Sate014836.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27463350-27468461[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.048 34 4.2 0.0 4 33 282 310 282 319 0.87 2 4 1.1e-07 7.9e-05 22.3 0.0 1 39 428 466 428 471 0.92 3 4 1.2 8.1e+02 -0.2 0.0 5 34 841 869 840 877 0.71 4 4 3.4e-06 0.0024 17.5 0.0 2 43 986 1026 985 1028 0.90
Sequence Information
- Coding Sequence
- ATGTTTTCTAATAAGGCTCCAAAACGATTAAATATTCTAAAAGGCGGAAGGCCGTTGCGTTTGACATCATCAGAAGAGTCTGAACTAGTAAAATGGGTTGTCGAATGTGCTGAAAGCGGAAAACCTGCAAAAAAACGAACTGTTTTGAATGCTGCGACAGAAATTCTTCGACGAAAGAATGGAAAGCACGAAACTCTTTCAGCCAAATGGTATTATGGATTCTTACAACGTCACCCAGAGCtgggaaaacaaaaaacatcCAAAGAATCCCGAAAAAGTGACGATTGCAAGAAGAAAGCCTCAGACAATCCTCAAAGTAATTGCAGACTTTGCCTTGAGCTGCTCGAGAATAAAAcagaaagtaaatttgtGTTAGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTGTTCTTCGATTGCCGACAGCTTCATCGAATTCTCTCTGCATTTCCTGCTACGCCCAAGTGAATGACTTCCATCACTTCAGATCGACGATCATCCAAAAGCACTCGAACAGCGAACAATTTGAACTTTGCGAGATTAAAATGGagcaaatcgatttcaatccTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGATTACGAGTGGAACGCTGATGATTGGAACAATGAACCAAACACAGACGACAACACTGAATGTGATCAACGAGAATTAGAAATTCCTCAACTTCCAAACGATTCTGATAACGCTTGGATAGGATCTGATAACGGAGAATCAATAATTCCTCATTTAAAAAACGATTTCGAGGAAGTTTTAGAAGAACTTAAAAAAGGAGAATTGCAAATTCATCAATTACAAATCGATCTTGACAAAGCTCTAAAGGAAATTGACAAAGGATCTTCCATCACCGACGCAGCTTTAAAGTTCAACATTTCGGAATCACATTTGAAGGATTTTGCCGAAAGATCGAGTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTGTGATCCAAAGACGAAACGAAATGTTCTCGATGCTGCAActcatttatcaaaacttAACTCTTCCACGatctcaaatgaaatcaatgacAACTGGTTCCGAAGCTTTCTAAAGAGAAATCCTGATGTGCTTCTGCCAAATGTATTGGATTGGAAACAAATATACGAGGAAACAACTGAGGATCTTCCAGACGACAAAGCTCCGGATAATTGTGAGAACGAAATTGATTGGATTGAGGAACAAGCTGTGAAGGctggaaaaaataaatttaccgATGAAACCATGAAACTTGCTCTTGAGGAAATTGAACGTGGAGCATCTTTTAGATCGACTGCaacaaaatacaaaatttcCAGAAGTACTTTATATGAAAGACACAAATATGGCGATCCTAGAAAAAGGTCAAACAAACCAATAATTCCCCAAGCTTTAGAAATGAGACTTGTCGAATGGATCGTTGCTTGTAACGAACTGGGTGACAAGAAAGAATGTACAAACATTTCTAAAGTTTTGTCGCATCTCTTCAAGAATCGAAATAACCAGGAAGCAAGAGTTAAAGATTGGGTTGATCGCTTTCTAAGACGACATCCTGAGACTTTAATTAAACCTTCAAAgGAATTAAAAAAGTCTGAATGCGATTTGTGTGGATATCATCATACCAATCGATCTCTTGTGAGAAATCACATCCTCGCTGTTCatgcaaagaaaaagttcaaatgcAAAATTTGTGAGAagatatttaattcaattcagaGTCTTAGAAATCATGTACGGGAGAAACATCCTGCGCCTGGAAAAGCAAAGAACTTTGTTTGTGAAGTTTGTGCAATAAGTTTCTACACATGGAAAGCTCTTCACACACATTCTGTGCGTCacaaggaaaagaaatttcattgcgatTTTGAAGGATGcgtcaagaaatttttaagtgCAAACGAACTCGAAAATCACAAACGCAATGACCACTAcggattgaaaaatttcaattgtgaTTTTCCTGGCTGCGAAAAAGGTTACAGCACCAAACAAAGACTGAGACGACatcaaaaagagaaacacGAGGAACGAGCGAAGTGTCCAGTCAGCAATTGCACTTTTAATGTTCTTCGATTGCCGACAGCTTCATCGAATTCTCTCTGCATTTCCTGCTACGCCCAAGTTAATGACTTCCATCACTTCAGATCAACGATCATCAAAAAGCACTCGAACAGCGAACAATTTGAACTttgcgaaattaaaatggaacaaatcgatttcaatccTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGAATACGAATGGAATGCAGATGACTGGAACAATGAAGCAAACACAGACATCAACATTGAATGTGATCAACGAGAATTAGAAATTCCTCAACTTCCAAACGATTCTGTAAACGCTTGGATAGAAATTCCTCAAtcggaaaatgatttcgaggaagttttgaaagaaattagaaaaggAGAATTGCAAATTCATCAATTACAAATCGATCTTGACAAAGCTCTAAAGGAAATTGACAAAGGATCTTTCATCACCGACGCAGCTTTAAAGTTCAACATTTCGAAATCACATTTGAAGGATTTTGCCGAAAGATCGAGTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCAAAACTTCTGGCGAAATGTTTGATCCAAAGACGAAACGAAATGTTCTCGATGCTGCTAATCATTTGTCACAACTTGACTCATCCACGatcacaaataaattcaatgacAACTGGTTCCGAAGCTTTCTAAAGAGAAATCCTGATGTTCTTCTGCTAAATGTTTTGGATTGGAAACCAATTTCCGATGATATTACACAGGATTTTCCGgacaaagcttcaaataattCAGAGAATGAATTTGATTGGATTGAGGAACAAGCTGTGAACGctggaaaaaataaattttccgatgaaacattaaaacttGCTCtggaagaaattgaaaacggaGCATCTATTAGATCGACTGCAAAAAAATACAATATTGGCAGAAAGGTTTTATATAACCGAAAAAAACATGGAGATCCTAGAAAAAGGTCAAACAAACCAATAATTTCCGATGTTTTAGAGAAGAGACTTGTCGAATGGATCGTTGCTTGTAATGAACTGGGTGACAAGAAGGATCATTCAAACATTTGTAAAGTTGTGTCGCATCTCTTCAGAAATCGAAATAACCAGGAAGCAAGAGTTAAAGATTGGGTTGATCGCTTTCTAAGACGACATCCTGAGACTTTAATTGAACCTTCAAAggAATTAAAAAAGTCTGAATGCGATTTGTGTGGATATCAACATACAAATCGATCTCTTGTGAGAAATCACATCCTCGCTGTTCatgcaaagaagaagttcaaaTGCAAAATTTGTGAGAagatatttaattcaattcagtGTCTTAGATATCATGCACGGGAGAAACATCCTGCGCCTggaaaagcaaagaattttgtttgtgaagtTTGTGCAATAAGTTTCTACACATGGAAAGCTCTACACACACATTCTGTGAGTCacaaggaaaagaaaattcattgcgATTTTAAAGGATGcgtcaagaaatttttaagtgCAAACGAACTCGAAAATCACAAACGCAATGACCACTACGgattgaaagatttcaattgtGATTTTCCTGGCTGCGACAAAGGTTACAGCACCAAACAAAGACTGAGACGACATCAAAAGGAGAAACACGAAGAACGACCGAAGTGTCCGATCAACAATTGCAGTTTTCGTGTTGGCCGTGCTGATTACATGAGAGATCATTTGAGGAGACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattattaagaaaatgaagttgtcaacttga
- Protein Sequence
- MFSNKAPKRLNILKGGRPLRLTSSEESELVKWVVECAESGKPAKKRTVLNAATEILRRKNGKHETLSAKWYYGFLQRHPELGKQKTSKESRKSDDCKKKASDNPQSNCRLCLELLENKTESKFVLGDLEMKINEIFPSNVLRLPTASSNSLCISCYAQVNDFHHFRSTIIQKHSNSEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNEPNTDDNTECDQRELEIPQLPNDSDNAWIGSDNGESIIPHLKNDFEEVLEELKKGELQIHQLQIDLDKALKEIDKGSSITDAALKFNISESHLKDFAERSSSPQEFDRKIANWIITSGEMCDPKTKRNVLDAATHLSKLNSSTISNEINDNWFRSFLKRNPDVLLPNVLDWKQIYEETTEDLPDDKAPDNCENEIDWIEEQAVKAGKNKFTDETMKLALEEIERGASFRSTATKYKISRSTLYERHKYGDPRKRSNKPIIPQALEMRLVEWIVACNELGDKKECTNISKVLSHLFKNRNNQEARVKDWVDRFLRRHPETLIKPSKELKKSECDLCGYHHTNRSLVRNHILAVHAKKKFKCKICEKIFNSIQSLRNHVREKHPAPGKAKNFVCEVCAISFYTWKALHTHSVRHKEKKFHCDFEGCVKKFLSANELENHKRNDHYGLKNFNCDFPGCEKGYSTKQRLRRHQKEKHEERAKCPVSNCTFNVLRLPTASSNSLCISCYAQVNDFHHFRSTIIKKHSNSEQFELCEIKMEQIDFNPVVNILAIKEEDLGEYEWNADDWNNEANTDINIECDQRELEIPQLPNDSVNAWIEIPQSENDFEEVLKEIRKGELQIHQLQIDLDKALKEIDKGSFITDAALKFNISKSHLKDFAERSSSPQEFDRKIANWIKTSGEMFDPKTKRNVLDAANHLSQLDSSTITNKFNDNWFRSFLKRNPDVLLLNVLDWKPISDDITQDFPDKASNNSENEFDWIEEQAVNAGKNKFSDETLKLALEEIENGASIRSTAKKYNIGRKVLYNRKKHGDPRKRSNKPIISDVLEKRLVEWIVACNELGDKKDHSNICKVVSHLFRNRNNQEARVKDWVDRFLRRHPETLIEPSKELKKSECDLCGYQHTNRSLVRNHILAVHAKKKFKCKICEKIFNSIQCLRYHAREKHPAPGKAKNFVCEVCAISFYTWKALHTHSVSHKEKKIHCDFKGCVKKFLSANELENHKRNDHYGLKDFNCDFPGCDKGYSTKQRLRRHQKEKHEERPKCPINNCSFRVGRADYMRDHLRRHTDIDDQELQEYLLIIKKMKLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353274;
- 90% Identity
- iTF_01353274;
- 80% Identity
- iTF_01353274;