Sate002729.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:13947863-13949292[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.3 9.9e+03 -3.3 0.0 26 38 53 66 47 70 0.71 2 5 0.044 1.9e+02 2.2 0.2 17 45 298 325 278 334 0.77 3 5 0.057 2.5e+02 1.9 0.0 26 45 334 353 325 356 0.88 4 5 6.7e-05 0.29 11.2 0.1 21 47 357 382 354 389 0.82 5 5 8.8e-06 0.039 14.1 0.5 18 48 382 412 381 415 0.92
Sequence Information
- Coding Sequence
- atgaatattcaaattgaaatgcgAGTTTGCAGAGCTTGCTTAAAACCAtcagaagaaacaaaacttaGTGAGTTTAGTTTCGATagtgaaatattaaagagTTATGCTGAGCTGATTAATATTCAGACTTCTCCAGACTTTAGTAATCTACCAAGAACATTTTGTGACAAGTGCATCGCCAAAATCAAGCTTTCATCCAGTTTCAAGAAATCGTCAATTGTCTCAGAAAACTATTTGAAATCCTTCGTTGTTAGGATTAATCAGGAATTTACAAAATCTTTACCGAACGTTGGAACATCAGTAGAAAAAGAATCAGAAAATGAAGAGGATCCagaaatcgaagaacttCTTCTTGACGACAGAGGAACCGAATCCGAACAGAGAATTGATCAGACAGACAGAGAATTGATTTCCGAGGAAGTTAGTCAAGAGCCAAAAGTCTTGAAGCAGTCGGAAATTGACAAATTATCTTCTGCTTCAACAgtcaagaaaaaaacaagTATTAGGATAGAAAAGGTAACGGAGGTAAAAACGGAATCAGAGAAACAGAAGTCAGATTATATGGATGTTGACTCATCCGGATTGTACACTGAAGAAGAGCagcttgatgatgatggaaaTATGTTTGGTGAAGAGATTTATGACATAATGGAGATCGAAAACGAAGGAGCCGATAACATTTACCTCGATGAAACTGGAAAACAAGTGCTAGCTGATGAAGAGGGGGAATTTATTCTTGTCAACTTCAAATCATCTAATGAAGACCTAACTGAGAAGGAGCAGCAGTTTGTTGTGGAAGAATTGTACGGTGGTGAAGAAGCTTCAGAGACGAAACATACCCGAAAGAAACATGTTACTCGCATGCCTCGGGAGATCATAGAAAAATACGCATCTTCAACTGAAAACAACCAGCATATTTGTACAAAGTGCGTCAAAGTATTTTCGACTCGCACCAATCTCATACGACACATTCAATCTCATGATGGTTACAAAGCTTACGTTTGTCAAATTTGCGACAAAGGTTTCACGCAATCAGGAAGTTTAAAGCAACATATGTACATTCATTCTGGAGAACGTCCATATAAATGTCCAATTTGCAGCAGAGCATTCACTCAAGGGAAAACCTTAAAGTTTCATCTACGCCGTCACACTGAAGAAAAACCCTTTATATGCTCTGAGTGTAACTCTGCATTCCGTCAACGCGATGGACTCAAGCGGCATCTAAAGTCCCGTCACAACATAGAACTTAAATATGACCGAAGTAATCAATTGAGCAGTGATAAAGTCGTTTATGTAAGCATCGATCAAGAAGCAGAAAACACAGATACGAAATCAAATGCGTCTACAATGAGTGGAAGTAAAAAAGAGTAA
- Protein Sequence
- MNIQIEMRVCRACLKPSEETKLSEFSFDSEILKSYAELINIQTSPDFSNLPRTFCDKCIAKIKLSSSFKKSSIVSENYLKSFVVRINQEFTKSLPNVGTSVEKESENEEDPEIEELLLDDRGTESEQRIDQTDRELISEEVSQEPKVLKQSEIDKLSSASTVKKKTSIRIEKVTEVKTESEKQKSDYMDVDSSGLYTEEEQLDDDGNMFGEEIYDIMEIENEGADNIYLDETGKQVLADEEGEFILVNFKSSNEDLTEKEQQFVVEELYGGEEASETKHTRKKHVTRMPREIIEKYASSTENNQHICTKCVKVFSTRTNLIRHIQSHDGYKAYVCQICDKGFTQSGSLKQHMYIHSGERPYKCPICSRAFTQGKTLKFHLRRHTEEKPFICSECNSAFRQRDGLKRHLKSRHNIELKYDRSNQLSSDKVVYVSIDQEAENTDTKSNASTMSGSKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353243;
- 90% Identity
- iTF_01353243;
- 80% Identity
- iTF_01353243;