Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0033 1.8 8.8 1.5 13 39 24 47 13 52 0.85

2 10 0.00068 0.38 11.0 4.8 6 38 46 78 45 79 0.83

3 10 0.00029 0.16 12.2 0.6 18 40 94 113 90 116 0.90

4 10 0.003 1.6 9.0 0.9 18 41 122 142 118 144 0.85

5 10 0.038 21 5.4 0.3 18 39 150 168 144 172 0.83

6 10 7.1e-05 0.039 14.2 0.7 18 41 178 198 175 200 0.93

7 10 0.46 2.5e+02 2.0 0.8 17 28 205 216 201 227 0.77

8 10 0.053 29 5.0 1.2 15 30 231 247 224 256 0.78

9 10 0.038 21 5.5 0.6 18 34 290 307 278 311 0.81

10 10 0.0039 2.2 8.6 0.2 13 39 314 337 307 341 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0033	1.8	8.8	1.5	13	39	24	47	13	52	0.85
2	10	0.00068	0.38	11.0	4.8	6	38	46	78	45	79	0.83
3	10	0.00029	0.16	12.2	0.6	18	40	94	113	90	116	0.90
4	10	0.003	1.6	9.0	0.9	18	41	122	142	118	144	0.85
5	10	0.038	21	5.4	0.3	18	39	150	168	144	172	0.83
6	10	7.1e-05	0.039	14.2	0.7	18	41	178	198	175	200	0.93
7	10	0.46	2.5e+02	2.0	0.8	17	28	205	216	201	227	0.77
8	10	0.053	29	5.0	1.2	15	30	231	247	224	256	0.78
9	10	0.038	21	5.5	0.6	18	34	290	307	278	311	0.81
10	10	0.0039	2.2	8.6	0.2	13	39	314	337	307	341	0.83

Coding Sequence: ATGAGTGAAAACTGTGATTATGTAACTATTAAGAAATCAAATCTTGCCACTCATTCAAGTACTCATAAAGGAGAAAACTCTTACAGCTGTGAATTCTGTAATAAATCATTTACTGACACAAAAGATCTTACCAGACATTTACATATACATACTAAAGAAAGAACATTTATATGTGAATTTTGTGAGAAATCATTCACACGAAAATCACATCTCACCACACATTTATATACTCACACTGGTGAACAACCATTCATGTGTGGAATTTGGGAAAGACCTTACACATGTGAAATTTGTGAGAAATCATTCAATCAAAAATCCAATCTCACCTCTCATTTACGCATTCATAATGGGGAGAGACCTTACACATGTGAATTTTGTGAGAAATCATTCACTCAAAAACACCAGCTCATCACTCATTTACGTACACATACTGGTGAAAAACCATTCATCTGTGAATTATGTGATAAGTCATTCAATGAAAAATCAAAACTCACCCGACATCTACTCACACATACTGGTGTAAAACCATTCACTTGTAAATTTTGCAATAAATCTTTCACTCAGAAATCAAACTTAATGGTACATTTACGTACACATAATGGGGAAAACCCTTACAAATGTGAATTTTGCAATAAATCTTTCATTCAAAAATCAGCTTTTAATGAACATTTATGTCTACACACTGGAGAAACCCCATTCACCTGTGAAATTTGTGAGAAATCATTCACTCAAAAACACCATCTCATCTCATATTCTCATACACATACTGATGTAAAACCATTCATCTGTGAAATACGTGAGAAATCATTCACTCAAAAATACAGTCTCATCTCTCATTTACTCACACATACTGGTGTAAATCCATTCACTTGTGAATTTTGCAATGAAGCATTCACTCAAAAATCACATCTCACCACGCATCTAGCTATACAATATACTGAAGAAACCCCATTCAAATGTGATTTTTGTGATGCGTCATACTCTCAAAAATCAGCGCTCACCAGACATTTATGTACTCATACTGATGAAAGG
Protein Sequence: MSENCDYVTIKKSNLATHSSTHKGENSYSCEFCNKSFTDTKDLTRHLHIHTKERTFICEFCEKSFTRKSHLTTHLYTHTGEQPFMCGIWERPYTCEICEKSFNQKSNLTSHLRIHNGERPYTCEFCEKSFTQKHQLITHLRTHTGEKPFICELCDKSFNEKSKLTRHLLTHTGVKPFTCKFCNKSFTQKSNLMVHLRTHNGENPYKCEFCNKSFIQKSAFNEHLCLHTGETPFTCEICEKSFTQKHHLISYSHTHTDVKPFICEIREKSFTQKYSLISHLLTHTGVNPFTCEFCNEAFTQKSHLTTHLAIQYTEETPFKCDFCDASYSQKSALTRHLCTHTDER

Sequence clustering based on sequence similarity using MMseqs2