Lstr000256.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025327.1:10912525-10919831[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00096 0.11 14.3 0.6 2 19 106 123 105 127 0.92 2 15 0.29 35 6.4 2.2 2 21 133 152 132 153 0.90 3 15 0.00014 0.016 16.9 2.4 2 23 168 189 167 189 0.96 4 15 0.0028 0.33 12.8 0.2 2 23 193 215 192 215 0.96 5 15 0.038 4.5 9.2 3.4 2 23 225 247 224 247 0.96 6 15 6.6e-06 0.00078 21.1 0.5 2 23 254 275 253 275 0.96 7 15 0.01 1.2 11.0 3.9 1 23 280 302 280 302 0.97 8 15 0.039 4.6 9.2 0.1 1 23 305 328 305 328 0.89 9 15 0.00096 0.11 14.3 7.2 1 23 337 359 337 359 0.98 10 15 0.00029 0.034 15.9 0.1 1 22 365 386 365 390 0.93 11 15 1.4 1.6e+02 4.3 6.1 1 20 400 419 400 421 0.87 12 15 0.0015 0.18 13.6 1.0 2 23 431 452 430 452 0.96 13 15 0.00016 0.019 16.7 1.7 1 23 458 481 458 481 0.95 14 15 0.00079 0.094 14.5 0.3 1 20 487 506 487 509 0.95 15 15 0.00064 0.076 14.8 1.6 5 23 518 537 507 537 0.91
Sequence Information
- Coding Sequence
- ATGAGCTGCAAAGATAGTGATAGTACAAAAAGAGTGAAGAAGAAAATGAGCATATCCGATATAAAAAACCAGGTCGCCAACATGTTGGGTGCGATAGCAGAGCTAGATTCTAAAGAGCAATCAGAGGCTTACAACTATCTTCAAAAATGTGTTATTAAATTGGAAGTAGACGACAGTCTTCCTCCTTCTGACTCAGGTTGCTTAGAGACTGATGACTGTAATTCTATGTCAAATGACTCCGGCTATTTGGACAATAATAAAGGAACCACTGAAGCAAAGACTGATGATAACATTAGCAATTTAGTAACCGGAAGCACGTGTTCAATATGCGGCTTGATTTTTACAACGGCCGATGACCTTTTAAAACACTGCGCTCAACATAAGGAATACAATATGAGCTGCTACAATTGTAAGAAGTCATTTTGTTCAACTGATGTCTTTGAAATACACAAGAAATTGAAAGTTTGTTCGAAAGACACGCAGAGTTGGGCTGATAAATTGAAATGCACGTTATGCGACCGTAATTTCACAAATCCTCAACATTATTCGCTGCATATGAAGGGCCACGAAAGGAATAAATGCACAGTATGTGGCGCCGATTTGAATTCCAGAAAGCTGCTTGAAAAGCATATGATGGAGTTGCACAATACAAAACCAGAGAAGATCTATTTGAAGTGTCTATTTTGCGATATGAAGTTTGTACAGAAACGATCTCGTTTGAAACATTATAAAACATTCCATAGAGAGGAAGCATCGTTGATTTGTTTCATTTGTGGTACTGTTTTTAATACAAAGGAAAATTTGGAAAACCACTCGAAGACGCATGATATTAAGACGTTCAAATGTGAATTATGCAGTGCCACATTTTGCAGACGACAGCAATATTTGACGCACGTCAAGGATCATAATAAATATTTGTGTGTAACCTGTGATAAATCGTATCCAAATTTGAAAGTTTTGGAGCAACACGAACAAGACGGCCACATTATAAGTGGACTACAAATGCAGTACAATTGTTCAGAATGTAACAGAGTCTTCCATTTTCACTCCAGTCTGTTCTATCACATGAAAACACATGCAAATGAGAAGACCTTCTCTTGCCAAGAGTGTGGCTCAGTTTTCAAGAATAGTGTTGACTACAAGATACATATCAATTCAGTTGACGCGCATGTCAAAGATCTAGTTCCTACAAATGTTTTCGAGTGCACGTACTGCAGCAAACAGTTCACCGTCAAACGAAAACTGCACTGTCATCAGTTCAAGTGCAAATCCAAGAAAACCGTTGTTCTATCGTGTGAAGTTTGCGAGTTTAAAACTAGTTTCAAGTCCAAGTTGAAAGAGCACATGAATATACATTGGAAAAACAAACGGTTCATTTGTGAGAAATGCGGGAATGTTTTCTGTTCGAGGAACCAGTTGACTGAACATTTAAACTATATACATTCGGATGAGAGAAATTTTAGTTGTGAAAAATGTGGACAAACCTTCAAAGCGGCCAATGTGTTGAATAGGCATATGGCGTGTCATTCCGATGAAAAAAACCACCAGTGCCATTGTGGACAAGCGTACAAGTTGAAAAGTAACCTCAGGAGACATCAGATGGTAGCTCATGGCTGTGTTACACCGAAACGCGCTAAGAACATGTTGGCTGCCGGGGAGAGTTTGGGCAAAAAACAGCAAATTAAGGGTAATGAGGTTGTGTTAGATGATAGCAATGTGACAGATACCGTTTACAATTTGTTAGATCCGCAGTATCTTGCCGAACCGAACATGATGCTACCGAACGGGCAAGTGGACAATCAGATGCTACAAGTATCGTACCCGGGTATGAGTTATGTGCCTGAAAACAAAAGCCAACACCTAGTTTTCAGTCAATCGTTGGACATTGACAACTTACACGTGGTGGAGACAATGCTGCAATCTGATGCGTCTCCGGGTGACGCCAGCCATTCGGTGATGTTCGACAGACACGGGCTGAGCGAGCATGAAGCAGCCGCTTATCACCACTTATCACCCACTGATGGCGGCGGCTTTATTCATCCACCAATTGAACCTTCGCTCGTCACAAGTTTGGGCGACGCCGATCTGGCCGTGTCATCTGCCGCCACTCAACAAAGTCTCATCAATGCTTTGCCTGATTATCTACCTCATAATTTTCATTTTCTCAACATGTAG
- Protein Sequence
- MSCKDSDSTKRVKKKMSISDIKNQVANMLGAIAELDSKEQSEAYNYLQKCVIKLEVDDSLPPSDSGCLETDDCNSMSNDSGYLDNNKGTTEAKTDDNISNLVTGSTCSICGLIFTTADDLLKHCAQHKEYNMSCYNCKKSFCSTDVFEIHKKLKVCSKDTQSWADKLKCTLCDRNFTNPQHYSLHMKGHERNKCTVCGADLNSRKLLEKHMMELHNTKPEKIYLKCLFCDMKFVQKRSRLKHYKTFHREEASLICFICGTVFNTKENLENHSKTHDIKTFKCELCSATFCRRQQYLTHVKDHNKYLCVTCDKSYPNLKVLEQHEQDGHIISGLQMQYNCSECNRVFHFHSSLFYHMKTHANEKTFSCQECGSVFKNSVDYKIHINSVDAHVKDLVPTNVFECTYCSKQFTVKRKLHCHQFKCKSKKTVVLSCEVCEFKTSFKSKLKEHMNIHWKNKRFICEKCGNVFCSRNQLTEHLNYIHSDERNFSCEKCGQTFKAANVLNRHMACHSDEKNHQCHCGQAYKLKSNLRRHQMVAHGCVTPKRAKNMLAAGESLGKKQQIKGNEVVLDDSNVTDTVYNLLDPQYLAEPNMMLPNGQVDNQMLQVSYPGMSYVPENKSQHLVFSQSLDIDNLHVVETMLQSDASPGDASHSVMFDRHGLSEHEAAAYHHLSPTDGGGFIHPPIEPSLVTSLGDADLAVSSAATQQSLINALPDYLPHNFHFLNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354042;
- 90% Identity
- -
- 80% Identity
- -