGAACTTCACGAATCCTCAACATTATTCACTGCATATGAAGGGTCACGAGAGGAATAAATGCACAGTGTGTGGCGCCAATTTGAATTCCAGAAAACTGCTCGAAAAGCATATGACGGAATTGCACAATACTAAACCAGAAAAAATGTATTTGAAGTGCCTATTTTGCGATATGAAGTTTGTACAGAAACGATCTCGTTTGAATCATTACAAAGCATACCATAAAGAAGAAACATCGTTAATTTGTTTTATTTGTGATACTGTCTTCAATACAAAAGAAAATTTGGATAACCACACGAAGAAACATATAATTAAGACGTTCAAATGCGAATTATGCAGTGCTACATTCAGTAGACGACAGCAATATCTGACCCACGTCAAGGATCATAACAAGTATTTGTGCGTGACCTGTGGAAAATCGTACCCGAATTTGAAAATTTTGGAGCAACACGAACAAGATGGCCACATTATAGATGGACTAGAGATGCAGTACAATTGTTCAGAATGTAATAGAGCCTTCCATTTTCACTCCAGCCTGTTCTATCACATGAAAACACATGCAAATGAGAAGACCTTCTCTTGTCAAGAATGTGGCTCGGTTTTCAAGAATAATGTTGATTACAAAATACATATAAGTTCAGTTGATGCACATGTTAAAGATCTAGTTCCTACAAAAGTGTTTGAGTGCACGTATTGCAGCAAAACGTTCACTGTCAAACGAAAATTGCACTGTCATCAGTTCAAGTGCAAATTGAAGAAAACCACCGCTATTTCATGTGAAATTTGCGACTTCAAAACTAGTTTCAAATCCAATCTAAAAGATCACATGGATACACATTCAGATAAAAAACGGTTCATTTGTGAAAAATGCGGGAATGTATTTTGTTCAAGGAACCAGTTGACCGAGCATTTGACCTATATTCATTCGGATGAGCGGAATTTTAGTTGTGAGAAATGTGGACAAACCTTCAAAGCGGCCAACGTGTTGAATAGGCATATGGCGTGTCACACCGATGAGAAGAACCACCAATGCCATTGTGGTCTAGCGTATAAGCTGAAAAGTAACCTCAGAAGACATCAGATGTTAGCTCATGGTTGTCCCACACCGAAACGCGCCAAAAAGATGCTGGCTGCCGGCGAGAGTTTGGACAATATTGGGAAAACAACGAATCGAAAAACCAAGGGTGAAGAAGTGGTGTTAGTTGACAATAATGTGACAGATACAGTATACAATCTGTTAGACTCGCAGTATCTCGCCGAACCGAGCATGATGCTACCGAACGGACAAGTGGACAGTCAGATGTTACAAGTGTCATACCCGGGTATGAGTTATGTGCCTGAAAACAAGAGTCAACACCTAGTTTACAGTCAGTCGCTGGACATTGATAATCTACATGTGGTGGAAACGATGCTGCAGTCGGATGACTCGCTGAAAAACGGTGCGGGTGTGTTGGTCGACGCCGGACACTCTGTGATGTTCGACCGACAGTTGAATGAGCATGGCTATCACGACGGCTTGCTGCATCCGCCAATTGAACCGTCGCTGGTCACCAGTCTGGGAGATGCTCATCATCTGACAGTATCATCAGCCGCCGGCCAGCAAAATCTCATCAACTCTCTGCCCGATTATGTACCGCATAATTTCCCTTTTCTCAACATGTAA
Protein Sequence: MLGAIAELDTKEQSEAYNYLQKCVNYMEVEDNLPNSGCLETDDCNSISNDSGYLDNNKGTTETETDSNLVTGYECNKSCSICGLIFTSVDDLFRHSAQHKEYIISCYNCRKSFCSTDIFEIHKKLKVCSKDSQSWAGKLKCTLCDRNFTNPQHYSLHMKGHERNKCTVCGANLNSRKLLEKHMTELHNTKPEKMYLKCLFCDMKFVQKRSRLNHYKAYHKEETSLICFICDTVFNTKENLDNHTKKHIIKTFKCELCSATFSRRQQYLTHVKDHNKYLCVTCGKSYPNLKILEQHEQDGHIIDGLEMQYNCSECNRAFHFHSSLFYHMKTHANEKTFSCQECGSVFKNNVDYKIHISSVDAHVKDLVPTKVFECTYCSKTFTVKRKLHCHQFKCKLKKTTAISCEICDFKTSFKSNLKDHMDTHSDKKRFICEKCGNVFCSRNQLTEHLTYIHSDERNFSCEKCGQTFKAANVLNRHMACHTDEKNHQCHCGLAYKLKSNLRRHQMLAHGCPTPKRAKKMLAAGESLDNIGKTTNRKTKGEEVVLVDNNVTDTVYNLLDSQYLAEPSMMLPNGQVDSQMLQVSYPGMSYVPENKSQHLVYSQSLDIDNLHVVETMLQSDDSLKNGAGVLVDAGHSVMFDRQLNEHGYHDGLLHPPIEPSLVTSLGDAHHLTVSSAAGQQNLINSLPDYVPHNFPFLNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00857909;
90% Identity: -
80% Identity: -