Lstr026297.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025322.1:19538477-19543397[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8e-05 0.0033 19.1 2.6 1 23 151 174 151 174 0.97 2 13 0.00049 0.059 15.2 0.2 1 23 179 202 179 202 0.93 3 13 0.0064 0.76 11.7 0.4 1 23 207 232 207 232 0.97 4 13 2.7e-05 0.0032 19.1 2.7 2 23 236 258 235 258 0.96 5 13 6e-05 0.0071 18.1 0.3 1 23 263 286 263 286 0.93 6 13 6.6e-06 0.00078 21.1 2.4 2 23 292 314 291 314 0.96 7 13 3.7e-06 0.00044 21.8 0.5 1 23 319 342 319 342 0.94 8 13 1.3e-05 0.0015 20.2 1.0 1 23 347 370 347 370 0.96 9 13 0.0015 0.18 13.6 0.2 1 23 375 398 375 398 0.96 10 13 4.8e-05 0.0057 18.3 0.2 1 23 403 426 403 426 0.94 11 13 4.4e-05 0.0052 18.5 2.0 1 23 432 455 432 455 0.94 12 13 0.00018 0.021 16.6 6.0 1 23 460 483 460 483 0.95 13 13 6.3e-05 0.0075 18.0 3.0 1 21 488 508 488 509 0.95
Sequence Information
- Coding Sequence
- ATGTCAAAAGAGCCAGCAATGGATACTGATCTAATAACGTGTGAGGAAATTAAGATTGACAATCAACAAATTAGCGATGAACAAGATCCACATGTTAATGAAGAAAAGGATCCTGCCGTCACATCTTTGTTAGATAATGACGAAGAAGGAAAAATAAATTACAATAATAAAATCGCAAATAGAAGAAGCAGTCTGCGTTCGAGGAAAAACATCGTATCGTATTTTGAAAATGCAATACAAAGCATAAGACGCTGTTCCATGGCATCATCTAAAAAGAAATCGAAAAATGTCGACCAAGTAGTCCAAGGCAGTTTGAATTTCTCGAATGCAGCTACAACTTTCGTTTTAGGAAAAACTCATTTGAATGCGAACATTGATGATTTCCTGAAAAAATTCTCGGACGAGTCTTGTGTGGGCCAGCTACCAGGGCCTGACAGTCAGGCAGTCGAATATGAGTGCGACATGTGCAATCAAGGTTTCAAGAGTAAGAATCACCTTCGCGAGCACGTCAAGTCGACCCACTGCGATGTTGTTTATGAGTGCGGATTCTGTCAGGAGCCATTCAACAGCCGCGAAAGTTTAATTAAGCACGTTGATTATGTGCATCTGGAATTGAAGTTCGAATGTTCGTTCATAAACTGTGATGAGAAATTTGCCCGTGATTCTGACAAAACAGAGCATTTAAAAACTGTTCACAAGCTATTGAAATGTTCGCAATGTGACAAGACGTTCAGACATGCAAGTGGCCTATTATTACATAATCGGACTTTTCATTTGGGCATTAGGTTTGTCTGTCTGATTTGCAATGTCACCTTCACACAGAATAGTGCATTAAAACAGCACAATGAATCAATCCATGATAAATTGACTGTGCGTTGTGGATTGTGTAAAAAAACATTTACTAGTAAAGCTCATTTGAGAATTCACACAAGATCAATACACTTAAAAATAAGATATTTCTGTGAGATGTGTCCAAGAAGTTTTTCTCAGAAAGGCAGTTTGCAGCAACATATTGTTAGTAATCATTCAGGTTTGCAATTCATTTGCGATTATTGCAATAAGTCTTTTAATAAGAAAGATAGACTTGCAACTCACATAAAACTGATTCATGAGGGGAAGAAGTACACTTGTGATATATGTGGGTTGACTTTTGGTTGGAAAATAAGTCTGAAGCAGCATCTACAAAATATACACCAGGGAATAAGATTTCCTTGCAACGAATGTGGAAAGAGTTATAGGGAAAAGCAACGCCTTAATCAACATATTGCTCTTGTACATCTTGGTATCCACAAATACAAGTGTGAGCTGTGCAACGTCAGTTTCTGCCAATCGGGTAACCTCAAACAACACAATCTTTCTGTTCATATCGGCCGAAGGTTCGAATGTCATTTTTGTGAAAGGAAATTCAAACAGAAAGACGGCCTGAGAAAGCATATAGAACATTTTCATCAAGCCATTGTCTATACATGTAATGATTGCAATAATACGTTTACTTCCAGAAAAGCTTTGAAACGTCACCTCTGCAATCAGAGTTAA
- Protein Sequence
- MSKEPAMDTDLITCEEIKIDNQQISDEQDPHVNEEKDPAVTSLLDNDEEGKINYNNKIANRRSSLRSRKNIVSYFENAIQSIRRCSMASSKKKSKNVDQVVQGSLNFSNAATTFVLGKTHLNANIDDFLKKFSDESCVGQLPGPDSQAVEYECDMCNQGFKSKNHLREHVKSTHCDVVYECGFCQEPFNSRESLIKHVDYVHLELKFECSFINCDEKFARDSDKTEHLKTVHKLLKCSQCDKTFRHASGLLLHNRTFHLGIRFVCLICNVTFTQNSALKQHNESIHDKLTVRCGLCKKTFTSKAHLRIHTRSIHLKIRYFCEMCPRSFSQKGSLQQHIVSNHSGLQFICDYCNKSFNKKDRLATHIKLIHEGKKYTCDICGLTFGWKISLKQHLQNIHQGIRFPCNECGKSYREKQRLNQHIALVHLGIHKYKCELCNVSFCQSGNLKQHNLSVHIGRRFECHFCERKFKQKDGLRKHIEHFHQAIVYTCNDCNNTFTSRKALKRHLCNQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353989;
- 90% Identity
- -
- 80% Identity
- -