Sfur005119.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr2:25576887-25583275[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5e-05 0.00077 20.0 2.3 1 23 146 169 146 169 0.97 2 13 0.0032 0.16 12.7 0.2 1 22 174 195 174 197 0.90 3 13 0.00084 0.043 14.5 0.4 1 23 202 227 202 227 0.97 4 13 4.3e-05 0.0022 18.5 4.7 2 23 231 253 230 253 0.97 5 13 2.8e-06 0.00014 22.3 0.6 1 23 258 281 258 281 0.97 6 13 1.1e-05 0.00058 20.4 3.5 2 23 287 309 286 309 0.97 7 13 1.2e-05 0.00062 20.3 1.7 1 23 314 337 314 337 0.92 8 13 7e-06 0.00036 21.0 0.9 1 23 342 365 342 365 0.95 9 13 0.0038 0.2 12.4 0.2 1 23 370 393 370 393 0.96 10 13 0.00011 0.0059 17.2 0.2 1 23 398 421 398 421 0.92 11 13 6.2e-06 0.00032 21.2 0.5 1 23 427 450 427 450 0.94 12 13 8e-06 0.00041 20.9 3.1 1 23 455 478 455 478 0.96 13 13 0.00015 0.0075 16.9 2.8 1 21 483 503 483 504 0.95
Sequence Information
- Coding Sequence
- ATGGATACTGATATTGAAATAAAGTTTGAAGAAGTTGAGATTGAAAAACAACAAATCAGTGACGAACAAGATTCAAATAATAATGAGGAAGAAAATGTTGCCTTAACATCTCCGTTGGATATTAATGAAGCAGAAGAGACAAATAACAATGATAATATCGCTGATAGGAGAAGCAGTTTGAGATCAAGGAAAAATTTCGTATCATACTTTGAAAATGACATCCAAAATATGAGACGCTGTTCCAGGGCATCATCAAGGAAGAAATCGAAAGATGTCGACCAAGCAGTCCAAGGCAATTTGAATTTCTCGAATGCAGCTACCACTTTTGTTTTAGGAAAAGCCAATTTGAATGCGAACATCGACGCTTTTTTGCAGAAGTTCTCGGACGAGTCTTGTGTGGGCCATCTACCAGGGCCTGACAGCCAGGCAGTCGAATATGAGTGTGATATGTGCAATCAAGGTTTCAAGAGCAAGAATCACCTCCGCGAACACATCAAGTTGACCCACTGCGACGTTGTTTATGAGTGCGGATTCTGTCAGGAACCATTTAACAGCCGCGAAAGTTTAATTGAGCACGTTGATTTTATGCATCTGGAGTTAAAATTCGAATGTTCATTCATCAATTGTGATGAGAAATTTGTCCGTGAATCTGATAAAACAGCGCACTTGAAAACAGTTCACAAGCAATTGAAATGTCCTCAATGTGATAAGACGTTCAGACATGAAAGTGGCCTATTAACACACAATCGGACGTGTCATTTGGGCATGAGGTTTGTCTGTTTGATTTGCAATGTCACATTCACACAAAAATCAAATTTAAAAATGCATACTGAAACAATCCATGATAAAGTCAGGGTGCGTTGTAAATTGTGTAAAAAAACATTCACAAGTAAACCTCACTTGAGAATTCACACAAGATCAATTCACTTGAAAATAAGGCATTCGTGTGACATGTGTCCTAAAACGTTTTCTCAGAAAGGTGCCTTGCAGCAACATATTGTTCATGATCATTCAGGTTTAAAATTCATTTGTGACTATTGTAATAAATCTTTCAACAAGAAATCTAGACTTGCAAATCACATACAACTTATCCATGAAGGTAAGAGATACACATGTGATATATGTGGTTTGACTTTTGGTTGGAAATTGAGTCTGAGGCAGCATCTTCAAAATATACACCAGGGAATACGATATCCTTGCAACGAATGTGGAAAGAGTTATAGGGAAAAGCAACGCCTCAATCAACATGTAGCTCTGGTACATCTCGGTATCCACAAATACAAGTGTGACCTGTGCAACATCAGTTTCAGCCAGTCGGGTAACCTTAGGCAACACAATCTTTCTGTTCATATCGGACGAAGATTCGAATGTCATTTCTGTGATCAGAAATTCAAACAGAAAGACGGCCTAAGGAAGCATATAGAAATATTTCATCAAGCCATTATCTATACATGTAATGATTGCAATAACACTTTCACTTCCAGAAAAGCTTTAAAAAACCACCTGTGCAATTCGAGTGAACAAAATGACAATACCAAAGTTGAAAACTAA
- Protein Sequence
- MDTDIEIKFEEVEIEKQQISDEQDSNNNEEENVALTSPLDINEAEETNNNDNIADRRSSLRSRKNFVSYFENDIQNMRRCSRASSRKKSKDVDQAVQGNLNFSNAATTFVLGKANLNANIDAFLQKFSDESCVGHLPGPDSQAVEYECDMCNQGFKSKNHLREHIKLTHCDVVYECGFCQEPFNSRESLIEHVDFMHLELKFECSFINCDEKFVRESDKTAHLKTVHKQLKCPQCDKTFRHESGLLTHNRTCHLGMRFVCLICNVTFTQKSNLKMHTETIHDKVRVRCKLCKKTFTSKPHLRIHTRSIHLKIRHSCDMCPKTFSQKGALQQHIVHDHSGLKFICDYCNKSFNKKSRLANHIQLIHEGKRYTCDICGLTFGWKLSLRQHLQNIHQGIRYPCNECGKSYREKQRLNQHVALVHLGIHKYKCDLCNISFSQSGNLRQHNLSVHIGRRFECHFCDQKFKQKDGLRKHIEIFHQAIIYTCNDCNNTFTSRKALKNHLCNSSEQNDNTKVEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857867;
- 90% Identity
- -
- 80% Identity
- -