Sate014836.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27463350-27468461[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.66 28 5.4 1.2 2 23 548 570 547 570 0.93 2 11 0.00011 0.0048 17.3 1.2 1 23 575 598 575 598 0.97 3 11 0.014 0.6 10.6 0.6 1 23 607 629 607 629 0.94 4 11 0.95 39 4.9 1.3 1 23 634 659 634 659 0.94 5 11 0.0042 0.18 12.3 1.4 1 23 665 690 665 690 0.93 6 11 0.62 26 5.5 0.4 2 23 1105 1127 1104 1127 0.93 7 11 0.0086 0.36 11.4 3.3 1 23 1132 1155 1132 1155 0.96 8 11 0.015 0.64 10.6 0.5 1 23 1164 1186 1164 1186 0.94 9 11 2.7 1.1e+02 3.5 1.2 3 23 1193 1216 1191 1216 0.91 10 11 0.0012 0.051 14.0 1.4 1 23 1222 1247 1222 1247 0.93 11 11 0.5 21 5.8 0.4 2 23 1252 1275 1252 1275 0.96
Sequence Information
- Coding Sequence
- ATGTTTTCTAATAAGGCTCCAAAACGATTAAATATTCTAAAAGGCGGAAGGCCGTTGCGTTTGACATCATCAGAAGAGTCTGAACTAGTAAAATGGGTTGTCGAATGTGCTGAAAGCGGAAAACCTGCAAAAAAACGAACTGTTTTGAATGCTGCGACAGAAATTCTTCGACGAAAGAATGGAAAGCACGAAACTCTTTCAGCCAAATGGTATTATGGATTCTTACAACGTCACCCAGAGCtgggaaaacaaaaaacatcCAAAGAATCCCGAAAAAGTGACGATTGCAAGAAGAAAGCCTCAGACAATCCTCAAAGTAATTGCAGACTTTGCCTTGAGCTGCTCGAGAATAAAAcagaaagtaaatttgtGTTAGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTGTTCTTCGATTGCCGACAGCTTCATCGAATTCTCTCTGCATTTCCTGCTACGCCCAAGTGAATGACTTCCATCACTTCAGATCGACGATCATCCAAAAGCACTCGAACAGCGAACAATTTGAACTTTGCGAGATTAAAATGGagcaaatcgatttcaatccTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGATTACGAGTGGAACGCTGATGATTGGAACAATGAACCAAACACAGACGACAACACTGAATGTGATCAACGAGAATTAGAAATTCCTCAACTTCCAAACGATTCTGATAACGCTTGGATAGGATCTGATAACGGAGAATCAATAATTCCTCATTTAAAAAACGATTTCGAGGAAGTTTTAGAAGAACTTAAAAAAGGAGAATTGCAAATTCATCAATTACAAATCGATCTTGACAAAGCTCTAAAGGAAATTGACAAAGGATCTTCCATCACCGACGCAGCTTTAAAGTTCAACATTTCGGAATCACATTTGAAGGATTTTGCCGAAAGATCGAGTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTGTGATCCAAAGACGAAACGAAATGTTCTCGATGCTGCAActcatttatcaaaacttAACTCTTCCACGatctcaaatgaaatcaatgacAACTGGTTCCGAAGCTTTCTAAAGAGAAATCCTGATGTGCTTCTGCCAAATGTATTGGATTGGAAACAAATATACGAGGAAACAACTGAGGATCTTCCAGACGACAAAGCTCCGGATAATTGTGAGAACGAAATTGATTGGATTGAGGAACAAGCTGTGAAGGctggaaaaaataaatttaccgATGAAACCATGAAACTTGCTCTTGAGGAAATTGAACGTGGAGCATCTTTTAGATCGACTGCaacaaaatacaaaatttcCAGAAGTACTTTATATGAAAGACACAAATATGGCGATCCTAGAAAAAGGTCAAACAAACCAATAATTCCCCAAGCTTTAGAAATGAGACTTGTCGAATGGATCGTTGCTTGTAACGAACTGGGTGACAAGAAAGAATGTACAAACATTTCTAAAGTTTTGTCGCATCTCTTCAAGAATCGAAATAACCAGGAAGCAAGAGTTAAAGATTGGGTTGATCGCTTTCTAAGACGACATCCTGAGACTTTAATTAAACCTTCAAAgGAATTAAAAAAGTCTGAATGCGATTTGTGTGGATATCATCATACCAATCGATCTCTTGTGAGAAATCACATCCTCGCTGTTCatgcaaagaaaaagttcaaatgcAAAATTTGTGAGAagatatttaattcaattcagaGTCTTAGAAATCATGTACGGGAGAAACATCCTGCGCCTGGAAAAGCAAAGAACTTTGTTTGTGAAGTTTGTGCAATAAGTTTCTACACATGGAAAGCTCTTCACACACATTCTGTGCGTCacaaggaaaagaaatttcattgcgatTTTGAAGGATGcgtcaagaaatttttaagtgCAAACGAACTCGAAAATCACAAACGCAATGACCACTAcggattgaaaaatttcaattgtgaTTTTCCTGGCTGCGAAAAAGGTTACAGCACCAAACAAAGACTGAGACGACatcaaaaagagaaacacGAGGAACGAGCGAAGTGTCCAGTCAGCAATTGCACTTTTAATGTTCTTCGATTGCCGACAGCTTCATCGAATTCTCTCTGCATTTCCTGCTACGCCCAAGTTAATGACTTCCATCACTTCAGATCAACGATCATCAAAAAGCACTCGAACAGCGAACAATTTGAACTttgcgaaattaaaatggaacaaatcgatttcaatccTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGAATACGAATGGAATGCAGATGACTGGAACAATGAAGCAAACACAGACATCAACATTGAATGTGATCAACGAGAATTAGAAATTCCTCAACTTCCAAACGATTCTGTAAACGCTTGGATAGAAATTCCTCAAtcggaaaatgatttcgaggaagttttgaaagaaattagaaaaggAGAATTGCAAATTCATCAATTACAAATCGATCTTGACAAAGCTCTAAAGGAAATTGACAAAGGATCTTTCATCACCGACGCAGCTTTAAAGTTCAACATTTCGAAATCACATTTGAAGGATTTTGCCGAAAGATCGAGTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCAAAACTTCTGGCGAAATGTTTGATCCAAAGACGAAACGAAATGTTCTCGATGCTGCTAATCATTTGTCACAACTTGACTCATCCACGatcacaaataaattcaatgacAACTGGTTCCGAAGCTTTCTAAAGAGAAATCCTGATGTTCTTCTGCTAAATGTTTTGGATTGGAAACCAATTTCCGATGATATTACACAGGATTTTCCGgacaaagcttcaaataattCAGAGAATGAATTTGATTGGATTGAGGAACAAGCTGTGAACGctggaaaaaataaattttccgatgaaacattaaaacttGCTCtggaagaaattgaaaacggaGCATCTATTAGATCGACTGCAAAAAAATACAATATTGGCAGAAAGGTTTTATATAACCGAAAAAAACATGGAGATCCTAGAAAAAGGTCAAACAAACCAATAATTTCCGATGTTTTAGAGAAGAGACTTGTCGAATGGATCGTTGCTTGTAATGAACTGGGTGACAAGAAGGATCATTCAAACATTTGTAAAGTTGTGTCGCATCTCTTCAGAAATCGAAATAACCAGGAAGCAAGAGTTAAAGATTGGGTTGATCGCTTTCTAAGACGACATCCTGAGACTTTAATTGAACCTTCAAAggAATTAAAAAAGTCTGAATGCGATTTGTGTGGATATCAACATACAAATCGATCTCTTGTGAGAAATCACATCCTCGCTGTTCatgcaaagaagaagttcaaaTGCAAAATTTGTGAGAagatatttaattcaattcagtGTCTTAGATATCATGCACGGGAGAAACATCCTGCGCCTggaaaagcaaagaattttgtttgtgaagtTTGTGCAATAAGTTTCTACACATGGAAAGCTCTACACACACATTCTGTGAGTCacaaggaaaagaaaattcattgcgATTTTAAAGGATGcgtcaagaaatttttaagtgCAAACGAACTCGAAAATCACAAACGCAATGACCACTACGgattgaaagatttcaattgtGATTTTCCTGGCTGCGACAAAGGTTACAGCACCAAACAAAGACTGAGACGACATCAAAAGGAGAAACACGAAGAACGACCGAAGTGTCCGATCAACAATTGCAGTTTTCGTGTTGGCCGTGCTGATTACATGAGAGATCATTTGAGGAGACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattattaagaaaatgaagttgtcaacttga
- Protein Sequence
- MFSNKAPKRLNILKGGRPLRLTSSEESELVKWVVECAESGKPAKKRTVLNAATEILRRKNGKHETLSAKWYYGFLQRHPELGKQKTSKESRKSDDCKKKASDNPQSNCRLCLELLENKTESKFVLGDLEMKINEIFPSNVLRLPTASSNSLCISCYAQVNDFHHFRSTIIQKHSNSEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNEPNTDDNTECDQRELEIPQLPNDSDNAWIGSDNGESIIPHLKNDFEEVLEELKKGELQIHQLQIDLDKALKEIDKGSSITDAALKFNISESHLKDFAERSSSPQEFDRKIANWIITSGEMCDPKTKRNVLDAATHLSKLNSSTISNEINDNWFRSFLKRNPDVLLPNVLDWKQIYEETTEDLPDDKAPDNCENEIDWIEEQAVKAGKNKFTDETMKLALEEIERGASFRSTATKYKISRSTLYERHKYGDPRKRSNKPIIPQALEMRLVEWIVACNELGDKKECTNISKVLSHLFKNRNNQEARVKDWVDRFLRRHPETLIKPSKELKKSECDLCGYHHTNRSLVRNHILAVHAKKKFKCKICEKIFNSIQSLRNHVREKHPAPGKAKNFVCEVCAISFYTWKALHTHSVRHKEKKFHCDFEGCVKKFLSANELENHKRNDHYGLKNFNCDFPGCEKGYSTKQRLRRHQKEKHEERAKCPVSNCTFNVLRLPTASSNSLCISCYAQVNDFHHFRSTIIKKHSNSEQFELCEIKMEQIDFNPVVNILAIKEEDLGEYEWNADDWNNEANTDINIECDQRELEIPQLPNDSVNAWIEIPQSENDFEEVLKEIRKGELQIHQLQIDLDKALKEIDKGSFITDAALKFNISKSHLKDFAERSSSPQEFDRKIANWIKTSGEMFDPKTKRNVLDAANHLSQLDSSTITNKFNDNWFRSFLKRNPDVLLLNVLDWKPISDDITQDFPDKASNNSENEFDWIEEQAVNAGKNKFSDETLKLALEEIENGASIRSTAKKYNIGRKVLYNRKKHGDPRKRSNKPIISDVLEKRLVEWIVACNELGDKKDHSNICKVVSHLFRNRNNQEARVKDWVDRFLRRHPETLIEPSKELKKSECDLCGYQHTNRSLVRNHILAVHAKKKFKCKICEKIFNSIQCLRYHAREKHPAPGKAKNFVCEVCAISFYTWKALHTHSVSHKEKKIHCDFKGCVKKFLSANELENHKRNDHYGLKDFNCDFPGCDKGYSTKQRLRRHQKEKHEERPKCPINNCSFRVGRADYMRDHLRRHTDIDDQELQEYLLIIKKMKLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352564;
- 90% Identity
- iTF_01352564;
- 80% Identity
- iTF_01352564;