Sate002660.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:13572874-13575179[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.14 6.3e+02 0.6 0.1 22 45 50 73 47 79 0.71 2 9 0.0014 6.2 7.0 0.0 21 49 289 317 285 320 0.87 3 9 0.00033 1.4 9.0 0.0 21 44 317 340 313 344 0.91 4 9 0.005 22 5.2 0.0 21 45 345 369 341 377 0.90 5 9 0.059 2.6e+02 1.8 0.1 22 46 402 426 395 432 0.79 6 9 0.00035 1.5 8.9 0.1 23 47 431 455 425 462 0.84 7 9 0.023 99 3.1 0.0 22 45 486 509 480 516 0.85 8 9 0.00074 3.2 7.9 0.0 21 48 513 540 508 544 0.86 9 9 0.00046 2 8.6 0.1 21 45 541 565 537 571 0.91
Sequence Information
- Coding Sequence
- ATGCTGGCCAATAACAAATTCGAAGCGCAAAAGcaacaaattcaaaactATGGATTTCCAAGCGGATccaaaattattctttacGGTGGACGCACTTGCATTCTGTCTGAGCAAAAGATAACAACAAGTGGAATGATAGGAACAATTGAACAGCCACAATCATGTCATTTGTGTCAAAAGGACTATCCTTCATTAGCGAGTCTGCAGCAACATATTAAGGAACAACATCTCGACAACAAAATCTATCGCAACATCATTGCAGTCTCGACGGTTGGCAATCAAGTCACAATGATTCCTACAACATCCCTTCATCAATATCAGATCGCAACCAGTGCTATTAAGATCGAAAAGGACTTTCAACAAATCCAAACAAAGCTTGTTCcggaaataattaaacaacCTGATTATACAACGGTCGCTATGAATGTTGCACATCCAGTGATTCAGCACATTCAGATACAACCAAGGGACAAAGAAAAGTCAAATGTGGTGCAAGTGATTAAACAGAATCCAGTCGAGTATCATATACAGCAACAAGAGCATGCAGCAATGGTGGTTGCTGCGATGAATCAAAAGTCCGGGATATCCAATCCGTTTCTAAACAGCACAATAAAATATGAACTTCACGCTCAGCCTGTTCAATTGGTCACTGAAGTTTATCCACAAATGGTAACTGAGGCAACAAAATCAGAAGACTTGAGTTCTCATTCTTCCGCTCCTTCGCCAACCATCAACGTCCAAACAAACACGGCTGGTCCAGTTTTGTCAAACGGAGAGACTATGGAGAAACAGCATAAATGTTTGGTGTGCGATAAGTTCTTTACAACTGTTGGGAATCTAAATATTCATCTCAAGATACACGCTGGCGAAAAACCTTATAAATGTAATGTCTGTGGAAAAGgttttattcaatcaaataaCTTGGCAACCCACATGAAAATACACACTGGGGAAAAACCTCATGGTTGTCAGATTTGTGGAAAACGATTTAGTCAATCAAACAATCTCAAGACTCACATTCGAACTCATACTGGCGAAAAGCCCTTCAAGTGCACGCTTTgtgagaaaagctttaaccAGAAAAATAATCTTACGACACACTTGAGAACACACAGTGACTATCACCCGTCGAACTGCAGCATGTGTAATCAAACTTTCACTTCGTTCAACGAACTGTTTACTCACATGCGAGAACATACTGATCAAAAGCCTCATGTGTGTACGGTCTGTACCAAAGTGTTTAATGCTCAAAGTGATTTGTCAGAACACATGAAGCAGCACTCGAATCCCAAGCCCTATAAATGTGATATTtgtcaaaagcaatttacacaatcaaataatttgaagacGCACATCAAGACTCATATTTACCAAGACCCGTACAAGTGTTCAATGTGCACGAGGTCTTTTCAGGACCAAGAAGAATATCAACTACACGTgCGAGTTCACACTTTTGACAAACCATATGAGTGCACATATTgtggaaaaaaatttattcagagTAATAACTTAAAAACACACGTTCGAACTCATACTGGCGAGAAACCATATTCCTGCACCGTTTGCGGAAAGTCCTTCAACCAGAAAAACAATCTTAATACTCATCTTCGAGTTCACACGGGAGAAAAGCCATTCGAATGTCATTTATGTGATCGTCGctttaatcaatcaaataatttgaataaacatcTGAAAACGCATGggcaagaaaaagaaatgagtAAAGCGATGGAAACAGAAATGGagaaaatgatgaacaaCGTTATCATGCAACAGTAG
- Protein Sequence
- MLANNKFEAQKQQIQNYGFPSGSKIILYGGRTCILSEQKITTSGMIGTIEQPQSCHLCQKDYPSLASLQQHIKEQHLDNKIYRNIIAVSTVGNQVTMIPTTSLHQYQIATSAIKIEKDFQQIQTKLVPEIIKQPDYTTVAMNVAHPVIQHIQIQPRDKEKSNVVQVIKQNPVEYHIQQQEHAAMVVAAMNQKSGISNPFLNSTIKYELHAQPVQLVTEVYPQMVTEATKSEDLSSHSSAPSPTINVQTNTAGPVLSNGETMEKQHKCLVCDKFFTTVGNLNIHLKIHAGEKPYKCNVCGKGFIQSNNLATHMKIHTGEKPHGCQICGKRFSQSNNLKTHIRTHTGEKPFKCTLCEKSFNQKNNLTTHLRTHSDYHPSNCSMCNQTFTSFNELFTHMREHTDQKPHVCTVCTKVFNAQSDLSEHMKQHSNPKPYKCDICQKQFTQSNNLKTHIKTHIYQDPYKCSMCTRSFQDQEEYQLHVRVHTFDKPYECTYCGKKFIQSNNLKTHVRTHTGEKPYSCTVCGKSFNQKNNLNTHLRVHTGEKPFECHLCDRRFNQSNNLNKHLKTHGQEKEMSKAMETEMEKMMNNVIMQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353014;
- 90% Identity
- iTF_01353014;
- 80% Identity
- iTF_01353014;