Sfur014671.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- PAXBP1
- Assembly
- GCA_014356515.1
- Location
- chr7:12819924-12840557[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.72 7.5e+03 -3.6 0.8 57 76 81 100 75 109 0.64 2 2 3.2e-31 3.4e-27 96.0 1.2 3 272 349 559 347 561 0.94
Sequence Information
- Coding Sequence
- ATGGCATCTTTCAAAAAGCCCAAACGAAATTTACGTAAGCGGGGTGAGATAGGATTTTCAAATGAAATTGACTTGGAAGACAAATCCAATTCAAACAGCTCTGATGGGTTCAGCTTTGTCAAGAAACCAGACAAGAAAGTTAAAAAAGAATTGACGAAAACATCGGTACTGAGTTTTGGAGAAGAGTTGGATGAAGGTGATGACGGTGAGGTATTCCAAGTGAAGAAATCCTCTCAAAGTAAAAAAATCAGGAAGCTACTAGATAAAGAAAAAAAGAAGAAAAAAGATGTGAAATCTGACGAAGCCACAGATAGAAGTAACACCAAAGAGATATTGGTAGACGATGAAATCACTATAAAAATCAAGAATCCCATCAATGTACCTAGAGTATTGAATGGCCGAGAAGCTCTTGCAACTTTGAGTGAAAGTTCGGATGAGGAAGAAGGTTCCAACAACCATGGGGCTATGAGGCATAAATTCTCTCATTCAGATCACATGAAACAACTATTGAAAAGTGGCTGCATCCCAGATGCGGCTATGATTCATGCAGTTAGAAAAAGGAGACAAGAAGCGAGAGAACTGGGAGTTGATTACATTCCTGTCAACGAAAAAAATGGACAAGACCTTGATAAATCCAAGCATGAAATTTTGATTCATGGTGATTCAGCATTCTTTGTAGTTGTGATTTTGCTGGCGTTGGAACAGCGACTGTTGTCGGTGTACAAAAAGCGGTGCACTGACTTGATGACTCGCCGCAGACAGGATGTTAAGGACCAGGCTGAAGAACTTGCCTCGTCAGCTTCTAAAAACCTGTTGAGAGATGAGGAGAGGGTGCGAAGAGCGGCTGAGAGAGAGGGAAGGCGTATCAGGCGTTTGCGCCTGCGCGAGCAGAAGCAGTCGATTGGCAAACACACGGATGGCATGTCCAGCGATGATGAGGTCACTGAAATGGAGGCGGCAGCTTTCCGGACACAGAAAGATACTGTTGAACTAGATGCCAAACATGTGTTTGAGGATGCTCTGGATGATTTCTCTACAGTTGGAGGAGTTCTAAAAAAGTTTGAGAGCTGGAAGAAGACTGATCTCGACGCCTACACAGAAGCTTATGTTAATCTATGTTTACCAAAAGTACTGGGGCCATTGATAAGGCTCAGTATCTTGATGTGGAACCCTTTGGCTCAGACCGGAAGCGACTTGGAGAAAACACCCTGGTACGTGAACCTACTAAATTATGGAATGAAGAAGTCTGAAACAGAAGAAACTTTAAGAGCCGATCCTGATCTGCAATTGATACCTAGAGTATATGAAAAAATCATTCTACCAAAATTGAATCAGCTTGTGGAAGCCAGCTTTGACCCGATCTCCACTTCCCAATCGCTGACTCTTGTTCAAATCGTTTCCAACCTGATCCAGTACTATCCGACACTGAGTCAGGAAAGCAAGAACCTCAATACACTACTCAACACAATTGTGCTGAAGCTGCGCAGCGCCATCGAGAACGACGTTTTCATTCCGATCTACCCCAAGCAAATGATGGAGGGCCGCATGAACTATTTCTTCCAGAGACAGTTCGCGATGGGAGTGAAACTGTTGAGCAACATTGTGAGATGGCAGGGAATCGTTAGTGACGAGATAGTTTATGAACTGGCGCTCGATTCGCTGCTCAACCGCTATCTGTTGTTGGCTATCCGTATTAGTGAGCCTTTCCAAGCAGCCGCTAAATGCTACATGGTCAGTAGTGTTTTGCCGAAAGTTTGGCTCCAACCAGATAATACGCCCGACCAGTTGAAGTCCTTGGTTAACCAGGCTAAAACCATTTCTGAACAACTGGATCAAACAAGGCCGTTGGGA
- Protein Sequence
- MASFKKPKRNLRKRGEIGFSNEIDLEDKSNSNSSDGFSFVKKPDKKVKKELTKTSVLSFGEELDEGDDGEVFQVKKSSQSKKIRKLLDKEKKKKKDVKSDEATDRSNTKEILVDDEITIKIKNPINVPRVLNGREALATLSESSDEEEGSNNHGAMRHKFSHSDHMKQLLKSGCIPDAAMIHAVRKRRQEARELGVDYIPVNEKNGQDLDKSKHEILIHGDSAFFVVVILLALEQRLLSVYKKRCTDLMTRRRQDVKDQAEELASSASKNLLRDEERVRRAAEREGRRIRRLRLREQKQSIGKHTDGMSSDDEVTEMEAAAFRTQKDTVELDAKHVFEDALDDFSTVGGVLKKFESWKKTDLDAYTEAYVNLCLPKVLGPLIRLSILMWNPLAQTGSDLEKTPWYVNLLNYGMKKSETEETLRADPDLQLIPRVYEKIILPKLNQLVEASFDPISTSQSLTLVQIVSNLIQYYPTLSQESKNLNTLLNTIVLKLRSAIENDVFIPIYPKQMMEGRMNYFFQRQFAMGVKLLSNIVRWQGIVSDEIVYELALDSLLNRYLLLAIRISEPFQAAAKCYMVSSVLPKVWLQPDNTPDQLKSLVNQAKTISEQLDQTRPLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -